Literature DB >> 22123770

Genome sequence of Halobiforma lacisalsi AJ5, an extremely halophilic archaeon which harbors a bop gene.

Xiawei Jiang1, Shuang Wang, Hong Cheng, Yingyi Huo, Xinqi Zhang, Xufen Zhu, Xifang Han, Peixiang Ni, Min Wu.   

Abstract

The draft genome sequence (4,398,155 bp, with 65.35% G+C content) of Halobiforma lacisalsi AJ5, an extremely halophilic archaeon isolated from a salt lake, is reported here. This is the first genome report for a species of the Halobiforma genus.

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Year:  2011        PMID： 22123770      PMCID： PMC3232858          DOI： 10.1128/JB.06282-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  21 in total

1.  KEGG: kyoto encyclopedia of genes and genomes.

Authors:  M Kanehisa; S Goto
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The InterPro database, an integrated documentation resource for protein families, domains and functional sites.

Authors:  R Apweiler; T K Attwood; A Bairoch; A Bateman; E Birney; M Biswas; P Bucher; L Cerutti; F Corpet; M D Croning; R Durbin; L Falquet; W Fleischmann; J Gouzy; H Hermjakob; N Hulo; I Jonassen; D Kahn; A Kanapin; Y Karavidopoulou; R Lopez; B Marx; N J Mulder; T M Oinn; M Pagni; F Servant; C J Sigrist; E M Zdobnov
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

3.  InterProScan--an integration platform for the signature-recognition methods in InterPro.

Authors:  E M Zdobnov; R Apweiler
Journal:  Bioinformatics       Date:  2001-09       Impact factor: 6.937

4.  Rfam: an RNA family database.

Authors:  Sam Griffiths-Jones; Alex Bateman; Mhairi Marshall; Ajay Khanna; Sean R Eddy
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

Review 5.  Optimization of bacteriorhodopsin for bioelectronic devices.

Authors:  Kevin J Wise; Nathan B Gillespie; Jeffrey A Stuart; Mark P Krebs; Robert R Birge
Journal:  Trends Biotechnol       Date:  2002-09       Impact factor: 19.536

6.  Natronobacterium nitratireducens sp. nov., a aloalkaliphilic archaeon isolated from a soda lake in China.

Authors:  H Xin; T Itoh; P Zhou; K Suzuki; T Nakase
Journal:  Int J Syst Evol Microbiol       Date:  2001-09       Impact factor: 2.747

7.  Rhodopsin-like protein from the purple membrane of Halobacterium halobium.

Authors:  D Oesterhelt; W Stoeckenius
Journal:  Nat New Biol       Date:  1971-09-29

8.  Isolation and functional expression of the bop gene from Halobiforma lacisalsi.

Authors:  Peng Zhou; Xue-Wei Xu; Min Wu; Wei-Da Huang; Aharon Oren
Journal:  Microbiol Res       Date:  2007-08-06       Impact factor: 5.415

9.  Characterization of a novel halophilic archaeon, Halobiforma haloterrestris gen. nov., sp. nov., and transfer of Natronobacterium nitratireducens to Halobiforma nitratireducens comb. nov.

Authors:  F F Hezayen; B J Tindall; A Steinbüchel; B H A Rehm
Journal:  Int J Syst Evol Microbiol       Date:  2002-11       Impact factor: 2.747

10.  The Pfam protein families database.

Authors:  Alex Bateman; Lachlan Coin; Richard Durbin; Robert D Finn; Volker Hollich; Sam Griffiths-Jones; Ajay Khanna; Mhairi Marshall; Simon Moxon; Erik L L Sonnhammer; David J Studholme; Corin Yeats; Sean R Eddy
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971
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  2 in total

1.  Biofilm formation of Streptococcus equi ssp. zooepidemicus and comparative proteomic analysis of biofilm and planktonic cells.

Authors:  Li Yi; Yang Wang; Zhe Ma; Hui Zhang; Yue Li; Jun-xi Zheng; Yong-chun Yang; Hong-jie Fan; Cheng-ping Lu
Journal:  Curr Microbiol       Date:  2014-04-03       Impact factor: 2.188

2.  Phylogenetically driven sequencing of extremely halophilic archaea reveals strategies for static and dynamic osmo-response.

Authors:  Erin A Becker; Phillip M Seitzer; Andrew Tritt; David Larsen; Megan Krusor; Andrew I Yao; Dongying Wu; Dominique Madern; Jonathan A Eisen; Aaron E Darling; Marc T Facciotti
Journal:  PLoS Genet       Date:  2014-11-13       Impact factor: 5.917
  2 in total

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