| Literature DB >> 22091161 |
Hoong-Kun Fun, Madhukar Hemamalini, Hatem A Abdel-Aziz, Tarek Aboul-Fadl.
Abstract
In the title compound, C(17)H(16)N(6)O(2)S, an intra-molecular N-H⋯O inter-action generates an S(6) ring. The pyridine ring makes a dihedral angle of 71.38 (11)° with the thio-phene ring. In the crystal, mol-ecules are linked by a pair of N-H⋯N hydrogen bonds, forming an inversion dimer. The dimers are stacked in columns along the b axis through weak inter-molecular C-H⋯N hydrogen bonds.Entities:
Year: 2011 PMID: 22091161 PMCID: PMC3213584 DOI: 10.1107/S1600536811028911
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C17H16N6O2S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 8773 reflections |
| θ = 2.7–28.9° | |
| µ = 0.21 mm−1 | |
| β = 90.332 (1)° | Block, yellow |
| 0.47 × 0.22 × 0.13 mm | |
| Bruker APEXII DUO CCD area-detector diffractometer | 4782 independent reflections |
| Radiation source: fine-focus sealed tube | 3518 reflections with |
| graphite | |
| φ and ω scans | θmax = 29.2°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 33610 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 4782 reflections | (Δ/σ)max = 0.001 |
| 238 parameters | Δρmax = 0.61 e Å−3 |
| 0 restraints | Δρmin = −0.68 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.3443 (3) | 0.6604 (2) | 0.08593 (9) | 0.0832 (7) | |
| O2 | 0.4554 (3) | 0.80464 (18) | 0.01904 (9) | 0.0674 (5) | |
| N1 | −0.0513 (2) | 0.07181 (16) | 0.08467 (9) | 0.0443 (4) | |
| N2 | 0.0682 (3) | 0.16420 (17) | −0.01066 (9) | 0.0527 (5) | |
| H1N2 | 0.0709 | 0.1009 | −0.0392 | 0.063* | |
| N3 | 0.1472 (3) | 0.27295 (17) | −0.02803 (9) | 0.0514 (5) | |
| N4 | 0.2184 (2) | 0.46227 (16) | 0.02614 (8) | 0.0447 (4) | |
| H1N4 | 0.2299 | 0.5014 | 0.0617 | 0.054* | |
| N5 | 0.2772 (2) | 0.51079 (17) | −0.02755 (8) | 0.0441 (4) | |
| N6 | 0.4563 (4) | 0.7030 (3) | −0.13610 (14) | 0.0921 (9) | |
| C1 | 0.0215 (3) | 0.16591 (18) | 0.05219 (9) | 0.0413 (4) | |
| C2 | −0.0843 (3) | 0.09562 (19) | 0.14668 (10) | 0.0418 (4) | |
| C3 | −0.0472 (2) | 0.21163 (18) | 0.17806 (10) | 0.0407 (4) | |
| C4 | 0.0297 (2) | 0.30706 (17) | 0.14358 (9) | 0.0370 (4) | |
| C5 | 0.0674 (2) | 0.28297 (17) | 0.07806 (9) | 0.0375 (4) | |
| C6 | 0.1458 (3) | 0.34311 (19) | 0.02462 (9) | 0.0419 (4) | |
| C7 | 0.3502 (3) | 0.6208 (2) | −0.02605 (10) | 0.0465 (5) | |
| C8 | 0.4084 (3) | 0.6659 (3) | −0.08754 (13) | 0.0588 (6) | |
| C9 | 0.3807 (3) | 0.6957 (2) | 0.03246 (12) | 0.0554 (6) | |
| C10 | 0.4980 (4) | 0.8842 (3) | 0.07369 (16) | 0.0752 (8) | |
| H10A | 0.5939 | 0.9350 | 0.0631 | 0.090* | |
| H10B | 0.5258 | 0.8326 | 0.1110 | 0.090* | |
| C11 | 0.3568 (6) | 0.9662 (4) | 0.0894 (2) | 0.1057 (13) | |
| H11A | 0.3878 | 1.0224 | 0.1238 | 0.158* | |
| H11B | 0.2646 | 0.9158 | 0.1029 | 0.158* | |
| H11C | 0.3261 | 1.0140 | 0.0516 | 0.158* | |
| C12 | 0.0656 (2) | 0.43206 (17) | 0.17233 (9) | 0.0385 (4) | |
| S1 | 0.21437 (12) | 0.45313 (7) | 0.23040 (5) | 0.0874 (4) | |
| C13 | −0.0232 (3) | 0.54559 (17) | 0.16053 (11) | 0.0471 (5) | |
| H13A | −0.1118 | 0.5552 | 0.1319 | 0.056* | |
| C14 | 0.0476 (3) | 0.6427 (2) | 0.20046 (14) | 0.0605 (7) | |
| H14A | 0.0110 | 0.7255 | 0.1989 | 0.073* | |
| C15 | 0.1673 (4) | 0.6062 (3) | 0.23924 (14) | 0.0674 (7) | |
| H15A | 0.2207 | 0.6591 | 0.2686 | 0.081* | |
| C16 | −0.1660 (4) | −0.0089 (2) | 0.18327 (13) | 0.0591 (6) | |
| H16A | −0.1719 | −0.0823 | 0.1563 | 0.089* | |
| H16B | −0.2759 | 0.0161 | 0.1954 | 0.089* | |
| H16C | −0.1024 | −0.0275 | 0.2217 | 0.089* | |
| C17 | −0.1005 (4) | 0.2290 (2) | 0.24741 (12) | 0.0590 (6) | |
| H17A | −0.0752 | 0.3130 | 0.2612 | 0.089* | |
| H17B | −0.0426 | 0.1702 | 0.2746 | 0.089* | |
| H17C | −0.2177 | 0.2149 | 0.2506 | 0.089* |
| O1 | 0.1284 (19) | 0.0709 (13) | 0.0503 (10) | −0.0409 (13) | 0.0105 (11) | −0.0096 (9) |
| O2 | 0.0854 (13) | 0.0548 (10) | 0.0619 (11) | −0.0234 (9) | −0.0050 (9) | 0.0013 (8) |
| N1 | 0.0605 (10) | 0.0309 (8) | 0.0415 (9) | −0.0040 (7) | −0.0020 (7) | −0.0093 (6) |
| N2 | 0.0854 (14) | 0.0356 (9) | 0.0372 (9) | −0.0096 (9) | 0.0032 (9) | −0.0098 (7) |
| N3 | 0.0774 (13) | 0.0385 (9) | 0.0384 (9) | −0.0054 (9) | 0.0012 (8) | −0.0044 (7) |
| N4 | 0.0599 (11) | 0.0372 (8) | 0.0371 (8) | −0.0072 (7) | 0.0009 (7) | −0.0031 (6) |
| N5 | 0.0515 (10) | 0.0407 (9) | 0.0401 (9) | −0.0024 (7) | −0.0033 (7) | 0.0010 (7) |
| N6 | 0.120 (2) | 0.094 (2) | 0.0626 (15) | −0.0126 (17) | 0.0142 (15) | 0.0220 (14) |
| C1 | 0.0559 (11) | 0.0300 (9) | 0.0381 (9) | −0.0006 (8) | −0.0031 (8) | −0.0071 (7) |
| C2 | 0.0488 (10) | 0.0325 (9) | 0.0441 (10) | −0.0020 (8) | 0.0013 (8) | −0.0064 (7) |
| C3 | 0.0467 (10) | 0.0355 (9) | 0.0400 (9) | 0.0001 (8) | 0.0033 (8) | −0.0090 (7) |
| C4 | 0.0420 (9) | 0.0296 (8) | 0.0394 (9) | 0.0022 (7) | −0.0028 (7) | −0.0094 (7) |
| C5 | 0.0460 (10) | 0.0285 (8) | 0.0379 (9) | 0.0012 (7) | −0.0033 (7) | −0.0060 (7) |
| C6 | 0.0539 (11) | 0.0341 (9) | 0.0375 (9) | −0.0010 (8) | −0.0024 (8) | −0.0036 (7) |
| C7 | 0.0519 (11) | 0.0434 (11) | 0.0443 (11) | −0.0040 (9) | −0.0033 (9) | 0.0029 (8) |
| C8 | 0.0656 (15) | 0.0572 (14) | 0.0536 (13) | −0.0080 (12) | −0.0014 (11) | 0.0084 (11) |
| C9 | 0.0665 (14) | 0.0486 (12) | 0.0512 (12) | −0.0124 (11) | 0.0006 (10) | −0.0013 (10) |
| C10 | 0.088 (2) | 0.0700 (18) | 0.0674 (17) | −0.0241 (16) | −0.0069 (15) | −0.0054 (14) |
| C11 | 0.123 (3) | 0.104 (3) | 0.090 (3) | 0.005 (3) | 0.022 (2) | −0.018 (2) |
| C12 | 0.0471 (10) | 0.0322 (9) | 0.0362 (9) | −0.0007 (7) | −0.0024 (7) | −0.0092 (7) |
| S1 | 0.1022 (6) | 0.0517 (4) | 0.1075 (7) | 0.0073 (4) | −0.0565 (5) | −0.0211 (4) |
| C13 | 0.0628 (13) | 0.0254 (8) | 0.0529 (12) | −0.0027 (8) | −0.0138 (10) | −0.0069 (8) |
| C14 | 0.0720 (16) | 0.0301 (10) | 0.0795 (17) | 0.0007 (10) | 0.0077 (13) | −0.0153 (10) |
| C15 | 0.0914 (19) | 0.0490 (13) | 0.0617 (15) | −0.0171 (13) | −0.0097 (14) | −0.0215 (11) |
| C16 | 0.0800 (16) | 0.0428 (11) | 0.0544 (13) | −0.0172 (11) | 0.0066 (12) | −0.0038 (10) |
| C17 | 0.0762 (16) | 0.0506 (13) | 0.0504 (12) | −0.0084 (12) | 0.0185 (11) | −0.0156 (10) |
| O1—C9 | 1.202 (3) | C7—C8 | 1.436 (3) |
| O2—C9 | 1.337 (3) | C7—C9 | 1.464 (3) |
| O2—C10 | 1.448 (3) | C10—C11 | 1.472 (5) |
| N1—C2 | 1.330 (3) | C10—H10A | 0.9700 |
| N1—C1 | 1.342 (3) | C10—H10B | 0.9700 |
| N2—C1 | 1.350 (3) | C11—H11A | 0.9600 |
| N2—N3 | 1.370 (3) | C11—H11B | 0.9600 |
| N2—H1N2 | 0.8953 | C11—H11C | 0.9600 |
| N3—C6 | 1.317 (3) | C12—C13 | 1.425 (3) |
| N4—N5 | 1.312 (2) | C12—S1 | 1.704 (2) |
| N4—C6 | 1.398 (3) | S1—C15 | 1.683 (3) |
| N4—H1N4 | 0.8475 | C13—C14 | 1.438 (3) |
| N5—C7 | 1.311 (3) | C13—H13A | 0.9300 |
| N6—C8 | 1.144 (3) | C14—C15 | 1.309 (4) |
| C1—C5 | 1.404 (2) | C14—H14A | 0.9300 |
| C2—C3 | 1.425 (3) | C15—H15A | 0.9300 |
| C2—C16 | 1.498 (3) | C16—H16A | 0.9600 |
| C3—C4 | 1.388 (3) | C16—H16B | 0.9600 |
| C3—C17 | 1.505 (3) | C16—H16C | 0.9600 |
| C4—C5 | 1.408 (3) | C17—H17A | 0.9600 |
| C4—C12 | 1.484 (2) | C17—H17B | 0.9600 |
| C5—C6 | 1.424 (3) | C17—H17C | 0.9600 |
| C9—O2—C10 | 116.9 (2) | O2—C10—H10A | 109.7 |
| C2—N1—C1 | 115.27 (17) | C11—C10—H10A | 109.7 |
| C1—N2—N3 | 111.82 (16) | O2—C10—H10B | 109.7 |
| C1—N2—H1N2 | 130.4 | C11—C10—H10B | 109.7 |
| N3—N2—H1N2 | 116.9 | H10A—C10—H10B | 108.2 |
| C6—N3—N2 | 104.96 (17) | C10—C11—H11A | 109.5 |
| N5—N4—C6 | 119.50 (17) | C10—C11—H11B | 109.5 |
| N5—N4—H1N4 | 119.8 | H11A—C11—H11B | 109.5 |
| C6—N4—H1N4 | 120.6 | C10—C11—H11C | 109.5 |
| C7—N5—N4 | 119.77 (18) | H11A—C11—H11C | 109.5 |
| N1—C1—N2 | 126.38 (17) | H11B—C11—H11C | 109.5 |
| N1—C1—C5 | 126.08 (18) | C13—C12—C4 | 126.55 (17) |
| N2—C1—C5 | 107.51 (18) | C13—C12—S1 | 111.06 (14) |
| N1—C2—C3 | 123.90 (19) | C4—C12—S1 | 122.20 (15) |
| N1—C2—C16 | 115.61 (18) | C15—S1—C12 | 92.58 (12) |
| C3—C2—C16 | 120.49 (19) | C12—C13—C14 | 108.4 (2) |
| C4—C3—C2 | 119.73 (18) | C12—C13—H13A | 125.8 |
| C4—C3—C17 | 121.76 (18) | C14—C13—H13A | 125.8 |
| C2—C3—C17 | 118.46 (19) | C15—C14—C13 | 115.1 (2) |
| C3—C4—C5 | 117.16 (16) | C15—C14—H14A | 122.5 |
| C3—C4—C12 | 122.62 (17) | C13—C14—H14A | 122.5 |
| C5—C4—C12 | 120.17 (17) | C14—C15—S1 | 112.84 (18) |
| C1—C5—C4 | 117.84 (18) | C14—C15—H15A | 123.6 |
| C1—C5—C6 | 102.90 (16) | S1—C15—H15A | 123.6 |
| C4—C5—C6 | 139.26 (18) | C2—C16—H16A | 109.5 |
| N3—C6—N4 | 121.85 (19) | C2—C16—H16B | 109.5 |
| N3—C6—C5 | 112.78 (18) | H16A—C16—H16B | 109.5 |
| N4—C6—C5 | 125.35 (17) | C2—C16—H16C | 109.5 |
| N5—C7—C8 | 115.3 (2) | H16A—C16—H16C | 109.5 |
| N5—C7—C9 | 125.4 (2) | H16B—C16—H16C | 109.5 |
| C8—C7—C9 | 119.3 (2) | C3—C17—H17A | 109.5 |
| N6—C8—C7 | 179.0 (3) | C3—C17—H17B | 109.5 |
| O1—C9—O2 | 125.0 (2) | H17A—C17—H17B | 109.5 |
| O1—C9—C7 | 122.8 (2) | C3—C17—H17C | 109.5 |
| O2—C9—C7 | 112.1 (2) | H17A—C17—H17C | 109.5 |
| O2—C10—C11 | 109.7 (3) | H17B—C17—H17C | 109.5 |
| C1—N2—N3—C6 | −1.2 (3) | N5—N4—C6—N3 | 6.0 (3) |
| C6—N4—N5—C7 | −177.88 (19) | N5—N4—C6—C5 | −175.59 (19) |
| C2—N1—C1—N2 | 179.4 (2) | C1—C5—C6—N3 | 0.5 (2) |
| C2—N1—C1—C5 | 1.5 (3) | C4—C5—C6—N3 | 179.5 (2) |
| N3—N2—C1—N1 | −176.7 (2) | C1—C5—C6—N4 | −178.0 (2) |
| N3—N2—C1—C5 | 1.6 (3) | C4—C5—C6—N4 | 1.0 (4) |
| C1—N1—C2—C3 | 0.1 (3) | N4—N5—C7—C8 | −179.3 (2) |
| C1—N1—C2—C16 | 179.9 (2) | N4—N5—C7—C9 | 3.1 (4) |
| N1—C2—C3—C4 | −0.8 (3) | C10—O2—C9—O1 | 1.3 (4) |
| C16—C2—C3—C4 | 179.4 (2) | C10—O2—C9—C7 | −177.5 (2) |
| N1—C2—C3—C17 | 176.4 (2) | N5—C7—C9—O1 | 2.0 (4) |
| C16—C2—C3—C17 | −3.4 (3) | C8—C7—C9—O1 | −175.5 (3) |
| C2—C3—C4—C5 | 0.0 (3) | N5—C7—C9—O2 | −179.2 (2) |
| C17—C3—C4—C5 | −177.1 (2) | C8—C7—C9—O2 | 3.3 (3) |
| C2—C3—C4—C12 | 177.37 (18) | C9—O2—C10—C11 | −87.7 (3) |
| C17—C3—C4—C12 | 0.3 (3) | C3—C4—C12—C13 | −103.8 (3) |
| N1—C1—C5—C4 | −2.2 (3) | C5—C4—C12—C13 | 73.5 (3) |
| N2—C1—C5—C4 | 179.51 (18) | C3—C4—C12—S1 | 70.8 (2) |
| N1—C1—C5—C6 | 177.1 (2) | C5—C4—C12—S1 | −111.9 (2) |
| N2—C1—C5—C6 | −1.2 (2) | C13—C12—S1—C15 | −0.9 (2) |
| C3—C4—C5—C1 | 1.3 (3) | C4—C12—S1—C15 | −176.20 (19) |
| C12—C4—C5—C1 | −176.08 (18) | C4—C12—C13—C14 | 177.2 (2) |
| C3—C4—C5—C6 | −177.6 (2) | S1—C12—C13—C14 | 2.2 (3) |
| C12—C4—C5—C6 | 5.0 (4) | C12—C13—C14—C15 | −2.9 (3) |
| N2—N3—C6—N4 | 178.99 (19) | C13—C14—C15—S1 | 2.3 (4) |
| N2—N3—C6—C5 | 0.4 (3) | C12—S1—C15—C14 | −0.8 (3) |
| H··· | ||||
| N2—H1N2···N1i | 0.89 | 2.07 | 2.941 (3) | 165 |
| N4—H1N4···O1 | 0.85 | 1.99 | 2.642 (3) | 133 |
| C13—H13A···N5ii | 0.93 | 2.62 | 3.463 (3) | 151 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H1 | 0.89 | 2.07 | 2.941 (3) | 165 |
| N4—H1 | 0.85 | 1.99 | 2.642 (3) | 133 |
| C13—H13 | 0.93 | 2.62 | 3.463 (3) | 151 |
Symmetry codes: (i) ; (ii) .