Literature DB >> 22105743

Crystal structure of homoisocitrate dehydrogenase from Schizosaccharomyces pombe.

Stacie L Bulfer1, Jenna M Hendershot, Raymond C Trievel.   

Abstract

Homoisocitrate dehydrogenase (HICDH) catalyzes the conversion of homoisocitrate to 2-oxoadipate, the third enzymatic step in the α-aminoadipate pathway by which lysine is synthesized in fungi and certain archaebacteria. This enzyme represents a potential target for anti-fungal drug design. Here, we describe the first crystal structures of a fungal HICDH, including structures of an apoenzyme and a binary complex with a glycine tri-peptide. The structures illustrate the homology of HICDH with other β-hydroxyacid oxidative decarboxylases and reveal key differences with the active site of Thermus thermophilus HICDH that provide insights into the differences in substrate specificity of these enzymes.

Entities:  

Keywords:  X-ray crystallography; amino acid metabolism; lysine biosynthesis; β-hydroxyacid oxidative decarboxylase

Mesh:

Substances:

Year:  2011        PMID: 22105743      PMCID: PMC4332711          DOI: 10.1002/prot.23231

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  24 in total

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Authors:  Hengyu Xu; Babak Andi; Jinghua Qian; Ann H West; Paul F Cook
Journal:  Cell Biochem Biophys       Date:  2006       Impact factor: 2.194

2.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

3.  Substrate recognition of isocitrate dehydrogenase and 3-isopropylmalate dehydrogenase from Thermus thermophilus HB8.

Authors:  T Yaoi; K Miyazaki; T Oshima
Journal:  J Biochem       Date:  1997-01       Impact factor: 3.387

4.  Structure of 3-isopropylmalate dehydrogenase in complex with 3-isopropylmalate at 2.0 A resolution: the role of Glu88 in the unique substrate-recognition mechanism.

Authors:  K Imada; K Inagaki; H Matsunami; H Kawaguchi; H Tanaka; N Tanaka; K Namba
Journal:  Structure       Date:  1998-08-15       Impact factor: 5.006

5.  Regulation of an enzyme by phosphorylation at the active site.

Authors:  J H Hurley; A M Dean; J L Sohl; D E Koshland; R M Stroud
Journal:  Science       Date:  1990-08-31       Impact factor: 47.728

6.  Characterization of homoisocitrate dehydrogenase involved in lysine biosynthesis of an extremely thermophilic bacterium, Thermus thermophilus HB27, and evolutionary implication of beta-decarboxylating dehydrogenase.

Authors:  Junichi Miyazaki; Nobuyuki Kobashi; Makoto Nishiyama; Hisakazu Yamane
Journal:  J Biol Chem       Date:  2002-11-08       Impact factor: 5.157

7.  Crystal structure of tetrameric homoisocitrate dehydrogenase from an extreme thermophile, Thermus thermophilus: involvement of hydrophobic dimer-dimer interaction in extremely high thermotolerance.

Authors:  Junichi Miyazaki; Kuniko Asada; Shinya Fushinobu; Tomohisa Kuzuyama; Makoto Nishiyama
Journal:  J Bacteriol       Date:  2005-10       Impact factor: 3.490

8.  A lysine-tyrosine pair carries out acid-base chemistry in the metal ion-dependent pyridine dinucleotide-linked beta-hydroxyacid oxidative decarboxylases.

Authors:  Deniz F Aktas; Paul F Cook
Journal:  Biochemistry       Date:  2009-04-28       Impact factor: 3.162

9.  Structure of 3-isopropylmalate dehydrogenase in complex with NAD+: ligand-induced loop closing and mechanism for cofactor specificity.

Authors:  J H Hurley; A M Dean
Journal:  Structure       Date:  1994-11-15       Impact factor: 5.006

10.  MolProbity: all-atom contacts and structure validation for proteins and nucleic acids.

Authors:  Ian W Davis; Andrew Leaver-Fay; Vincent B Chen; Jeremy N Block; Gary J Kapral; Xueyi Wang; Laura W Murray; W Bryan Arendall; Jack Snoeyink; Jane S Richardson; David C Richardson
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

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  3 in total

1.  Evidence for an induced conformational change in the catalytic mechanism of homoisocitrate dehydrogenase for Saccharomyces cerevisiae: Characterization of the D271N mutant enzyme.

Authors:  Chaonan Hsu; Ann H West; Paul F Cook
Journal:  Arch Biochem Biophys       Date:  2015-08-29       Impact factor: 4.013

2.  Enzyme redesign guided by cancer-derived IDH1 mutations.

Authors:  Zachary J Reitman; Bryan D Choi; Ivan Spasojevic; Darell D Bigner; John H Sampson; Hai Yan
Journal:  Nat Chem Biol       Date:  2012-09-23       Impact factor: 15.040

3.  Antifungal activity of homoaconitate and homoisocitrate analogs.

Authors:  Maria J Milewska; Marta Prokop; Iwona Gabriel; Marek Wojciechowski; Sławomir Milewski
Journal:  Molecules       Date:  2012-11-27       Impact factor: 4.411

  3 in total

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