Literature DB >> 18754605

Theoretical analysis of core size effect in metalloporphyrins.

Pawel M Kozlowski1, Jason R Bingham, Andrzej A Jarzecki.   

Abstract

Density functional theory has been applied to a series of unsubstituted planar metalloporphyrins (MPs) to elucidate how geometry and frequencies correlate with the metal-nitrogen distance, referred to as the core size. Different transition metals can invoke expansion or contraction of the porphyrin core due to electronic effects resulting from the amount of d-electron pairing as well as occupancy of the d(x(2)(-y(2))) orbital. A full vibrational analysis consisting of all in-plane and out-of-plane frequencies was carried out, and the resulting modes were plotted against core size for a linear analysis and grouped within symmetry blocks. The modes were separated according to planarity, and all modes with a large slope and best fit greater than 0.8 were considered sensitive to metal-nitrogen distances. All planar skeletal modes above 1450 cm(-1), including the pyrolle ring deformations, are found to be core-size sensitive. The most significant out-of-plane modes sensitive to core size are gamma(8) and gamma(9), which are infrared active and grouped within the A(2u) symmetry block. The present work also opens possible quantitative applications for the correlation of spectroscopic properties of MPs and heme proteins with actual structural parameters.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18754605     DOI: 10.1021/jp801696c

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  4 in total

1.  Revealing substituent effects on the electronic structure and planarity of Ni-porphyrins.

Authors:  Jenna Barbee; Aleksey E Kuznetsov
Journal:  Comput Theor Chem       Date:  2012-02-01       Impact factor: 1.926

2.  Structural and molecular characterization of meso-substituted zinc porphyrins: a DFT supported study.

Authors:  Rudolf Słota; Małgorzata A Broda; Gabriela Dyrda; Krzysztof Ejsmont; Giuseppe Mele
Journal:  Molecules       Date:  2011-12-01       Impact factor: 4.411

3.  Molecular Structure of Nickel Octamethylporphyrin-Rare Experimental Evidence of a Ruffling Effect in Gas Phase.

Authors:  Alexander E Pogonin; Arseniy A Otlyotov; Yury Minenkov; Alexander S Semeikin; Yuriy A Zhabanov; Sergey A Shlykov; Georgiy V Girichev
Journal:  Int J Mol Sci       Date:  2021-12-28       Impact factor: 5.923

4.  Unique Properties of Heme Binding of the Porphyromonas gingivalis HmuY Hemophore-like Protein Result from the Evolutionary Adaptation of the Protein Structure.

Authors:  Joanna Kosno; Klaudia Siemińska; Teresa Olczak
Journal:  Molecules       Date:  2022-03-05       Impact factor: 4.411

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.