Literature DB >> 22100450

UHRF1 double tudor domain and the adjacent PHD finger act together to recognize K9me3-containing histone H3 tail.

Si Xie1, Jean Jakoncic, Chengmin Qian.   

Abstract

Human multi-domain-containing protein UHRF1 has recently been extensively characterized as a key epigenetic regulator for maintaining DNA methylation patterns. UHRF1 SRA domain preferentially binds to hemimethylated CpG sites, and double Tudor domain has been implicated in recognizing H3K9me3 mark, but the role of the adjacent PHD finger remains unclear. Here, we report the high-resolution crystal structure of UHRF1 PHD finger in complex with N-terminal tail of histone H3. We found that the preceding zinc-Cys4 knuckle is indispensable for the PHD finger of UHRF1 to recognize the first four unmodified residues of histone H3 N-terminal tail. Quantitative binding studies indicated that UHRF1 PHD finger (including the preceding zinc-Cys4 knuckle) acts together with the adjacent double Tudor domain to specifically recognize the H3K9me3 mark. Combinatorial recognition of H3K9me3-containing histone H3 tail by UHRF1 PHD finger and double Tudor domain may play a role in establishing and maintaining histone H3K9 methylation patterns during the cell cycle.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 22100450     DOI: 10.1016/j.jmb.2011.11.012

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  49 in total

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Journal:  J Biol Chem       Date:  2014-12-01       Impact factor: 5.157

2.  Kinetics and mechanisms of mitotic inheritance of DNA methylation and their roles in aging-associated methylome deterioration.

Authors:  Xuan Ming; Zhuqiang Zhang; Zhuoning Zou; Cong Lv; Qiang Dong; Qixiang He; Yangyang Yi; Yingfeng Li; Hailin Wang; Bing Zhu
Journal:  Cell Res       Date:  2020-06-24       Impact factor: 25.617

3.  DNA hypomethylation induces a DNA replication-associated cell cycle arrest to block hepatic outgrowth in uhrf1 mutant zebrafish embryos.

Authors:  Vinitha Jacob; Yelena Chernyavskaya; Xintong Chen; Poh Seng Tan; Brandon Kent; Yujin Hoshida; Kirsten C Sadler
Journal:  Development       Date:  2015-01-06       Impact factor: 6.868

4.  Recognition of modification status on a histone H3 tail by linked histone reader modules of the epigenetic regulator UHRF1.

Authors:  Kyohei Arita; Shin Isogai; Takashi Oda; Motoko Unoki; Kazuya Sugita; Naotaka Sekiyama; Keiko Kuwata; Ryuji Hamamoto; Hidehito Tochio; Mamoru Sato; Mariko Ariyoshi; Masahiro Shirakawa
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-25       Impact factor: 11.205

5.  An Allosteric Interaction Links USP7 to Deubiquitination and Chromatin Targeting of UHRF1.

Authors:  Zhi-Min Zhang; Scott B Rothbart; David F Allison; Qian Cai; Joseph S Harrison; Lin Li; Yinsheng Wang; Brian D Strahl; Gang Greg Wang; Jikui Song
Journal:  Cell Rep       Date:  2015-08-20       Impact factor: 9.423

6.  Multidimensional Proteomics Reveals a Role of UHRF2 in the Regulation of Epithelial-Mesenchymal Transition (EMT).

Authors:  Mi Lai; Lizhu Liang; Jiwei Chen; Naiqi Qiu; Sai Ge; Shuhui Ji; Tieliu Shi; Bei Zhen; Mingwei Liu; Chen Ding; Yi Wang; Jun Qin
Journal:  Mol Cell Proteomics       Date:  2016-04-25       Impact factor: 5.911

Review 7.  A Structural Perspective on Readout of Epigenetic Histone and DNA Methylation Marks.

Authors:  Dinshaw J Patel
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-03-01       Impact factor: 10.005

8.  Uhrf1 controls the self-renewal versus differentiation of hematopoietic stem cells by epigenetically regulating the cell-division modes.

Authors:  Jingyao Zhao; Xufeng Chen; Guangrong Song; Jiali Zhang; Haifeng Liu; Xiaolong Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-12       Impact factor: 11.205

9.  An Intramolecular Interaction of UHRF1 Reveals Dual Control for Its Histone Association.

Authors:  Linfeng Gao; Xiao-Feng Tan; Shen Zhang; Tianchen Wu; Zhi-Min Zhang; Hui-Wang Ai; Jikui Song
Journal:  Structure       Date:  2018-01-25       Impact factor: 5.006

10.  The UHRF1 protein stimulates the activity and specificity of the maintenance DNA methyltransferase DNMT1 by an allosteric mechanism.

Authors:  Pavel Bashtrykov; Gytis Jankevicius; Renata Z Jurkowska; Sergey Ragozin; Albert Jeltsch
Journal:  J Biol Chem       Date:  2013-12-24       Impact factor: 5.157

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