Literature DB >> 30155715

Extrapolation of significant genes and transcriptional regulatory networks involved in Zea mays in response in UV-B stress.

Saurabh Gupta1, Vikas Gupta2, Vishal Singh1, Pritish Kumar Varadwaj3.   

Abstract

A wide range of plant species growth influenced when they exposed to solar UV-B radiation. Leaves of the plant are highly affected by UV-B radiation lead to the reduction in the growth of the plant. Current work demonstrates the comparative transcriptional changes and visible symptoms occurred in the maize leaf growth zone (GZ). Primary objective of this study was to identify differentially expressed genes (DEGs) responsible for leaf growth and their association in the transcriptional regulatory network under UV-B stress. Whole transcriptomic data was analysed and the quality check was tested for each sample and further genome-wide mapping and DEGs were performed. Gene Ontology (GO) based functional annotation, associated transcriptional networks and molecular pathways were annotated. Reduction in cell production due to UV-B stress causes a decrease in leaf's length and size was observed. Further, the specific role of the DEGs, in UV-B signalling pathways and other molecular functions responsible for leaf cell death was discovered. Results also infer that the major changes occurred in the cell cycle, transcriptional regulation, post-transcriptional modification, phytohormones, flavonoids biosynthesis, and chromatin remodeling. UV-B signalling pathways and the transcriptional regulatory networks infer the different molecular steps along with downstream transcriptional and post-transcriptional control of metabolic enzymes used in long-term memory adoption and attainment resistance to UV-B stress identified. Effects of UV-B radiation on leaf growth was noted in this study. UV-B stress response genes and associated transcriptional regulatory networks were identified, can be used in developing the marker assist UB-B stress tolerant genotypes of the maize.

Entities:  

Keywords:  COP1; MAPK pathways; Maize; UV-B stress; UVR8

Mesh:

Year:  2018        PMID: 30155715     DOI: 10.1007/s13258-018-0705-1

Source DB:  PubMed          Journal:  Genes Genomics        ISSN: 1976-9571            Impact factor:   1.839


  57 in total

Review 1.  Impacts of solar ultraviolet-B radiation on terrestrial ecosystems of Tierra del Fuego (southern Argentina). An overview of recent progress.

Authors:  C L Ballaré; M C Rousseau; P S Searles; J G Zaller; C V Giordano; T M Robson; M M Caldwell; O E Sala; A L Scopel
Journal:  J Photochem Photobiol B       Date:  2001-09-01       Impact factor: 6.252

Review 2.  Effect of gamma and UV-B/C radiation on plant cells.

Authors:  E Kovács; A Keresztes
Journal:  Micron       Date:  2002       Impact factor: 2.251

3.  Exit from proliferation during leaf development in Arabidopsis thaliana: a not-so-gradual process.

Authors:  Megan Andriankaja; Stijn Dhondt; Stefanie De Bodt; Hannes Vanhaeren; Frederik Coppens; Liesbeth De Milde; Per Mühlenbock; Aleksandra Skirycz; Nathalie Gonzalez; Gerrit T S Beemster; Dirk Inzé
Journal:  Dev Cell       Date:  2012-01-05       Impact factor: 12.270

4.  UV-B Inhibits Leaf Growth through Changes in Growth Regulating Factors and Gibberellin Levels.

Authors:  Julieta Fina; Romina Casadevall; Hamada AbdElgawad; Els Prinsen; Marios N Markakis; Gerrit T S Beemster; Paula Casati
Journal:  Plant Physiol       Date:  2017-04-11       Impact factor: 8.340

5.  Ultraviolet radiation as a limiting factor in leaf expansion and development.

Authors:  Jason J Wargent; Jason P Moore; A Roland Ennos; Nigel D Paul
Journal:  Photochem Photobiol       Date:  2008-08-27       Impact factor: 3.421

6.  Genome-wide analysis of miRNAs and Tasi-RNAs in Zea mays in response to phosphate deficiency.

Authors:  Saurabh Gupta; Manju Kumari; Himansu Kumar; Pritish Kumar Varadwaj
Journal:  Funct Integr Genomics       Date:  2017-01-09       Impact factor: 3.410

7.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

8.  Gene expression profiling in response to ultraviolet radiation in maize genotypes with varying flavonoid content.

Authors:  Paula Casati; Virginia Walbot
Journal:  Plant Physiol       Date:  2003-08       Impact factor: 8.340

9.  Extrapolation of Inter Domain Communications and Substrate Binding Cavity of Camel HSP70 1A: A Molecular Modeling and Dynamics Simulation Study.

Authors:  Saurabh Gupta; Atmakuri Ramakrishna Rao; Pritish Kumar Varadwaj; Sachinandan De; Trilochan Mohapatra
Journal:  PLoS One       Date:  2015-08-27       Impact factor: 3.240

10.  Isolation and characterization of three cassava elongation factor 1 alpha (MeEF1A) promoters.

Authors:  Sony Suhandono; Ardha Apriyanto; Nisa Ihsani
Journal:  PLoS One       Date:  2014-01-03       Impact factor: 3.240

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  2 in total

1.  Deciphering genome-wide WRKY gene family of Triticum aestivum L. and their functional role in response to Abiotic stress.

Authors:  Saurabh Gupta; Vinod Kumar Mishra; Sunita Kumari; Ramesh Chand; Pritish Kumar Varadwaj
Journal:  Genes Genomics       Date:  2018-09-20       Impact factor: 1.839

2.  Deciphering the transcriptomic insight during organogenesis in Castor (Ricinus communis L.), Jatropha (Jatropha curcas L.) and Sunflower (Helianthus annuus L.).

Authors:  Sai Sudha Puvvala; Tarakeswari Muddanuru; Padmavathi A V Thangella; O Aniel Kumar; Navajeet Chakravartty; Vineeth Kodengil Vettath; A V S K Mohan Katta; Sivarama Prasad Lekkala; Boney Kuriakose; Saurabh Gupta; Sujatha Mulpuri; Vijaya Bhaskar Reddy Lachagari
Journal:  3 Biotech       Date:  2019-11-01       Impact factor: 2.406

  2 in total

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