Literature DB >> 22101889

The ESFRI Instruct Core Centre Frankfurt: automated high-throughput crystallization suited for membrane proteins and more.

Yvonne Thielmann1, Juergen Koepke, Hartmut Michel.   

Abstract

Structure determination of membrane proteins and membrane protein complexes is still a very challenging field. To facilitate the work on membrane proteins the Core Centre follows a strategy that comprises four labs of protein analytics and crystal handling, covering mass spectrometry, calorimetry, crystallization and X-ray diffraction. This general workflow is presented and a capacity of 20% of the operating time of all systems is provided to the European structural biology community within the ESFRI Instruct program. A description of the crystallization service offered at the Core Centre is given with detailed information on screening strategy, screens used and changes to adapt high throughput for membrane proteins. Our aim is to constantly develop the Core Centre towards the usage of more efficient methods. This strategy might also include the ability to automate all steps from crystallization trials to crystal screening; here we look ahead how this aim might be realized at the Core Centre.

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Year:  2011        PMID: 22101889     DOI: 10.1007/s10969-011-9118-y

Source DB:  PubMed          Journal:  J Struct Funct Genomics        ISSN: 1345-711X


  12 in total

1.  The progress of membrane protein structure determination.

Authors:  Stephen H White
Journal:  Protein Sci       Date:  2004-07       Impact factor: 6.725

2.  Structure of the protein subunits in the photosynthetic reaction centre of Rhodopseudomonas viridis at 3Å resolution.

Authors:  J Deisenhofer; O Epp; K Miki; R Huber; H Michel
Journal:  Nature       Date:  1985 Dec 19-1986 Jan 1       Impact factor: 49.962

3.  High-pressure cooling of protein crystals without cryoprotectants.

Authors:  Chae Un Kim; Raphael Kapfer; Sol M Gruner
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-06-24

Review 4.  How many drug targets are there?

Authors:  John P Overington; Bissan Al-Lazikani; Andrew L Hopkins
Journal:  Nat Rev Drug Discov       Date:  2006-12       Impact factor: 84.694

5.  Microscopic rotary mechanism of ion translocation in the F(o) complex of ATP synthases.

Authors:  Denys Pogoryelov; Alexander Krah; Julian D Langer; Özkan Yildiz; José D Faraldo-Gómez; Thomas Meier
Journal:  Nat Chem Biol       Date:  2010-10-24       Impact factor: 15.040

Review 6.  Isothermal titration calorimetry: experimental design, data analysis, and probing macromolecule/ligand binding and kinetic interactions.

Authors:  Matthew W Freyer; Edwin A Lewis
Journal:  Methods Cell Biol       Date:  2008       Impact factor: 1.441

7.  The use of differential scanning fluorimetry to detect ligand interactions that promote protein stability.

Authors:  Frank H Niesen; Helena Berglund; Masoud Vedadi
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

8.  First experiences with semi-autonomous robotic harvesting of protein crystals.

Authors:  Robert Viola; Jace Walsh; Alex Melka; Wesley Womack; Sean Murphy; Alan Riboldi-Tunnicliffe; Bernhard Rupp
Journal:  J Struct Funct Genomics       Date:  2011-03-23

9.  One plate, two plates, a thousand plates. How crystallisation changes with large numbers of samples.

Authors:  Janet Newman
Journal:  Methods       Date:  2011-05-06       Impact factor: 3.608

10.  The structure of cbb3 cytochrome oxidase provides insights into proton pumping.

Authors:  Sabine Buschmann; Eberhard Warkentin; Hao Xie; Julian D Langer; Ulrich Ermler; Hartmut Michel
Journal:  Science       Date:  2010-06-24       Impact factor: 47.728

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  5 in total

1.  Structural genomics studies of human caries pathogen Streptococcus mutans.

Authors:  Lanfen Li; Jie Nan; Dan Li; Erik Brostromer; Zixi Wang; Cong Liu; Qiaoming Hou; Xuexin Fan; Zhaoyang Ye; Xiao-Dong Su
Journal:  J Struct Funct Genomics       Date:  2014-01-29

2.  The structure of the Aquifex aeolicus MATE family multidrug resistance transporter and sequence comparisons suggest the existence of a new subfamily.

Authors:  Jiangfeng Zhao; Hao Xie; Ahmad Reza Mehdipour; Schara Safarian; Ulrich Ermler; Cornelia Münke; Yvonne Thielmann; Gerhard Hummer; Ingo Ebersberger; Jingkang Wang; Hartmut Michel
Journal:  Proc Natl Acad Sci U S A       Date:  2021-11-16       Impact factor: 11.205

3.  Pseudomonas stutzeri as an alternative host for membrane proteins.

Authors:  Manuel Sommer; Hao Xie; Hartmut Michel
Journal:  Microb Cell Fact       Date:  2017-09-20       Impact factor: 5.328

4.  Classification of crystallization outcomes using deep convolutional neural networks.

Authors:  Andrew E Bruno; Patrick Charbonneau; Janet Newman; Edward H Snell; David R So; Vincent Vanhoucke; Christopher J Watkins; Shawn Williams; Julie Wilson
Journal:  PLoS One       Date:  2018-06-20       Impact factor: 3.240

5.  A standardized technique for high-pressure cooling of protein crystals.

Authors:  David Quirnheim Pais; Barbara Rathmann; Juergen Koepke; Cveta Tomova; Paul Wurzinger; Yvonne Thielmann
Journal:  Acta Crystallogr D Struct Biol       Date:  2017-11-22       Impact factor: 7.652

  5 in total

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