Literature DB >> 22128938

Two-dimensional infrared spectral signature and hydration of the oxalate dianion.

Daniel G Kuroda1, Robin M Hochstrasser.   

Abstract

Ultrafast vibrational spectra of the aqueous oxalate ion in the region of its carboxylate asymmetric stretch modes show novel relaxation processes. Two-dimensional infrared vibrational echo spectra and the vibrational dynamics obtained from them along with measurements of the anisotropy decay provide a picture in which the localization of the oxalate vibrational excitation onto the carboxylate groups occurs in ~450 fs. Molecular dynamics simulations are used to characterize the vibrational dynamics in terms of dihedral angle motion between the two carboxylate planes and solvation dynamics. The localization of the oxalate vibrational excitation onto the carboxylates is induced by the fluctuations in the carboxylate vibrational frequencies which are shown by theory and experiment to have a similar correlation time as the anisotropy decay.

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Year:  2011        PMID: 22128938      PMCID: PMC3254581          DOI: 10.1063/1.3658461

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  16 in total

1.  Residue-specific vibrational echoes yield 3D structures of a transmembrane helix dimer.

Authors:  Amanda Remorino; Ivan V Korendovych; Yibing Wu; William F DeGrado; Robin M Hochstrasser
Journal:  Science       Date:  2011-06-03       Impact factor: 47.728

2.  Cooperativity in ion hydration.

Authors:  K J Tielrooij; N Garcia-Araez; M Bonn; H J Bakker
Journal:  Science       Date:  2010-05-21       Impact factor: 47.728

3.  Correlation of the vibrations of the aqueous azide ion with the O-H modes of bound water molecules.

Authors:  Chun-Hung Kuo; Dmitriy Yu Vorobyev; Jianxin Chen; Robin M Hochstrasser
Journal:  J Phys Chem B       Date:  2007-11-29       Impact factor: 2.991

4.  Relaxation-assisted two-dimensional infrared (RA 2DIR) method: accessing distances over 10 A and measuring bond connectivity patterns.

Authors:  Igor V Rubtsov
Journal:  Acc Chem Res       Date:  2009-09-15       Impact factor: 22.384

5.  Coherent vibrational energy transfer along a peptide helix.

Authors:  Maja Kobus; Phuong H Nguyen; Gerhard Stock
Journal:  J Chem Phys       Date:  2011-03-28       Impact factor: 3.488

6.  Tidal surge in the M2 proton channel, sensed by 2D IR spectroscopy.

Authors:  Ayanjeet Ghosh; Jade Qiu; William F DeGrado; Robin M Hochstrasser
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-28       Impact factor: 11.205

7.  Water-induced relaxation of a degenerate vibration of guanidinium using 2D IR echo spectroscopy.

Authors:  Dmitriy Yu Vorobyev; Chun-Hung Kuo; Daniel G Kuroda; J Nathan Scott; Jane M Vanderkooi; Robin M Hochstrasser
Journal:  J Phys Chem B       Date:  2010-03-04       Impact factor: 2.991

8.  Ultrafast relaxation and 2D IR of the aqueous trifluorocarboxylate ion.

Authors:  Daniel G Kuroda; Dmitriy Yu Vorobyev; Robin M Hochstrasser
Journal:  J Chem Phys       Date:  2010-01-28       Impact factor: 3.488

9.  Two-dimensional infrared spectroscopy of the alanine dipeptide in aqueous solution.

Authors:  Yung Sam Kim; Jianping Wang; Robin M Hochstrasser
Journal:  J Phys Chem B       Date:  2005-04-21       Impact factor: 2.991

10.  2D-IR experiments and simulations of the coupling between amide-I and ionizable side chains in proteins: application to the Villin headpiece.

Authors:  Sayan Bagchi; Cyril Falvo; Shaul Mukamel; Robin M Hochstrasser
Journal:  J Phys Chem B       Date:  2009-08-13       Impact factor: 2.991

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  11 in total

1.  Force field parametrization of hydrogenoxalate and oxalate anions with scaled charges.

Authors:  Ondřej Kroutil; Milan Předota; Martin Kabeláč
Journal:  J Mol Model       Date:  2017-10-28       Impact factor: 1.810

2.  Hydration and vibrational dynamics of betaine (N,N,N-trimethylglycine).

Authors:  Tanping Li; Yaowen Cui; John Mathaga; Revati Kumar; Daniel G Kuroda
Journal:  J Chem Phys       Date:  2015-06-07       Impact factor: 3.488

Review 3.  Watching Proteins Wiggle: Mapping Structures with Two-Dimensional Infrared Spectroscopy.

Authors:  Ayanjeet Ghosh; Joshua S Ostrander; Martin T Zanni
Journal:  Chem Rev       Date:  2017-01-06       Impact factor: 60.622

4.  Quantum Beats and Coherence Decay in Degenerate States Split by Solvation.

Authors:  Lev Chuntonov; Daniel G Kuroda; Ayanjeet Ghosh; Jianqiang Ma; Robin M Hochstrasser
Journal:  J Phys Chem Lett       Date:  2013-06-06       Impact factor: 6.475

5.  Differential hydration of tricyanomethanide observed by time resolved vibrational spectroscopy.

Authors:  Daniel G Kuroda; Prabhat K Singh; Robin M Hochstrasser
Journal:  J Phys Chem B       Date:  2012-09-25       Impact factor: 2.991

6.  Structure and dynamics of solvated hydrogenoxalate and oxalate anions: a theoretical study.

Authors:  Ondřej Kroutil; Babak Minofar; Martin Kabeláč
Journal:  J Mol Model       Date:  2016-08-18       Impact factor: 1.810

7.  An ion's perspective on the molecular motions of nanoconfined water: a two-dimensional infrared spectroscopy study.

Authors:  Prabhat K Singh; Daniel G Kuroda; Robin M Hochstrasser
Journal:  J Phys Chem B       Date:  2013-08-08       Impact factor: 2.991

8.  Non-linear infrared spectroscopy of the water bending mode: direct experimental evidence of hydration shell reorganization?

Authors:  Lev Chuntonov; Revati Kumar; Daniel G Kuroda
Journal:  Phys Chem Chem Phys       Date:  2014-07-14       Impact factor: 3.676

9.  Vibrational dynamics of a non-degenerate ultrafast rotor: the (C12,C13)-oxalate ion.

Authors:  Daniel G Kuroda; Mohannad Abdo; Lev Chuntonov; Amos B Smith; Robin M Hochstrasser
Journal:  J Chem Phys       Date:  2013-10-28       Impact factor: 3.488

10.  Assessing the Location of Ionic and Molecular Solutes in a Molecularly Heterogeneous and Nonionic Deep Eutectic Solvent.

Authors:  Xiaobing Chen; Yaowen Cui; Habtom B Gobeze; Daniel G Kuroda
Journal:  J Phys Chem B       Date:  2020-06-03       Impact factor: 2.991

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