Literature DB >> 22126339

kinITC: a new method for obtaining joint thermodynamic and kinetic data by isothermal titration calorimetry.

Dominique Burnouf1, Eric Ennifar, Sondes Guedich, Barbara Puffer, Guillaume Hoffmann, Guillaume Bec, François Disdier, Mireille Baltzinger, Philippe Dumas.   

Abstract

Isothermal titration calorimetry (ITC) is the method of choice for obtaining thermodynamic data on a great variety of systems. Here we show that modern ITC apparatus and new processing methods allow researchers to obtain a complete kinetic description of systems more diverse than previously thought, ranging from simple ligand binding to complex RNA folding. We illustrate these new features with a simple case (HIV-1 reverse transcriptase/inhibitor interaction) and with the more complex case of the folding of a riboswitch triggered by the binding of its ligand. The originality of the new kinITC method lies in its ability to dissect, both thermodynamically and kinetically, the two components: primary ligand binding and subsequent RNA folding. We are not aware of another single method that can yield, in a simple way, such deep insight into a composite process. Our study also rationalizes common observations from daily ITC use.
© 2011 American Chemical Society

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Year:  2011        PMID: 22126339     DOI: 10.1021/ja209057d

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  44 in total

1.  Measuring the Kinetics of Molecular Association by Isothermal Titration Calorimetry.

Authors:  Kirk A Vander Meulen; Scott Horowitz; Raymond C Trievel; Samuel E Butcher
Journal:  Methods Enzymol       Date:  2015-10-09       Impact factor: 1.600

2.  High-precision isothermal titration calorimetry with automated peak-shape analysis.

Authors:  Sandro Keller; Carolyn Vargas; Huaying Zhao; Grzegorz Piszczek; Chad A Brautigam; Peter Schuck
Journal:  Anal Chem       Date:  2012-05-14       Impact factor: 6.986

Review 3.  Global analysis of riboswitches by small-angle X-ray scattering and calorimetry.

Authors:  Jinwei Zhang; Christopher P Jones; Adrian R Ferré-D'Amaré
Journal:  Biochim Biophys Acta       Date:  2014-04-24

4.  Mapping the Binding Site of an Aptamer on ATP Using MicroScale Thermophoresis.

Authors:  Clemens Entzian; Thomas Schubert
Journal:  J Vis Exp       Date:  2017-01-07       Impact factor: 1.355

5.  Global multi-method analysis of affinities and cooperativity in complex systems of macromolecular interactions.

Authors:  Huaying Zhao; Peter Schuck
Journal:  Anal Chem       Date:  2012-10-16       Impact factor: 6.986

6.  Complete thermodynamic and kinetic characterization of the isomer-specific interaction between Pin1-WW domain and the amyloid precursor protein cytoplasmic tail phosphorylated at Thr668.

Authors:  Soumya De; Alexander I Greenwood; Monique J Rogals; Evgenii L Kovrigin; Kun Ping Lu; Linda K Nicholson
Journal:  Biochemistry       Date:  2012-10-16       Impact factor: 3.162

7.  Isothermal titration calorimetry of membrane proteins - progress and challenges.

Authors:  Krishna Rajarathnam; Jörg Rösgen
Journal:  Biochim Biophys Acta       Date:  2013-06-05

8.  Folding and ligand recognition of the TPP riboswitch aptamer at single-molecule resolution.

Authors:  Andrea Haller; Roger B Altman; Marie F Soulière; Scott C Blanchard; Ronald Micura
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-25       Impact factor: 11.205

9.  Probing the binding mechanisms of α-tocopherol to trypsin and pepsin using isothermal titration calorimetry, spectroscopic, and molecular modeling methods.

Authors:  Xiangrong Li; Tianjun Ni
Journal:  J Biol Phys       Date:  2016-04-19       Impact factor: 1.365

Review 10.  The thermodynamics of protein interactions with essential first row transition metals.

Authors:  Fadi Bou-Abdallah; Thomas R Giffune
Journal:  Biochim Biophys Acta       Date:  2015-11-10
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