Literature DB >> 22120051

Fine points in mapping autoimmunity.

Constantin Polychronakos1.   

Abstract

An efficient way to design genotyping arrays for fine mapping is to group phenotypes with common biology. The first application of the Immunochip to celiac disease provides an insightful view of what this strategy can achieve.

Entities:  

Mesh：

Year:  2011        PMID： 22120051     DOI： 10.1038/ng.1015

Source DB:  PubMed          Journal:  Nat Genet        ISSN： 1061-4036            Impact factor:   38.330


  7 in total

1.  Statistical significance for genomewide studies.

Authors:  John D Storey; Robert Tibshirani
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-25       Impact factor: 11.205

Review 2.  Detecting shared pathogenesis from the shared genetics of immune-related diseases.

Authors:  Alexandra Zhernakova; Cleo C van Diemen; Cisca Wijmenga
Journal:  Nat Rev Genet       Date:  2009-01       Impact factor: 53.242

3.  Pervasive sharing of genetic effects in autoimmune disease.

Authors:  Chris Cotsapas; Benjamin F Voight; Elizabeth Rossin; Kasper Lage; Benjamin M Neale; Chris Wallace; Gonçalo R Abecasis; Jeffrey C Barrett; Timothy Behrens; Judy Cho; Philip L De Jager; James T Elder; Robert R Graham; Peter Gregersen; Lars Klareskog; Katherine A Siminovitch; David A van Heel; Cisca Wijmenga; Jane Worthington; John A Todd; David A Hafler; Stephen S Rich; Mark J Daly
Journal:  PLoS Genet       Date:  2011-08-10       Impact factor: 5.917

4.  Multiple common variants for celiac disease influencing immune gene expression.

Authors:  Patrick C A Dubois; Gosia Trynka; Lude Franke; Karen A Hunt; Jihane Romanos; Alessandra Curtotti; Alexandra Zhernakova; Graham A R Heap; Róza Adány; Arpo Aromaa; Maria Teresa Bardella; Leonard H van den Berg; Nicholas A Bockett; Emilio G de la Concha; Bárbara Dema; Rudolf S N Fehrmann; Miguel Fernández-Arquero; Szilvia Fiatal; Elvira Grandone; Peter M Green; Harry J M Groen; Rhian Gwilliam; Roderick H J Houwen; Sarah E Hunt; Katri Kaukinen; Dermot Kelleher; Ilma Korponay-Szabo; Kalle Kurppa; Padraic MacMathuna; Markku Mäki; Maria Cristina Mazzilli; Owen T McCann; M Luisa Mearin; Charles A Mein; Muddassar M Mirza; Vanisha Mistry; Barbara Mora; Katherine I Morley; Chris J Mulder; Joseph A Murray; Concepción Núñez; Elvira Oosterom; Roel A Ophoff; Isabel Polanco; Leena Peltonen; Mathieu Platteel; Anna Rybak; Veikko Salomaa; Joachim J Schweizer; Maria Pia Sperandeo; Greetje J Tack; Graham Turner; Jan H Veldink; Wieke H M Verbeek; Rinse K Weersma; Victorien M Wolters; Elena Urcelay; Bozena Cukrowska; Luigi Greco; Susan L Neuhausen; Ross McManus; Donatella Barisani; Panos Deloukas; Jeffrey C Barrett; Paivi Saavalainen; Cisca Wijmenga; David A van Heel
Journal:  Nat Genet       Date:  2010-02-28       Impact factor: 38.330

Review 5.  Finding the missing heritability of complex diseases.

Authors:  Teri A Manolio; Francis S Collins; Nancy J Cox; David B Goldstein; Lucia A Hindorff; David J Hunter; Mark I McCarthy; Erin M Ramos; Lon R Cardon; Aravinda Chakravarti; Judy H Cho; Alan E Guttmacher; Augustine Kong; Leonid Kruglyak; Elaine Mardis; Charles N Rotimi; Montgomery Slatkin; David Valle; Alice S Whittemore; Michael Boehnke; Andrew G Clark; Evan E Eichler; Greg Gibson; Jonathan L Haines; Trudy F C Mackay; Steven A McCarroll; Peter M Visscher
Journal:  Nature       Date:  2009-10-08       Impact factor: 49.962

Review 6.  Promise and pitfalls of the Immunochip.

Authors:  Adrian Cortes; Matthew A Brown
Journal:  Arthritis Res Ther       Date:  2011-02-01       Impact factor: 5.156

7.  Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.

Authors:  Gosia Trynka; Karen A Hunt; Nicholas A Bockett; Jihane Romanos; Vanisha Mistry; Agata Szperl; Sjoerd F Bakker; Maria Teresa Bardella; Leena Bhaw-Rosun; Gemma Castillejo; Emilio G de la Concha; Rodrigo Coutinho de Almeida; Kerith-Rae M Dias; Cleo C van Diemen; Patrick C A Dubois; Richard H Duerr; Sarah Edkins; Lude Franke; Karin Fransen; Javier Gutierrez; Graham A R Heap; Barbara Hrdlickova; Sarah Hunt; Leticia Plaza Izurieta; Valentina Izzo; Leo A B Joosten; Cordelia Langford; Maria Cristina Mazzilli; Charles A Mein; Vandana Midah; Mitja Mitrovic; Barbara Mora; Marinita Morelli; Sarah Nutland; Concepción Núñez; Suna Onengut-Gumuscu; Kerra Pearce; Mathieu Platteel; Isabel Polanco; Simon Potter; Carmen Ribes-Koninckx; Isis Ricaño-Ponce; Stephen S Rich; Anna Rybak; José Luis Santiago; Sabyasachi Senapati; Ajit Sood; Hania Szajewska; Riccardo Troncone; Jezabel Varadé; Chris Wallace; Victorien M Wolters; Alexandra Zhernakova; B K Thelma; Bozena Cukrowska; Elena Urcelay; Jose Ramon Bilbao; M Luisa Mearin; Donatella Barisani; Jeffrey C Barrett; Vincent Plagnol; Panos Deloukas; Cisca Wijmenga; David A van Heel
Journal:  Nat Genet       Date:  2011-11-06       Impact factor: 38.330
  7 in total
  10 in total

Review 1.  Pathogenesis of Systemic Sclerosis.

Authors:  Debendra Pattanaik; Monica Brown; Bradley C Postlethwaite; Arnold E Postlethwaite
Journal:  Front Immunol       Date:  2015-06-08       Impact factor: 7.561

2.  Regulatory annotation of genomic intervals based on tissue-specific expression QTLs.

Authors:  Tianlei Xu; Peng Jin; Zhaohui S Qin
Journal:  Bioinformatics       Date:  2020-02-01       Impact factor: 6.937

Review 3.  Genetics of systemic sclerosis.

Authors:  Yuki Ishikawa; Chikashi Terao
Journal:  J Scleroderma Relat Disord       Date:  2020-04-19

4.  Genetic associations at regulatory phenotypes improve fine-mapping of causal variants for 12 immune-mediated diseases.

Authors:  Kousik Kundu; Manuel Tardaguila; Alice L Mann; Stephen Watt; Hannes Ponstingl; Louella Vasquez; Dominique Von Schiller; Nicholas W Morrell; Oliver Stegle; Tomi Pastinen; Stephen J Sawcer; Carl A Anderson; Klaudia Walter; Nicole Soranzo
Journal:  Nat Genet       Date:  2022-03-14       Impact factor: 41.307

5.  A practical and novel method to extract genomic DNA from blood collection kits for plasma protein preservation.

Authors:  Jon Waters; Vishal Dhere; Adam Benjamin; Arvind Sekar; Archana Kumar; Sampath Prahalad; David T Okou; Subra Kugathasan
Journal:  J Vis Exp       Date:  2013-05-18       Impact factor: 1.355

6.  Immunochip analysis identifies multiple susceptibility loci for systemic sclerosis.

Authors:  Maureen D Mayes; Lara Bossini-Castillo; Olga Gorlova; José Ezequiel Martin; Xiaodong Zhou; Wei V Chen; Shervin Assassi; Jun Ying; Filemon K Tan; Frank C Arnett; John D Reveille; Sandra Guerra; María Teruel; Francisco David Carmona; Peter K Gregersen; Annette T Lee; Elena López-Isac; Eguzkine Ochoa; Patricia Carreira; Carmen Pilar Simeón; Iván Castellví; Miguel Ángel González-Gay; Alexandra Zhernakova; Leonid Padyukov; Marta Alarcón-Riquelme; Cisca Wijmenga; Matthew Brown; Lorenzo Beretta; Gabriela Riemekasten; Torsten Witte; Nicolas Hunzelmann; Alexander Kreuter; Jörg H W Distler; Alexandre E Voskuyl; Annemie J Schuerwegh; Roger Hesselstrand; Annika Nordin; Paolo Airó; Claudio Lunardi; Paul Shiels; Jacob M van Laar; Ariane Herrick; Jane Worthington; Christopher Denton; Fredrick M Wigley; Laura K Hummers; John Varga; Monique E Hinchcliff; Murray Baron; Marie Hudson; Janet E Pope; Daniel E Furst; Dinesh Khanna; Kristin Phillips; Elena Schiopu; Barbara M Segal; Jerry A Molitor; Richard M Silver; Virginia D Steen; Robert W Simms; Robert A Lafyatis; Barri J Fessler; Tracy M Frech; Firas Alkassab; Peter Docherty; Elzbieta Kaminska; Nader Khalidi; Henry Niall Jones; Janet Markland; David Robinson; Jasper Broen; Timothy R D J Radstake; Carmen Fonseca; Bobby P Koeleman; Javier Martin
Journal:  Am J Hum Genet       Date:  2014-01-02       Impact factor: 11.025

7.  Host genetics and immune control of HIV-1 infection: fine mapping for the extended human MHC region in an African cohort.

Authors:  H A Prentice; N M Pajewski; D He; K Zhang; E E Brown; W Kilembe; S Allen; E Hunter; R A Kaslow; J Tang
Journal:  Genes Immun       Date:  2014-05-01       Impact factor: 2.676

8.  Regulation of Fn14 Receptor and NF-κB Underlies Inflammation in Meniere's Disease.

Authors:  Lidia Frejo; Teresa Requena; Satoshi Okawa; Alvaro Gallego-Martinez; Manuel Martinez-Bueno; Ismael Aran; Angel Batuecas-Caletrio; Jesus Benitez-Rosario; Juan M Espinosa-Sanchez; Jesus José Fraile-Rodrigo; Ana María García-Arumi; Rocío González-Aguado; Pedro Marques; Eduardo Martin-Sanz; Nicolas Perez-Fernandez; Paz Pérez-Vázquez; Herminio Perez-Garrigues; Sofía Santos-Perez; Andres Soto-Varela; Maria C Tapia; Gabriel Trinidad-Ruiz; Antonio Del Sol; Marta E Alarcon Riquelme; Jose A Lopez-Escamez
Journal:  Front Immunol       Date:  2017-12-13       Impact factor: 7.561

Review 9.  Approaching Shared Pathophysiology in Immune-Mediated Diseases through Functional Genomics.

Authors:  David González-Serna; Gonzalo Villanueva-Martin; Marialbert Acosta-Herrera; Ana Márquez; Javier Martín
Journal:  Genes (Basel)       Date:  2020-12-09       Impact factor: 4.096

10.  Admixture mapping in lupus identifies multiple functional variants within IFIH1 associated with apoptosis, inflammation, and autoantibody production.

Authors:  Julio E Molineros; Amit K Maiti; Celi Sun; Loren L Looger; Shizhong Han; Xana Kim-Howard; Stuart Glenn; Adam Adler; Jennifer A Kelly; Timothy B Niewold; Gary S Gilkeson; Elizabeth E Brown; Graciela S Alarcón; Jeffrey C Edberg; Michelle Petri; Rosalind Ramsey-Goldman; John D Reveille; Luis M Vilá; Barry I Freedman; Betty P Tsao; Lindsey A Criswell; Chaim O Jacob; Jason H Moore; Timothy J Vyse; Carl L Langefeld; Joel M Guthridge; Patrick M Gaffney; Kathy L Moser; R Hal Scofield; Marta E Alarcón-Riquelme; Scott M Williams; Joan T Merrill; Judith A James; Kenneth M Kaufman; Robert P Kimberly; John B Harley; Swapan K Nath
Journal:  PLoS Genet       Date:  2013-02-18       Impact factor: 5.917
  10 in total

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