Literature DB >> 22127213

The Human Epigenome Browser at Washington University.

Xin Zhou, Brett Maricque, Mingchao Xie, Daofeng Li, Vasavi Sundaram, Eric A Martin, Brian C Koebbe, Cydney Nielsen, Martin Hirst, Peggy Farnham, Robert M Kuhn, Jingchun Zhu, Ivan Smirnov, W James Kent, David Haussler, Pamela A F Madden, Joseph F Costello, Ting Wang.   

Abstract

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Year:  2011        PMID： 22127213      PMCID： PMC3552640          DOI： 10.1038/nmeth.1772

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  5 in total

1.  A bivalent chromatin structure marks key developmental genes in embryonic stem cells.

Authors:  Bradley E Bernstein; Tarjei S Mikkelsen; Xiaohui Xie; Michael Kamal; Dana J Huebert; James Cuff; Ben Fry; Alex Meissner; Marius Wernig; Kathrin Plath; Rudolf Jaenisch; Alexandre Wagschal; Robert Feil; Stuart L Schreiber; Eric S Lander
Journal:  Cell       Date:  2006-04-21       Impact factor: 41.582

Review 2.  Visualizing genomes: techniques and challenges.

Authors:  Cydney B Nielsen; Michael Cantor; Inna Dubchak; David Gordon; Ting Wang
Journal:  Nat Methods       Date:  2010-02-25       Impact factor: 28.547

3.  The NIH Roadmap Epigenomics Mapping Consortium.

Authors:  Bradley E Bernstein; John A Stamatoyannopoulos; Joseph F Costello; Bing Ren; Aleksandar Milosavljevic; Alexander Meissner; Manolis Kellis; Marco A Marra; Arthur L Beaudet; Joseph R Ecker; Peggy J Farnham; Martin Hirst; Eric S Lander; Tarjei S Mikkelsen; James A Thomson
Journal:  Nat Biotechnol       Date:  2010-10       Impact factor: 54.908

4.  BigWig and BigBed: enabling browsing of large distributed datasets.

Authors:  W J Kent; A S Zweig; G Barber; A S Hinrichs; D Karolchik
Journal:  Bioinformatics       Date:  2010-07-17       Impact factor: 6.937

5.  The UCSC Cancer Genomics Browser.

Authors:  Jingchun Zhu; J Zachary Sanborn; Stephen Benz; Christopher Szeto; Fan Hsu; Robert M Kuhn; Donna Karolchik; John Archie; Marc E Lenburg; Laura J Esserman; W James Kent; David Haussler; Ting Wang
Journal:  Nat Methods       Date:  2009-04       Impact factor: 28.547
  5 in total
  177 in total

1.  LayerCake: a tool for the visual comparison of viral deep sequencing data.

Authors:  Michael Correll; Adam L Bailey; Alper Sarikaya; David H O'Connor; Michael Gleicher
Journal:  Bioinformatics       Date:  2015-07-07       Impact factor: 6.937

2.  Neuroepigenomics: Resources, Obstacles, and Opportunities.

Authors:  John S Satterlee; Andrea Beckel-Mitchener; Roger Little; Dena Procaccini; Joni L Rutter; Amy C Lossie
Journal:  Neuroepigenetics       Date:  2015-01-01

3.  Self-Reporting Transposons Enable Simultaneous Readout of Gene Expression and Transcription Factor Binding in Single Cells.

Authors:  Arnav Moudgil; Michael N Wilkinson; Xuhua Chen; June He; Alexander J Cammack; Michael J Vasek; Tomás Lagunas; Zongtai Qi; Matthew A Lalli; Chuner Guo; Samantha A Morris; Joseph D Dougherty; Robi D Mitra
Journal:  Cell       Date:  2020-07-24       Impact factor: 41.582

Review 4.  Beyond genome-wide significance: integrative approaches to the interpretation and extension of GWAS findings for alcohol use disorder.

Authors:  Jessica E Salvatore; Shizhong Han; Sean P Farris; Kristin M Mignogna; Michael F Miles; Arpana Agrawal
Journal:  Addict Biol       Date:  2018-01-09       Impact factor: 4.280

5.  Selectivity and Kinetic Requirements of HDAC Inhibitors as Progranulin Enhancers for Treating Frontotemporal Dementia.

Authors:  Angela She; Iren Kurtser; Surya A Reis; Krista Hennig; Jenny Lai; Audrey Lang; Wen-Ning Zhao; Ralph Mazitschek; Bradford C Dickerson; Joachim Herz; Stephen J Haggarty
Journal:  Cell Chem Biol       Date:  2017-07-14       Impact factor: 8.116

6.  DNA Rchitect: an R based visualizer for network analysis of chromatin interaction data.

Authors:  R N Ramirez; K Bedirian; S M Gray; A Diallo
Journal:  Bioinformatics       Date:  2020-01-15       Impact factor: 6.937

7.  De novo RNA sequence assembly during in vivo inflammatory stress reveals hundreds of unannotated lincRNAs in human blood CD14+ monocytes and in adipose tissue.

Authors:  Chenyi Xue; Xuan Zhang; Hanrui Zhang; Jane F Ferguson; Ying Wang; Christine C Hinkle; Mingyao Li; Muredach P Reilly
Journal:  Physiol Genomics       Date:  2017-04-07       Impact factor: 3.107

Review 8.  Invited Review: Long non-coding RNAs: important regulators in the development, function and disorders of the central nervous system.

Authors:  R Cuevas-Diaz Duran; H Wei; D H Kim; J Q Wu
Journal:  Neuropathol Appl Neurobiol       Date:  2019-03-04       Impact factor: 8.090

Review 9.  Genetic Moderation of Stress Effects on Corticolimbic Circuitry.

Authors:  Ryan Bogdan; David Pagliaccio; David Aa Baranger; Ahmad R Hariri
Journal:  Neuropsychopharmacology       Date:  2015-07-20       Impact factor: 7.853

10.  Multiplex indexing approach for the detection of DNase I hypersensitive sites in single cells.

Authors:  Weiwu Gao; Wai Lim Ku; Lixia Pan; Jonathan Perrie; Tingting Zhao; Gangqing Hu; Yuzhang Wu; Jun Zhu; Bing Ni; Keji Zhao
Journal:  Nucleic Acids Res       Date:  2021-06-04       Impact factor: 16.971
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