Literature DB >> 22091200

Eucomic acid methanol monosolvate.

Guo-Qiang Li, Yao-Lan Li, Guo-Cai Wang, Zhi-Hong Liang, Ren-Wang Jiang.   

Abstract

IN THE CRYSTAL STRUCTURE OF THE TITLE COMPOUND [SYSTEMATIC NAME: 2-hy-droxy-2-(4-hy-droxy-benz-yl)butane-dioic acid methanol monosolvate], C(11)H(12)O(6)·CH(3)OH, the dihedral angles between the planes of the carboxyl groups and the benzene ring are 51.23 (9) and 87.97 (9)°. Inter-molecular O-H⋯O hydrogen-bonding inter-actions involving the hy-droxy and carb-oxy-lic acid groups and the methanol solvent mol-ecule give a three-dimensional structure.

Entities:  

Year:  2011        PMID: 22091200      PMCID: PMC3213623          DOI: 10.1107/S1600536811030017

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to natural existance and related structures, see: Jiang et al. (2006 ▶); Li et al. (2008 ▶). For the absolute configuration of eucomic acid, see: Heller & Tamm (1974 ▶).

Experimental

Crystal data

C11H12O6·CH4O M = 272.25 Orthorhombic, a = 5.8970 (2) Å b = 7.2088 (3) Å c = 31.3290 (4) Å V = 1331.81 (7) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 293 K 0.60 × 0.20 × 0.10 mm

Data collection

Bruker SMART 1000 CCD diffractometer 7417 measured reflections 1408 independent reflections 1184 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.081 S = 1.05 1408 reflections 178 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.19 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SMART and SAINT (Bruker, 1998 ▶); data reduction: XPREP in SHELXTL (Sheldrick, 2008 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811030017/zs2127sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811030017/zs2127Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811030017/zs2127Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H12O6·CH4ODx = 1.358 Mg m3
Mr = 272.25Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, P212121Cell parameters from 2341 reflections
a = 5.8970 (2) Åθ = 1.3–25.0°
b = 7.2088 (3) ŵ = 0.11 mm1
c = 31.3290 (4) ÅT = 293 K
V = 1331.81 (7) Å3Prism, colourless
Z = 40.60 × 0.20 × 0.10 mm
F(000) = 576
Bruker SMART 1000 CCD diffractometer1184 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.036
graphiteθmax = 25.0°, θmin = 1.3°
ω scansh = −7→6
7417 measured reflectionsk = −8→6
1408 independent reflectionsl = −36→37
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.081H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0459P)2 + 0.0811P] where P = (Fo2 + 2Fc2)/3
1408 reflections(Δ/σ)max < 0.001
178 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O40.5195 (3)0.2588 (3)0.38870 (6)0.0496 (5)
H40.63580.30810.37990.074*
O2−0.0623 (2)0.3712 (2)0.37354 (5)0.0399 (4)
H2−0.01750.44780.35610.060*
O10.2583 (3)0.1398 (3)0.18267 (5)0.0503 (5)
H10.38110.09620.17560.075*
O30.3496 (3)0.4842 (3)0.35125 (5)0.0465 (5)
C5−0.0136 (4)0.1541 (3)0.28608 (7)0.0390 (6)
H5−0.15360.18850.29720.047*
C40.1514 (4)0.0859 (3)0.31338 (7)0.0346 (5)
C10.2305 (4)0.1201 (3)0.22599 (7)0.0373 (5)
C80.1204 (4)0.2530 (3)0.38545 (7)0.0337 (5)
C30.3574 (4)0.0333 (3)0.29570 (7)0.0401 (6)
H30.4705−0.01390.31330.048*
O6−0.0015 (5)0.3883 (3)0.49413 (6)0.0750 (6)
H60.01240.48730.50680.112*
C60.0240 (4)0.1722 (3)0.24286 (7)0.0380 (6)
H6A−0.08890.21930.22520.046*
O50.2358 (4)0.5185 (3)0.44936 (6)0.0769 (7)
C110.3419 (4)0.3486 (4)0.37382 (7)0.0361 (5)
C20.3976 (4)0.0497 (4)0.25230 (7)0.0420 (6)
H2A0.53650.01360.24090.050*
C70.1074 (4)0.0688 (3)0.36073 (7)0.0397 (6)
H7A0.2170−0.01670.37280.048*
H7B−0.04210.01560.36490.048*
C100.1187 (4)0.3916 (4)0.45945 (7)0.0449 (6)
C90.0974 (4)0.2185 (4)0.43323 (7)0.0412 (6)
H9A−0.04910.16220.43880.049*
H9B0.21340.13110.44210.049*
O70.0058 (6)0.6834 (4)0.54040 (10)0.1137 (10)
H7−0.07610.77300.53570.171*
C120.1744 (7)0.7337 (6)0.56770 (13)0.1048 (14)
H12A0.31670.68740.55730.157*
H12B0.14460.68280.59540.157*
H12C0.18080.86660.56960.157*
U11U22U33U12U13U23
O40.0228 (8)0.0617 (12)0.0644 (12)−0.0021 (9)−0.0012 (8)0.0092 (9)
O20.0262 (8)0.0491 (10)0.0446 (9)−0.0002 (8)0.0008 (7)0.0065 (8)
O10.0462 (10)0.0669 (13)0.0378 (9)0.0088 (10)0.0061 (8)−0.0085 (9)
O30.0389 (10)0.0530 (11)0.0474 (10)−0.0084 (9)0.0064 (8)0.0099 (9)
C50.0297 (12)0.0451 (14)0.0421 (13)0.0043 (12)0.0037 (10)−0.0067 (11)
C40.0293 (11)0.0371 (12)0.0374 (12)−0.0031 (11)−0.0008 (10)−0.0057 (10)
C10.0362 (12)0.0398 (13)0.0360 (12)−0.0020 (11)0.0037 (10)−0.0075 (11)
C80.0232 (11)0.0434 (13)0.0345 (12)0.0004 (11)−0.0002 (9)0.0034 (10)
C30.0312 (13)0.0442 (14)0.0449 (13)0.0002 (12)−0.0058 (11)−0.0028 (11)
O60.0911 (16)0.0758 (14)0.0580 (12)−0.0167 (15)0.0377 (12)−0.0163 (10)
C60.0336 (13)0.0430 (13)0.0375 (13)0.0072 (12)−0.0018 (10)−0.0022 (10)
O50.0892 (16)0.0762 (15)0.0653 (12)−0.0429 (13)0.0272 (12)−0.0222 (11)
C110.0272 (12)0.0485 (15)0.0325 (12)−0.0041 (12)0.0018 (10)−0.0049 (12)
C20.0287 (12)0.0488 (14)0.0485 (14)0.0006 (12)0.0033 (11)−0.0114 (12)
C70.0344 (13)0.0416 (13)0.0430 (13)−0.0068 (12)0.0000 (10)0.0015 (11)
C100.0399 (14)0.0588 (16)0.0361 (13)−0.0049 (14)0.0047 (11)0.0011 (12)
C90.0361 (13)0.0501 (14)0.0373 (13)−0.0072 (12)0.0027 (10)0.0033 (11)
O70.134 (2)0.0946 (19)0.112 (2)0.0550 (19)−0.042 (2)−0.0518 (17)
C120.101 (3)0.096 (3)0.118 (3)0.032 (3)−0.028 (3)−0.024 (3)
O4—H40.8200C3—H30.9300
O4—C111.317 (3)C3—C21.385 (3)
O2—H20.8200O6—H60.8200
O2—C81.424 (3)O6—C101.298 (3)
O1—H10.8200C6—H6A0.9300
O1—C11.374 (3)O5—C101.189 (3)
O3—C111.207 (3)C2—H2A0.9300
C5—H50.9300C7—H7A0.9700
C5—C41.386 (3)C7—H7B0.9700
C5—C61.378 (3)C10—C91.499 (4)
C4—C31.388 (3)C9—H9A0.9700
C4—C71.511 (3)C9—H9B0.9700
C1—C61.380 (3)O7—H70.8200
C1—C21.381 (3)O7—C121.361 (4)
C8—C111.521 (3)C12—H12A0.9600
C8—C71.539 (3)C12—H12B0.9600
C8—C91.523 (3)C12—H12C0.9600
C11—O4—H4109.5O3—C11—C8122.6 (2)
C8—O2—H2109.5C1—C2—C3119.7 (2)
C1—O1—H1109.5C1—C2—H2A120.2
C4—C5—H5119.1C3—C2—H2A120.2
C6—C5—H5119.1C4—C7—C8114.53 (19)
C6—C5—C4121.8 (2)C4—C7—H7A108.6
C5—C4—C3117.7 (2)C4—C7—H7B108.6
C5—C4—C7120.9 (2)C8—C7—H7A108.6
C3—C4—C7121.3 (2)C8—C7—H7B108.6
O1—C1—C6117.1 (2)H7A—C7—H7B107.6
O1—C1—C2122.8 (2)O6—C10—C9113.4 (2)
C6—C1—C2120.1 (2)O5—C10—O6123.6 (2)
O2—C8—C11108.42 (17)O5—C10—C9122.9 (2)
O2—C8—C7110.29 (18)C8—C9—H9A108.9
O2—C8—C9106.74 (18)C8—C9—H9B108.9
C11—C8—C7108.24 (18)C10—C9—C8113.2 (2)
C11—C8—C9112.71 (18)C10—C9—H9A108.9
C9—C8—C7110.41 (19)C10—C9—H9B108.9
C4—C3—H3119.4H9A—C9—H9B107.7
C2—C3—C4121.2 (2)C12—O7—H7109.5
C2—C3—H3119.4O7—C12—H12A109.5
C10—O6—H6109.5O7—C12—H12B109.5
C5—C6—C1119.5 (2)O7—C12—H12C109.5
C5—C6—H6A120.2H12A—C12—H12B109.5
C1—C6—H6A120.2H12A—C12—H12C109.5
O4—C11—C8112.08 (19)H12B—C12—H12C109.5
O3—C11—O4125.1 (2)
O2—C8—C11—O4171.94 (19)C6—C5—C4—C7179.4 (2)
O2—C8—C11—O3−12.4 (3)C6—C1—C2—C3−0.5 (4)
O2—C8—C7—C468.0 (2)O5—C10—C9—C8−32.1 (4)
O2—C8—C9—C10−62.6 (2)C11—C8—C7—C4−50.5 (3)
O1—C1—C6—C5179.5 (2)C11—C8—C9—C1056.3 (3)
O1—C1—C2—C3−179.8 (2)C2—C1—C6—C50.2 (4)
C5—C4—C3—C20.6 (3)C7—C4—C3—C2−179.7 (2)
C5—C4—C7—C8−77.1 (3)C7—C8—C11—O4−68.4 (2)
C4—C5—C6—C10.5 (4)C7—C8—C11—O3107.2 (2)
C4—C3—C2—C10.1 (4)C7—C8—C9—C10177.5 (2)
C3—C4—C7—C8103.2 (3)C9—C8—C11—O454.0 (3)
O6—C10—C9—C8148.3 (2)C9—C8—C11—O3−130.3 (2)
C6—C5—C4—C3−0.9 (3)C9—C8—C7—C4−174.29 (19)
D—H···AD—HH···AD···AD—H···A
O1—H1···O3i0.821.972.781 (3)170
O2—H2···O30.822.192.655 (2)116
O2—H2···O1ii0.822.332.861 (2)123
O4—H4···O2iii0.821.852.639 (2)162
O6—H6···O70.821.762.575 (4)170
O7—H7···O5iv0.821.932.694 (4)156
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O3i0.821.972.781 (3)170
O2—H2⋯O1ii0.822.332.861 (2)123
O4—H4⋯O2iii0.821.852.639 (2)162
O6—H6⋯O70.821.762.575 (4)170
O7—H7⋯O5iv0.821.932.694 (4)156

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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