Literature DB >> 22106047

Sites of ubiquitin attachment in Saccharomyces cerevisiae.

Lea M Starita1, Russell S Lo, Jimmy K Eng, Priska D von Haller, Stanley Fields.   

Abstract

Sites of ubiquitin modification have been identified by mass spectrometry based on the increase in molecular mass of a tryptic peptide carrying two additional glycine residues from the ubiquitin moiety. However, such peptides with GG shifts have been difficult to discover. We identify 870 unique sites of ubiquitin attachment on 438 different proteins of the yeast Saccharomyces cerevisiae.
Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

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Year:  2011        PMID: 22106047      PMCID: PMC3337332          DOI: 10.1002/pmic.201100166

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  19 in total

Review 1.  Ubiquitin: structures, functions, mechanisms.

Authors:  Cecile M Pickart; Michael J Eddins
Journal:  Biochim Biophys Acta       Date:  2004-11-29

2.  Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations.

Authors:  Joshua E Elias; Wilhelm Haas; Brendan K Faherty; Steven P Gygi
Journal:  Nat Methods       Date:  2005-09       Impact factor: 28.547

3.  Rad6-dependent ubiquitination of histone H2B in yeast.

Authors:  K Robzyk; J Recht; M A Osley
Journal:  Science       Date:  2000-01-21       Impact factor: 47.728

Review 4.  The ubiquitin-proteasome proteolytic pathway.

Authors:  A Ciechanover
Journal:  Cell       Date:  1994-10-07       Impact factor: 41.582

5.  Mms2-Ubc13 covalently bound to ubiquitin reveals the structural basis of linkage-specific polyubiquitin chain formation.

Authors:  Michael J Eddins; Candice M Carlile; Kamila M Gomez; Cecile M Pickart; Cynthia Wolberger
Journal:  Nat Struct Mol Biol       Date:  2006-09-17       Impact factor: 15.369

6.  Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling.

Authors:  Guoqiang Xu; Jeremy S Paige; Samie R Jaffrey
Journal:  Nat Biotechnol       Date:  2010-07-18       Impact factor: 54.908

7.  Solution structure of the flexible class II ubiquitin-conjugating enzyme Ubc1 provides insights for polyubiquitin chain assembly.

Authors:  Nadine Merkley; Gary S Shaw
Journal:  J Biol Chem       Date:  2004-08-24       Impact factor: 5.157

8.  Identification of alternative products and optimization of 2-nitro-5-thiocyanatobenzoic acid cyanylation and cleavage at cysteine residues.

Authors:  Hsin-Yao Tang; David W Speicher
Journal:  Anal Biochem       Date:  2004-11-01       Impact factor: 3.365

9.  Tertiary structures of class I ubiquitin-conjugating enzymes are highly conserved: crystal structure of yeast Ubc4.

Authors:  W J Cook; L C Jeffrey; Y Xu; V Chau
Journal:  Biochemistry       Date:  1993-12-21       Impact factor: 3.162

10.  A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.

Authors:  Sebastian A Wagner; Petra Beli; Brian T Weinert; Michael L Nielsen; Jürgen Cox; Matthias Mann; Chunaram Choudhary
Journal:  Mol Cell Proteomics       Date:  2011-09-01       Impact factor: 5.911

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  24 in total

Review 1.  Characterizing ubiquitination sites by peptide-based immunoaffinity enrichment.

Authors:  Daisy Bustos; Corey E Bakalarski; Yanling Yang; Junmin Peng; Donald S Kirkpatrick
Journal:  Mol Cell Proteomics       Date:  2012-06-23       Impact factor: 5.911

2.  ETD Outperforms CID and HCD in the Analysis of the Ubiquitylated Proteome.

Authors:  Tanya R Porras-Yakushi; Michael J Sweredoski; Sonja Hess
Journal:  J Am Soc Mass Spectrom       Date:  2015-05-21       Impact factor: 3.109

3.  Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis.

Authors:  Chan Hyun Na; Drew R Jones; Yanling Yang; Xusheng Wang; Yanji Xu; Junmin Peng
Journal:  J Proteome Res       Date:  2012-08-15       Impact factor: 4.466

Review 4.  Proteomic identification of protein ubiquitination events.

Authors:  Guoqiang Xu; Samie R Jaffrey
Journal:  Biotechnol Genet Eng Rev       Date:  2013

5.  Global site-specific neddylation profiling reveals that NEDDylated cofilin regulates actin dynamics.

Authors:  Annette M Vogl; Lilian Phu; Raquel Becerra; Sebastian A Giusti; Erik Verschueren; Trent B Hinkle; Martín D Bordenave; Max Adrian; Amy Heidersbach; Patricio Yankilevich; Fernando D Stefani; Wolfgang Wurst; Casper C Hoogenraad; Donald S Kirkpatrick; Damian Refojo; Morgan Sheng
Journal:  Nat Struct Mol Biol       Date:  2020-02-03       Impact factor: 15.369

6.  Polyubiquitin Chains Linked by Lysine Residue 48 (K48) Selectively Target Oxidized Proteins In Vivo.

Authors:  Sandhya Manohar; Samson Jacob; Jade Wang; Keira A Wiechecki; Hiromi W L Koh; Vanessa Simões; Hyungwon Choi; Christine Vogel; Gustavo M Silva
Journal:  Antioxid Redox Signal       Date:  2019-11-20       Impact factor: 8.401

7.  Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation.

Authors:  Danielle L Swaney; Pedro Beltrao; Lea Starita; Ailan Guo; John Rush; Stanley Fields; Nevan J Krogan; Judit Villén
Journal:  Nat Methods       Date:  2013-06-09       Impact factor: 28.547

8.  Select α-arrestins control cell-surface abundance of the mammalian Kir2.1 potassium channel in a yeast model.

Authors:  Natalie A Hager; Collin J Krasowski; Timothy D Mackie; Alexander R Kolb; Patrick G Needham; Andrew A Augustine; Alison Dempsey; Christopher Szent-Gyorgyi; Marcel P Bruchez; Daniel J Bain; Adam V Kwiatkowski; Allyson F O'Donnell; Jeffrey L Brodsky
Journal:  J Biol Chem       Date:  2018-05-21       Impact factor: 5.157

9.  Site-Specific K63 Ubiquitinomics Provides Insights into Translation Regulation under Stress.

Authors:  Songhee Back; Andrew W Gorman; Christine Vogel; Gustavo M Silva
Journal:  J Proteome Res       Date:  2018-12-10       Impact factor: 4.466

10.  Coupling of septins to the axial landmark by Bud4 in budding yeast.

Authors:  Pil Jung Kang; Jennifer K Hood-DeGrenier; Hay-Oak Park
Journal:  J Cell Sci       Date:  2013-01-23       Impact factor: 5.285

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