Literature DB >> 22102023

Structure of PA4019, a putative aromatic acid decarboxylase from Pseudomonas aeruginosa.

Jolanta Kopec1, Robert Schnell, Gunter Schneider.   

Abstract

The ubiX gene (PA4019) of Pseudomonas aeruginosa has been annotated as encoding a putative 3-octaprenyl-4-hydroxybenzoate decarboxylase from the ubiquinone-biosynthesis pathway. Based on a transposon mutagenesis screen, this gene was also implicated as being essential for the survival of this organism. The crystal structure of recombinant UbiX determined to 1.5 Å resolution showed that the protein belongs to the superfamily of homo-oligomeric flavine-containing cysteine decarboxylases. The enzyme assembles into a dodecamer with 23 point symmetry. The subunit displays a typical Rossmann fold and contains one FMN molecule bound at the interface between two subunits.
© 2011 International Union of Crystallography. All rights reserved.

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Year:  2011        PMID: 22102023      PMCID: PMC3212358          DOI: 10.1107/S174430911102923X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  21 in total

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Journal:  J Biol Chem       Date:  2001-03-02       Impact factor: 5.157

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Journal:  Protein Expr Purif       Date:  2007-11-22       Impact factor: 1.650

3.  Tracking flavin conformations in protein crystal structures with Raman spectroscopy and QM/MM calculations.

Authors:  Asmund Kjendseth Røhr; Hans-Petter Hersleth; K Kristoffer Andersson
Journal:  Angew Chem Int Ed Engl       Date:  2010-03-22       Impact factor: 15.336

4.  Crystal structure of the plant PPC decarboxylase AtHAL3a complexed with an ene-thiol reaction intermediate.

Authors:  Stefan Steinbacher; Pilar Hernández-Acosta; Bastian Bieseler; Michael Blaesse; Robert Huber; Francisco Antonio Culiáñez-Macià; Thomas Kupke
Journal:  J Mol Biol       Date:  2003-03-14       Impact factor: 5.469

5.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

6.  Unusual space-group pseudosymmetry in crystals of human phosphopantothenoylcysteine decarboxylase.

Authors:  Narayanan Manoj; Steven E Ealick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-09-19

7.  Crystal structure of a dodecameric FMN-dependent UbiX-like decarboxylase (Pad1) from Escherichia coli O157: H7.

Authors:  Erumbi S Rangarajan; Yunge Li; Pietro Iannuzzi; Ante Tocilj; Li-Wei Hung; Allan Matte; Miroslaw Cygler
Journal:  Protein Sci       Date:  2004-09-30       Impact factor: 6.725

8.  The role of UbiX in Escherichia coli coenzyme Q biosynthesis.

Authors:  Melissa Gulmezian; Kyle R Hyman; Beth N Marbois; Catherine F Clarke; George T Javor
Journal:  Arch Biochem Biophys       Date:  2007-08-23       Impact factor: 4.013

9.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  12 in total

1.  Identification of Coq11, a new coenzyme Q biosynthetic protein in the CoQ-synthome in Saccharomyces cerevisiae.

Authors:  Christopher M Allan; Agape M Awad; Jarrett S Johnson; Dyna I Shirasaki; Charles Wang; Crysten E Blaby-Haas; Sabeeha S Merchant; Joseph A Loo; Catherine F Clarke
Journal:  J Biol Chem       Date:  2015-01-28       Impact factor: 5.157

2.  Purification, crystallization and preliminary X-ray crystallographic studies of FMN-bound and FMN-free forms of aromatic acid decarboxylase (CpsUbiX) from the psychrophilic bacterium Colwellia psychrerythraea 34H.

Authors:  Hackwon Do; Chang Woo Lee; Se Jong Han; Sung Gu Lee; Hak Jun Kim; Hyun Park; Jun Hyuck Lee
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-01-21       Impact factor: 1.056

3.  Structure and Mechanism of Ferulic Acid Decarboxylase (FDC1) from Saccharomyces cerevisiae.

Authors:  Mohammad Wadud Bhuiya; Soon Goo Lee; Joseph M Jez; Oliver Yu
Journal:  Appl Environ Microbiol       Date:  2015-04-10       Impact factor: 4.792

4.  The In Vitro Production of prFMN for Reconstitution of UbiD Enzymes.

Authors:  Stephen A Marshall; Karl Fisher; David Leys
Journal:  Methods Mol Biol       Date:  2021

5.  Structure of dihydromethanopterin reductase, a cubic protein cage for redox transfer.

Authors:  Dan E McNamara; Duilio Cascio; Julien Jorda; Cheene Bustos; Tzu-Chi Wang; Madeline E Rasche; Todd O Yeates; Thomas A Bobik
Journal:  J Biol Chem       Date:  2014-02-12       Impact factor: 5.157

6.  COQ11 deletion mitigates respiratory deficiency caused by mutations in the gene encoding the coenzyme Q chaperone protein Coq10.

Authors:  Michelle C Bradley; Krista Yang; Lucía Fernández-Del-Río; Jennifer Ngo; Anita Ayer; Hui S Tsui; Noelle Alexa Novales; Roland Stocker; Orian S Shirihai; Mario H Barros; Catherine F Clarke
Journal:  J Biol Chem       Date:  2020-03-23       Impact factor: 5.157

7.  The AEROPATH project targeting Pseudomonas aeruginosa: crystallographic studies for assessment of potential targets in early-stage drug discovery.

Authors:  Lucille Moynie; Robert Schnell; Stephen A McMahon; Tatyana Sandalova; Wassila Abdelli Boulkerou; Jason W Schmidberger; Magnus Alphey; Cyprian Cukier; Fraser Duthie; Jolanta Kopec; Huanting Liu; Agata Jacewicz; William N Hunter; James H Naismith; Gunter Schneider
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-12-25

8.  Crystal structure of UbiX, an aromatic acid decarboxylase from the psychrophilic bacterium Colwellia psychrerythraea that undergoes FMN-induced conformational changes.

Authors:  Hackwon Do; Soo Jin Kim; Chang Woo Lee; Han-Woo Kim; Hyun Ho Park; Ho Min Kim; Hyun Park; HaJeung Park; Jun Hyuck Lee
Journal:  Sci Rep       Date:  2015-02-03       Impact factor: 4.379

9.  Structural insights into the UbiD protein family from the crystal structure of PA0254 from Pseudomonas aeruginosa.

Authors:  Agata Jacewicz; Atsushi Izumi; Katharina Brunner; Robert Schnell; Gunter Schneider
Journal:  PLoS One       Date:  2013-05-09       Impact factor: 3.240

10.  New cofactor supports α,β-unsaturated acid decarboxylation via 1,3-dipolar cycloaddition.

Authors:  Karl A P Payne; Mark D White; Karl Fisher; Basile Khara; Samuel S Bailey; David Parker; Nicholas J W Rattray; Drupad K Trivedi; Royston Goodacre; Rebecca Beveridge; Perdita Barran; Stephen E J Rigby; Nigel S Scrutton; Sam Hay; David Leys
Journal:  Nature       Date:  2015-06-17       Impact factor: 49.962

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