Literature DB >> 22112450

Transcriptional and metabolic programs following exposure of plants to UV-B irradiation.

Takayuki Tohge1, Miyako Kusano, Atsushi Fukushima, Kazuki Saito, Alisdair R Fernie.   

Abstract

In order to adapt to environmental changes of light species and intensity, higher plants furnish complicate signaling systems such as the UVR/COP/HY5 cascade which links several diverse classes of photoreceptors. In addition UV-B light provokes accelerated production of UV-B protectants such as flavonoids and vitamins. Following intensive research efforts, genes in the UV-B signaling cascade have been characterized via forward genetics approaches following mutant screens relying on sensitivity to UV-B irradiation. However detailed processes of the linkage between light signaling and the upregulation of metabolite accumulation remain unclear. Here we review both the light signal cascades and metabolite pathways responding to UV-B exposure. Finally we generate co-expression network analysis using published data in order to find novel candidate genes which link light signaling and transcriptional regulation to metabolic biosynthesis in attempt to describe how these processes are interlinked.
© 2011 Landes Bioscience

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Year:  2011        PMID: 22112450      PMCID: PMC3337192          DOI: 10.4161/psb.6.12.18240

Source DB:  PubMed          Journal:  Plant Signal Behav        ISSN: 1559-2316


  31 in total

1.  Genome-wide analysis of gene expression reveals function of the bZIP transcription factor HY5 in the UV-B response of Arabidopsis.

Authors:  Roman Ulm; Alexander Baumann; Attila Oravecz; Zoltán Máté; Eva Adám; Edward J Oakeley; Eberhard Schäfer; Ferenc Nagy
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-22       Impact factor: 11.205

2.  PlaNet: combined sequence and expression comparisons across plant networks derived from seven species.

Authors:  Marek Mutwil; Sebastian Klie; Takayuki Tohge; Federico M Giorgi; Olivia Wilkins; Malcolm M Campbell; Alisdair R Fernie; Björn Usadel; Zoran Nikoloski; Staffan Persson
Journal:  Plant Cell       Date:  2011-03-25       Impact factor: 11.277

3.  Suppression of both ELIP1 and ELIP2 in Arabidopsis does not affect tolerance to photoinhibition and photooxidative stress.

Authors:  Silvia Rossini; Anna Paola Casazza; Enrico C M Engelmann; Michel Havaux; Robert C Jennings; Carlo Soave
Journal:  Plant Physiol       Date:  2006-06-15       Impact factor: 8.340

4.  CONSTITUTIVELY PHOTOMORPHOGENIC1 is required for the UV-B response in Arabidopsis.

Authors:  Attila Oravecz; Alexander Baumann; Zoltán Máté; Agnieszka Brzezinska; Jean Molinier; Edward J Oakeley; Eva Adám; Eberhard Schäfer; Ferenc Nagy; Roman Ulm
Journal:  Plant Cell       Date:  2006-07-07       Impact factor: 11.277

5.  The protective functions of carotenoid and flavonoid pigments against excess visible radiation at chilling temperature investigated in Arabidopsis npq and tt mutants.

Authors:  M Harvaux; K Kloppstech
Journal:  Planta       Date:  2001-10       Impact factor: 4.116

6.  CoP: a database for characterizing co-expressed gene modules with biological information in plants.

Authors:  Yoshiyuki Ogata; Hideyuki Suzuki; Nozomu Sakurai; Daisuke Shibata
Journal:  Bioinformatics       Date:  2010-03-19       Impact factor: 6.937

7.  Gene expression profiling in response to ultraviolet radiation in maize genotypes with varying flavonoid content.

Authors:  Paula Casati; Virginia Walbot
Journal:  Plant Physiol       Date:  2003-08       Impact factor: 8.340

8.  Arabidopsis Flavonoid Mutants Are Hypersensitive to UV-B Irradiation.

Authors:  J. Li; T. M. Ou-Lee; R. Raba; R. G. Amundson; R. L. Last
Journal:  Plant Cell       Date:  1993-02       Impact factor: 11.277

9.  Interaction of COP1 and UVR8 regulates UV-B-induced photomorphogenesis and stress acclimation in Arabidopsis.

Authors:  Jean-Jacques Favory; Agnieszka Stec; Henriette Gruber; Luca Rizzini; Attila Oravecz; Markus Funk; Andreas Albert; Catherine Cloix; Gareth I Jenkins; Edward J Oakeley; Harald K Seidlitz; Ferenc Nagy; Roman Ulm
Journal:  EMBO J       Date:  2009-01-22       Impact factor: 11.598

10.  UV-B signaling pathways with different fluence-rate response profiles are distinguished in mature Arabidopsis leaf tissue by requirement for UVR8, HY5, and HYH.

Authors:  Bobby A Brown; Gareth I Jenkins
Journal:  Plant Physiol       Date:  2007-11-30       Impact factor: 8.340

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  15 in total

1.  Plant biology: Pigments on the move.

Authors:  Diane C Bassham
Journal:  Nature       Date:  2015-10-29       Impact factor: 49.962

2.  Tissue specificity and differential expression of transcription factors in tomato provide hints of unique regulatory networks during fruit ripening.

Authors:  Johannes Rohrmann; Ryan McQuinn; James J Giovannoni; Alisdair R Fernie; Takayuki Tohge
Journal:  Plant Signal Behav       Date:  2012-10-16

3.  Heterologous expression of AtMYB12 in kale (Brassica oleracea var. acephala) leads to high flavonol accumulation.

Authors:  Mika Lännenpää
Journal:  Plant Cell Rep       Date:  2014-05-04       Impact factor: 4.570

4.  Extrapolation of significant genes and transcriptional regulatory networks involved in Zea mays in response in UV-B stress.

Authors:  Saurabh Gupta; Vikas Gupta; Vishal Singh; Pritish Kumar Varadwaj
Journal:  Genes Genomics       Date:  2018-05-31       Impact factor: 1.839

5.  Auxin and Tryptophan Homeostasis Are Facilitated by the ISS1/VAS1 Aromatic Aminotransferase in Arabidopsis.

Authors:  Michael Pieck; Youxi Yuan; Jason Godfrey; Christopher Fisher; Sanda Zolj; Dylan Vaughan; Nicholas Thomas; Connie Wu; Julian Ramos; Norman Lee; Jennifer Normanly; John L Celenza
Journal:  Genetics       Date:  2015-07-10       Impact factor: 4.562

6.  Annotation of plant gene function via combined genomics, metabolomics and informatics.

Authors:  Takayuki Tohge; Alisdair R Fernie
Journal:  J Vis Exp       Date:  2012-06-17       Impact factor: 1.355

7.  Co-expression and co-responses: within and beyond transcription.

Authors:  Takayuki Tohge; Alisdair R Fernie
Journal:  Front Plant Sci       Date:  2012-11-08       Impact factor: 5.753

8.  Characterization of the Arabidopsis thaliana E3 ubiquitin-ligase AtSINAL7 and identification of the ubiquitination sites.

Authors:  Diego A Peralta; Alejandro Araya; Cristina F Nardi; Maria V Busi; Diego F Gomez-Casati
Journal:  PLoS One       Date:  2013-08-28       Impact factor: 3.240

Review 9.  Lignin, mitochondrial family, and photorespiratory transporter classification as case studies in using co-expression, co-response, and protein locations to aid in identifying transport functions.

Authors:  Takayuki Tohge; Alisdair R Fernie
Journal:  Front Plant Sci       Date:  2014-03-17       Impact factor: 5.753

Review 10.  The use of metabolomics to dissect plant responses to abiotic stresses.

Authors:  Toshihiro Obata; Alisdair R Fernie
Journal:  Cell Mol Life Sci       Date:  2012-08-12       Impact factor: 9.261

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