Literature DB >> 21202973

Methyl eucomate.

Linglin Li, Guang-Xiong Zhou, Ren-Wang Jiang.   

Abstract

THE CRYSTAL STRUCTURE OF THE TITLE COMPOUND [SYSTEMATIC NAME: methyl 3-carboxy-3-hydr-oxy-3-(4-hydroxy-benz-yl)propanoate], C(12)H(14)O(6), is stabilized by inter-molecular O-H⋯O and C-H⋯O hydrogen bonds. The mol-ecules are arranged in layers, parallel to (001), which are inter-connected by the O-H⋯O hydrogen bonds.

Entities:  

Year:  2008        PMID: 21202973      PMCID: PMC2961689          DOI: 10.1107/S1600536808018734

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Heller & Tamm (1974 ▶); Jiang et al. (2002 ▶, 2006 ▶).

Experimental

Crystal data

C12H14O6 M = 254.23 Orthorhombic, a = 5.9109 (6) Å b = 7.0348 (7) Å c = 29.109 (3) Å V = 1210.4 (2) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 293 (2) K 0.40 × 0.32 × 0.25 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: none 6709 measured reflections 1279 independent reflections 1047 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.066 S = 1.05 1278 reflections 168 parameters H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.12 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT and XPREP in SHELXTL (Sheldrick, 2008 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP (Siemens, 1998 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808018734/fb2096sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808018734/fb2096Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H14O6F000 = 536
Mr = 254.23Dx = 1.395 Mg m3
Orthorhombic, P212121Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 6709 reflections
a = 5.9109 (6) Åθ = 1.4–25.0º
b = 7.0348 (7) ŵ = 0.11 mm1
c = 29.109 (3) ÅT = 293 (2) K
V = 1210.4 (2) Å3Rectangular, colourless
Z = 40.40 × 0.32 × 0.25 mm
Bruker SMART/CCD diffractometer1047 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.046
Monochromator: graphiteθmax = 25.0º
T = 293(2) Kθmin = 1.4º
ω scansh = −6→7
Absorption correction: nonek = −8→7
6709 measured reflectionsl = −27→34
1279 independent reflections
Refinement on F2Hydrogen site location: difference Fourier map
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.029  w = 1/[σ2(Fo2) + (0.0328P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.066(Δ/σ)max < 0.001
S = 1.05Δρmax = 0.14 e Å3
1278 reflectionsΔρmin = −0.12 e Å3
168 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
42 constraintsExtinction coefficient: 0.0070 (19)
Primary atom site location: structure-invariant direct methodsAbsolute structure:
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.2505 (3)0.2830 (2)0.32392 (5)0.0466 (5)
H10.13130.23460.33230.070*
O20.5510 (2)0.5081 (2)0.11441 (5)0.0400 (4)
H20.50990.58650.13350.060*
O30.1405 (3)0.6278 (2)0.13901 (5)0.0425 (4)
O4−0.0301 (3)0.3948 (3)0.09911 (6)0.0499 (5)
H4−0.14600.45000.10700.075*
O50.2745 (4)0.6569 (3)0.03265 (6)0.0640 (6)
O60.3709 (3)0.4543 (2)−0.02286 (5)0.0543 (5)
C10.2722 (4)0.2631 (3)0.27718 (8)0.0344 (6)
C20.4773 (4)0.3133 (3)0.25799 (8)0.0367 (6)
H2B0.59320.35980.27640.044*
C30.5089 (4)0.2940 (3)0.21133 (8)0.0370 (6)
H3A0.64750.32860.19870.044*
C40.3420 (4)0.2253 (3)0.18265 (8)0.0346 (6)
C50.1367 (4)0.1752 (3)0.20275 (8)0.0389 (6)
H5A0.02090.12850.18430.047*
C60.1010 (4)0.1933 (3)0.24947 (9)0.0387 (6)
H6A−0.03730.15880.26220.046*
C70.3804 (4)0.2011 (3)0.13179 (8)0.0400 (6)
H7A0.26930.11190.12010.048*
H7B0.52860.14510.12720.048*
C80.3660 (4)0.3855 (3)0.10324 (7)0.0336 (5)
C90.3831 (4)0.3384 (3)0.05217 (8)0.0403 (6)
H9A0.53390.29040.04590.048*
H9B0.27670.23750.04520.048*
C100.3374 (4)0.5023 (4)0.02090 (8)0.0424 (6)
C110.1476 (4)0.4865 (4)0.11534 (7)0.0347 (5)
C120.3196 (5)0.5985 (4)−0.05667 (9)0.0681 (9)
H12A0.35520.5515−0.08680.102*
H12B0.40790.7102−0.05050.102*
H12C0.16170.6297−0.05520.102*
U11U22U33U12U13U23
O10.0418 (10)0.0604 (11)0.0377 (10)−0.0079 (10)0.0050 (8)0.0063 (9)
O20.0255 (9)0.0527 (11)0.0418 (11)−0.0021 (8)0.0013 (7)−0.0105 (9)
O30.0368 (9)0.0474 (10)0.0432 (10)0.0061 (9)0.0051 (8)−0.0103 (8)
O40.0229 (9)0.0617 (12)0.0651 (12)0.0047 (9)−0.0011 (9)−0.0157 (11)
O50.0819 (15)0.0646 (12)0.0454 (11)0.0208 (12)0.0057 (11)−0.0017 (10)
O60.0678 (12)0.0652 (11)0.0298 (9)−0.0045 (11)0.0042 (10)−0.0054 (9)
C10.0334 (13)0.0335 (13)0.0363 (14)0.0024 (11)0.0021 (11)0.0060 (11)
C20.0315 (12)0.0395 (14)0.0391 (15)−0.0086 (12)−0.0029 (11)0.0020 (12)
C30.0277 (12)0.0404 (13)0.0429 (15)−0.0040 (12)0.0035 (11)0.0041 (12)
C40.0294 (12)0.0326 (12)0.0417 (14)0.0046 (11)−0.0010 (11)0.0021 (11)
C50.0293 (12)0.0412 (13)0.0463 (15)−0.0009 (12)−0.0045 (12)0.0000 (12)
C60.0263 (12)0.0430 (13)0.0470 (15)−0.0029 (11)0.0030 (11)0.0068 (13)
C70.0336 (12)0.0431 (13)0.0431 (14)0.0062 (12)−0.0021 (12)−0.0074 (12)
C80.0223 (11)0.0441 (14)0.0344 (13)0.0009 (12)−0.0012 (11)−0.0054 (12)
C90.0334 (13)0.0521 (14)0.0356 (14)0.0060 (12)0.0028 (11)−0.0071 (12)
C100.0315 (13)0.0572 (16)0.0385 (14)−0.0011 (15)0.0029 (12)−0.0075 (14)
C110.0277 (12)0.0460 (14)0.0303 (12)0.0012 (13)−0.0001 (11)0.0007 (12)
C120.085 (2)0.080 (2)0.0393 (15)−0.023 (2)−0.0078 (16)0.0111 (16)
O1—C11.374 (3)C4—C51.392 (3)
O1—H10.8200C4—C71.507 (3)
O2—C81.430 (3)C5—C61.382 (3)
O2—H20.8200C5—H5A0.9300
O3—C111.210 (3)C6—H6A0.9300
O4—C111.320 (3)C7—C81.543 (3)
O4—H40.8200C7—H7A0.9700
O5—C101.200 (3)C7—H7B0.9700
O6—C101.333 (3)C8—C111.515 (3)
O6—C121.446 (3)C8—C91.526 (3)
C1—C21.380 (3)C9—C101.494 (3)
C1—C61.384 (3)C9—H9A0.9700
C2—C31.378 (3)C9—H9B0.9700
C2—H2B0.9300C12—H12A0.9600
C3—C41.380 (3)C12—H12B0.9600
C3—H3A0.9300C12—H12C0.9600
C1—O1—H1109.5C8—C7—H7B108.5
C8—O2—H2109.5H7A—C7—H7B107.5
C11—O4—H4109.5O2—C8—C11108.40 (17)
C10—O6—C12116.2 (2)O2—C8—C9107.55 (19)
O1—C1—C2117.2 (2)C11—C8—C9112.63 (19)
O1—C1—C6123.0 (2)O2—C8—C7110.03 (18)
C2—C1—C6119.8 (2)C11—C8—C7108.44 (18)
C3—C2—C1119.5 (2)C9—C8—C7109.77 (19)
C3—C2—H2B120.2C10—C9—C8114.4 (2)
C1—C2—H2B120.2C10—C9—H9A108.6
C2—C3—C4122.3 (2)C8—C9—H9A108.6
C2—C3—H3A118.9C10—C9—H9B108.6
C4—C3—H3A118.9C8—C9—H9B108.6
C3—C4—C5117.2 (2)H9A—C9—H9B107.6
C3—C4—C7121.8 (2)O5—C10—O6123.3 (2)
C5—C4—C7121.0 (2)O5—C10—C9125.6 (2)
C6—C5—C4121.5 (2)O6—C10—C9111.1 (2)
C6—C5—H5A119.2O3—C11—O4125.3 (2)
C4—C5—H5A119.2O3—C11—C8123.2 (2)
C5—C6—C1119.6 (2)O4—C11—C8111.43 (19)
C5—C6—H6A120.2O6—C12—H12A109.5
C1—C6—H6A120.2O6—C12—H12B109.5
C4—C7—C8115.19 (19)H12A—C12—H12B109.5
C4—C7—H7A108.5O6—C12—H12C109.5
C8—C7—H7A108.5H12A—C12—H12C109.5
C4—C7—H7B108.5H12B—C12—H12C109.5
O1—C1—C2—C3179.3 (2)C4—C7—C8—C9−174.1 (2)
C6—C1—C2—C30.3 (4)O2—C8—C9—C10−68.8 (2)
C1—C2—C3—C4−0.2 (4)C11—C8—C9—C1050.5 (3)
C2—C3—C4—C50.1 (3)C7—C8—C9—C10171.5 (2)
C2—C3—C4—C7−178.7 (2)C12—O6—C10—O5−2.1 (4)
C3—C4—C5—C60.0 (3)C12—O6—C10—C9176.6 (2)
C7—C4—C5—C6178.7 (2)C8—C9—C10—O5−5.7 (4)
C4—C5—C6—C10.1 (4)C8—C9—C10—O6175.6 (2)
O1—C1—C6—C5−179.2 (2)O2—C8—C11—O3−13.9 (3)
C2—C1—C6—C5−0.2 (4)C9—C8—C11—O3−132.8 (2)
C3—C4—C7—C8−78.5 (3)C7—C8—C11—O3105.5 (2)
C5—C4—C7—C8102.8 (3)O2—C8—C11—O4169.74 (19)
C4—C7—C8—O267.7 (3)C9—C8—C11—O450.9 (3)
C4—C7—C8—C11−50.7 (3)C7—C8—C11—O4−70.8 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1···O3i0.821.962.775 (2)172
O2—H2···O1ii0.822.342.888 (2)125
O4—H4···O2iii0.821.852.639 (2)161
C12—H12B···O5iv0.962.423.268 (4)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O3i0.821.962.775 (2)172
O2—H2⋯O1ii0.822.332.888 (2)125
O4—H4⋯O2iii0.821.852.639 (2)161
C12—H12B⋯O5iv0.962.423.268 (4)148

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  Two novel C29-5beta-sterols from the stems of Opuntia dillenii.

Authors:  Jianqin Jiang; Yanfang Li; Zhen Chen; Zhida Min; Fengchang Lou
Journal:  Steroids       Date:  2006-11-16       Impact factor: 2.668

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total
  1 in total

1.  Eucomic acid methanol monosolvate.

Authors:  Guo-Qiang Li; Yao-Lan Li; Guo-Cai Wang; Zhi-Hong Liang; Ren-Wang Jiang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-30
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.