Literature DB >> 22118674

Activity-based chemical proteomics accelerates inhibitor development for deubiquitylating enzymes.

Mikael Altun1, Holger B Kramer, Lianne I Willems, Jeffrey L McDermott, Craig A Leach, Seth J Goldenberg, K G Suresh Kumar, Rebecca Konietzny, Roman Fischer, Edward Kogan, Mukram M Mackeen, Joanna McGouran, Svetlana V Khoronenkova, Jason L Parsons, Grigory L Dianov, Benjamin Nicholson, Benedikt M Kessler.   

Abstract

Converting lead compounds into drug candidates is a crucial step in drug development, requiring early assessment of potency, selectivity, and off-target effects. We have utilized activity-based chemical proteomics to determine the potency and selectivity of deubiquitylating enzyme (DUB) inhibitors in cell culture models. Importantly, we characterized the small molecule PR-619 as a broad-range DUB inhibitor, and P22077 as a USP7 inhibitor with potential for further development as a chemotherapeutic agent in cancer therapy. A striking accumulation of polyubiquitylated proteins was observed after both selective and general inhibition of cellular DUB activity without direct impairment of proteasomal proteolysis. The repertoire of ubiquitylated substrates was analyzed by tandem mass spectrometry, identifying distinct subsets for general or specific inhibition of DUBs. This enabled identification of previously unknown functional links between USP7 and enzymes involved in DNA repair.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 22118674     DOI: 10.1016/j.chembiol.2011.08.018

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  154 in total

Review 1.  USP7: Structure, substrate specificity, and inhibition.

Authors:  Alexandra Pozhidaeva; Irina Bezsonova
Journal:  DNA Repair (Amst)       Date:  2019-02-16

2.  Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.

Authors:  Namrata D Udeshi; D R Mani; Thomas Eisenhaure; Philipp Mertins; Jacob D Jaffe; Karl R Clauser; Nir Hacohen; Steven A Carr
Journal:  Mol Cell Proteomics       Date:  2012-04-14       Impact factor: 5.911

3.  Deubiquitination of Tip60 by USP7 determines the activity of the p53-dependent apoptotic pathway.

Authors:  Ashraf Dar; Etsuko Shibata; Anindya Dutta
Journal:  Mol Cell Biol       Date:  2013-06-17       Impact factor: 4.272

Review 4.  Otubain 1: a non-canonical deubiquitinase with an emerging role in cancer.

Authors:  Matthew Saldana; Kacey VanderVorst; Anastasia L Berg; Hyun Lee; Kermit L Carraway
Journal:  Endocr Relat Cancer       Date:  2019-01-01       Impact factor: 5.678

5.  USP7 controls Chk1 protein stability by direct deubiquitination.

Authors:  Ignacio Alonso-de Vega; Yusé Martín; Veronique A J Smits
Journal:  Cell Cycle       Date:  2014       Impact factor: 4.534

6.  Ceylonins G-I: spongian diterpenes from the marine sponge Spongia ceylonensis.

Authors:  Ahmed H El-Desoky; Hikaru Kato; Sachiko Tsukamoto
Journal:  J Nat Med       Date:  2017-05-03       Impact factor: 2.343

7.  Post-translational O-GlcNAcylation is essential for nuclear pore integrity and maintenance of the pore selectivity filter.

Authors:  Yanping Zhu; Ta-Wei Liu; Zarina Madden; Scott A Yuzwa; Kelsey Murray; Samy Cecioni; Natasha Zachara; David J Vocadlo
Journal:  J Mol Cell Biol       Date:  2015-06-01       Impact factor: 6.216

Review 8.  Overview of proteasome inhibitor-based anti-cancer therapies: perspective on bortezomib and second generation proteasome inhibitors versus future generation inhibitors of ubiquitin-proteasome system.

Authors:  Q Ping Dou; Jeffrey A Zonder
Journal:  Curr Cancer Drug Targets       Date:  2014       Impact factor: 3.428

Review 9.  Targeting the ubiquitin-mediated proteasome degradation of p53 for cancer therapy.

Authors:  Tiffany Devine; Mu-Shui Dai
Journal:  Curr Pharm Des       Date:  2013       Impact factor: 3.116

Review 10.  Deubiquitinating enzymes as promising drug targets for infectious diseases.

Authors:  Bindu Nanduri; Akamol E Suvarnapunya; Malabi Venkatesan; Mariola J Edelmann
Journal:  Curr Pharm Des       Date:  2013       Impact factor: 3.116

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