Literature DB >> 22091078

5,7-Dibromo-3-trifluoro-methyl-3,4-dihydro-acridin-1(2H)-one.

Cosmas O Okoro1, Tasneem Siddiquee, Olugbeminiyi O Fadeyi.   

Abstract

In the title compound, C(14)H(8)Br(2)F(3)NO, the mol-ecule is disordered across an approximate non-crystallographic mirror plane, which is in the plane of the fused ring system [The tetrahedral C atom bearing the trifluormethyl substituent is disordered with site occupancy factors of 0.80 (2) and 0.20 (2)]. In the crystal, a one-dimensional stacking of mol-ecules involves inter-actions between the pyridine ring and symmetry-related Br and O atoms of adjacent mol-ecules. The stacking distance between the mean planes of adjacent mol-ecules is 3.395 (4) Å.

Entities:  

Year:  2011        PMID: 22091078      PMCID: PMC3213499          DOI: 10.1107/S1600536811027516

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the anti­cancer activity of the title compound, see: Fadeyi et al. (2008 ▶). For fluorinated acridones, see: Fadeyi et al. (2008 ▶); Mayur et al. (2009 ▶); Svyatkina et al. (1988 ▶). For a related structure, see: Martinez et al. (1995 ▶).

Experimental

Crystal data

C14H8Br2F3NO M = 423.03 Triclinic, a = 5.3303 (10) Å b = 10.926 (2) Å c = 12.354 (2) Å α = 83.349 (6)° β = 85.741 (6)° γ = 85.051 (6)° V = 710.5 (2) Å3 Z = 2 Mo Kα radiation μ = 5.74 mm−1 T = 293 K 0.21 × 0.13 × 0.06 mm

Data collection

Rigaku XtaLAB mini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 1999 ▶; Pflugrath, 1999 ▶) T min = 0.379, T max = 0.725 4444 measured reflections 3153 independent reflections 2188 reflections with I > 2σ(I) R int = 0.050

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.134 S = 0.97 3153 reflections 217 parameters 34 restraints H-atom parameters constrained Δρmax = 0.80 e Å−3 Δρmin = −0.67 e Å−3 Data collection: CrystalClear (Rigaku, 1999 ▶; Pflugrath, 1999 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) as included in WinGX (Farrugia, 1999 ▶); software used to prepare material for publication: WinGX and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811027516/pk2334sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811027516/pk2334Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811027516/pk2334Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H8Br2F3NOZ = 2
Mr = 423.03F(000) = 408
Triclinic, P1Dx = 1.977 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.3303 (10) ÅCell parameters from 3749 reflections
b = 10.926 (2) Åθ = 3.3–27.6°
c = 12.354 (2) ŵ = 5.74 mm1
α = 83.349 (6)°T = 293 K
β = 85.741 (6)°Prism, colorless
γ = 85.051 (6)°0.21 × 0.13 × 0.06 mm
V = 710.5 (2) Å3
Rigaku XtaLAB mini diffractometer2188 reflections with I > 2σ(I)
graphiteRint = 0.050
ω scansθmax = 27.5°, θmin = 3.3°
Absorption correction: multi-scan (CrystalClear; Rigaku, 1999; Pflugrath, 1999)h = −3→6
Tmin = 0.379, Tmax = 0.725k = −14→14
4444 measured reflectionsl = −15→15
3153 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.134H-atom parameters constrained
S = 0.97w = 1/[σ2(Fo2) + (0.0643P)2] where P = (Fo2 + 2Fc2)/3
3153 reflections(Δ/σ)max = 0.001
217 parametersΔρmax = 0.80 e Å3
34 restraintsΔρmin = −0.67 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Br1−0.08381 (9)0.38272 (5)0.91649 (4)0.05150 (19)
Br20.25701 (14)0.07810 (5)0.58890 (5)0.0731 (2)
N10.3349 (7)0.5389 (3)0.8099 (3)0.0420 (9)
O11.0453 (7)0.6599 (4)0.5769 (3)0.0583 (10)
C10.8841 (9)0.6822 (5)0.6495 (4)0.0455 (11)
C20.875 (2)0.7995 (11)0.7024 (11)0.051 (3)0.796 (6)
H2A0.76350.86210.66420.061*0.796 (6)
H2B1.04230.82920.69690.061*0.796 (6)
C30.7812 (11)0.7788 (5)0.8223 (5)0.0418 (14)0.796 (6)
H30.89770.71680.86020.05*0.796 (6)
C110.770 (2)0.8972 (8)0.8778 (9)0.056 (2)0.796 (6)
F10.6920 (9)0.8785 (4)0.9826 (3)0.0747 (14)0.796 (6)
F21.0046 (8)0.9352 (4)0.8774 (4)0.0779 (15)0.796 (6)
F30.6313 (10)0.9893 (4)0.8297 (4)0.0829 (18)0.796 (6)
C40.519 (3)0.7294 (10)0.8318 (9)0.048 (3)0.796 (6)
H4A0.46670.71030.90840.058*0.796 (6)
H4B0.39870.79330.80070.058*0.796 (6)
C2'0.897 (9)0.779 (5)0.718 (5)0.051 (3)0.204 (6)
H2'10.96430.84960.67390.061*0.204 (6)
H2'21.01230.75040.77410.061*0.204 (6)
C3'0.641 (4)0.8190 (18)0.7713 (17)0.044 (5)*0.204 (6)
H3'0.52040.83980.71480.053*0.204 (6)
C11'0.661 (4)0.933 (2)0.831 (2)0.058 (7)*0.204 (6)
F1'0.442 (3)0.9642 (17)0.8836 (14)0.084 (6)*0.204 (6)
F2'0.828 (6)0.897 (3)0.910 (2)0.095 (12)*0.204 (6)
F3'0.754 (4)1.0247 (17)0.7699 (17)0.093 (7)*0.204 (6)
C4'0.546 (13)0.714 (4)0.853 (5)0.048 (3)0.204 (6)
H4'10.38750.73860.89110.058*0.204 (6)
H4'20.66920.68380.90590.058*0.204 (6)
C4A0.5120 (8)0.6143 (4)0.7741 (4)0.0421 (11)
C50.1374 (9)0.3514 (4)0.7950 (4)0.0426 (10)
C60.1224 (9)0.2471 (4)0.7460 (4)0.0489 (12)
H60.00230.19210.77180.059*
C70.2894 (10)0.2233 (4)0.6562 (4)0.0506 (12)
C80.4680 (10)0.3008 (4)0.6163 (4)0.0498 (12)
H80.57530.28320.55630.06*
C8A0.4892 (9)0.4080 (4)0.6668 (3)0.0410 (10)
C90.6745 (9)0.4917 (4)0.6312 (4)0.0436 (11)
H90.78690.47720.57190.052*
C9A0.6878 (9)0.5944 (4)0.6845 (3)0.0410 (10)
C10A0.3249 (8)0.4357 (4)0.7576 (4)0.0408 (10)
U11U22U33U12U13U23
Br10.0544 (3)0.0519 (3)0.0473 (3)−0.0081 (2)0.0128 (2)−0.0092 (2)
Br20.1173 (6)0.0430 (3)0.0626 (4)−0.0170 (3)0.0078 (3)−0.0210 (3)
N10.042 (2)0.043 (2)0.042 (2)−0.0072 (18)0.0037 (17)−0.0121 (17)
O10.058 (2)0.060 (2)0.056 (2)−0.0144 (18)0.0230 (18)−0.0146 (18)
C10.043 (2)0.044 (3)0.048 (3)−0.002 (2)0.002 (2)−0.005 (2)
C20.053 (4)0.047 (5)0.053 (5)−0.008 (3)0.011 (4)−0.011 (4)
C30.048 (3)0.034 (3)0.044 (3)−0.009 (3)0.007 (3)−0.010 (2)
C110.057 (5)0.044 (4)0.069 (5)−0.007 (3)0.007 (5)−0.018 (4)
F10.104 (3)0.064 (3)0.061 (2)−0.014 (2)0.013 (2)−0.035 (2)
F20.070 (3)0.073 (3)0.099 (3)−0.021 (2)0.009 (2)−0.046 (3)
F30.107 (4)0.046 (3)0.097 (4)0.017 (3)−0.016 (3)−0.026 (3)
C40.042 (4)0.060 (4)0.049 (6)−0.009 (4)0.005 (4)−0.026 (4)
C2'0.053 (4)0.047 (5)0.053 (5)−0.008 (3)0.011 (4)−0.011 (4)
C4'0.042 (4)0.060 (4)0.049 (6)−0.009 (4)0.005 (4)−0.026 (4)
C4A0.042 (2)0.042 (3)0.043 (2)−0.003 (2)−0.001 (2)−0.013 (2)
C50.046 (2)0.045 (3)0.037 (2)−0.002 (2)−0.0009 (19)−0.008 (2)
C60.058 (3)0.042 (3)0.046 (3)−0.009 (2)0.002 (2)−0.001 (2)
C70.072 (3)0.034 (3)0.047 (3)−0.002 (2)0.000 (2)−0.011 (2)
C80.061 (3)0.046 (3)0.042 (3)−0.001 (2)0.006 (2)−0.011 (2)
C8A0.050 (3)0.042 (3)0.032 (2)−0.003 (2)0.0028 (19)−0.0085 (19)
C90.048 (3)0.044 (3)0.036 (2)0.002 (2)0.011 (2)−0.007 (2)
C9A0.045 (2)0.040 (3)0.038 (2)−0.002 (2)0.001 (2)−0.009 (2)
C10A0.045 (3)0.038 (2)0.038 (2)0.000 (2)0.001 (2)−0.0072 (19)
Br1—C51.884 (4)C2'—H2'20.97
Br2—C71.901 (5)C3'—C4'1.54 (2)
N1—C4A1.325 (6)C3'—C11'1.538 (19)
N1—C10A1.369 (5)C3'—H3'0.98
O1—C11.226 (5)C11'—F3'1.29 (2)
C1—C2'1.43 (5)C11'—F1'1.33 (2)
C1—C9A1.487 (7)C11'—F2'1.37 (2)
C1—C21.499 (13)C4'—C4A1.57 (6)
C2—C31.526 (11)C4'—H4'10.97
C2—H2A0.97C4'—H4'20.97
C2—H2B0.97C4A—C9A1.420 (6)
C3—C111.527 (9)C5—C61.361 (6)
C3—C41.535 (13)C5—C10A1.433 (6)
C3—H30.98C6—C71.403 (6)
C11—F31.307 (12)C6—H60.93
C11—F11.327 (11)C7—C81.356 (7)
C11—F21.353 (11)C8—C8A1.406 (6)
C4—C4A1.519 (13)C8—H80.93
C4—H4A0.97C8A—C91.415 (7)
C4—H4B0.97C8A—C10A1.416 (6)
C2'—C3'1.52 (2)C9—C9A1.375 (6)
C2'—H2'10.97C9—H90.93
C4A—N1—C10A117.5 (4)F3'—C11'—F1'113 (2)
O1—C1—C2'123.2 (16)F3'—C11'—F2'106 (2)
O1—C1—C9A120.2 (5)F1'—C11'—F2'106 (2)
C2'—C1—C9A115.7 (16)F3'—C11'—C3'113.6 (19)
O1—C1—C2121.1 (5)F1'—C11'—C3'110.7 (17)
C9A—C1—C2118.6 (5)F2'—C11'—C3'106 (2)
C1—C2—C3111.0 (8)C3'—C4'—C4A101 (3)
C1—C2—H2A109.4C3'—C4'—H4'1111.6
C3—C2—H2A109.4C4A—C4'—H4'1111.6
C1—C2—H2B109.4C3'—C4'—H4'2111.6
C3—C2—H2B109.4C4A—C4'—H4'2111.6
H2A—C2—H2B108H4'1—C4'—H4'2109.4
C2—C3—C11112.0 (7)N1—C4A—C9A123.6 (4)
C2—C3—C4109.8 (8)N1—C4A—C4116.9 (5)
C11—C3—C4109.5 (6)C9A—C4A—C4119.5 (5)
C2—C3—H3108.5N1—C4A—C4'113.6 (13)
C11—C3—H3108.5C9A—C4A—C4'121.7 (16)
C4—C3—H3108.5C6—C5—C10A120.9 (4)
F3—C11—F1109.6 (7)C6—C5—Br1119.7 (4)
F3—C11—F2106.5 (7)C10A—C5—Br1119.4 (3)
F1—C11—F2104.9 (10)C5—C6—C7119.6 (5)
F3—C11—C3113.9 (9)C5—C6—H6120.2
F1—C11—C3111.9 (6)C7—C6—H6120.2
F2—C11—C3109.5 (6)C8—C7—C6122.1 (4)
C4A—C4—C3112.7 (8)C8—C7—Br2119.9 (4)
C4A—C4—H4A109.1C6—C7—Br2118.0 (4)
C3—C4—H4A109.1C7—C8—C8A119.2 (4)
C4A—C4—H4B109.1C7—C8—H8120.4
C3—C4—H4B109.1C8A—C8—H8120.4
H4A—C4—H4B107.8C8—C8A—C9122.4 (4)
C1—C2'—C3'113 (4)C8—C8A—C10A120.6 (4)
C1—C2'—H2'1109C9—C8A—C10A117.0 (4)
C3'—C2'—H2'1109C9A—C9—C8A119.8 (4)
C1—C2'—H2'2109C9A—C9—H9120.1
C3'—C2'—H2'2109C8A—C9—H9120.1
H2'1—C2'—H2'2107.8C9—C9A—C4A118.7 (4)
C2'—C3'—C4'110 (2)C9—C9A—C1120.6 (4)
C2'—C3'—C11'110 (2)C4A—C9A—C1120.7 (4)
C4'—C3'—C11'109 (2)N1—C10A—C8A123.4 (4)
C2'—C3'—H3'108.9N1—C10A—C5119.0 (4)
C4'—C3'—H3'108.9C8A—C10A—C5117.6 (4)
C11'—C3'—H3'108.9
O1—C1—C2—C3−147.1 (7)C10A—C5—C6—C7−1.3 (7)
C2'—C1—C2—C3−43 (9)Br1—C5—C6—C7−179.3 (4)
C9A—C1—C2—C334.9 (12)C5—C6—C7—C80.3 (8)
C1—C2—C3—C11−179.8 (8)C5—C6—C7—Br2−178.9 (4)
C1—C2—C3—C4−58.0 (11)C6—C7—C8—C8A0.6 (8)
C2—C3—C11—F356.1 (10)Br2—C7—C8—C8A179.8 (4)
C4—C3—C11—F3−65.8 (9)C7—C8—C8A—C9178.6 (5)
C2—C3—C11—F1−178.9 (10)C7—C8—C8A—C10A−0.6 (7)
C4—C3—C11—F159.1 (11)C8—C8A—C9—C9A−179.3 (4)
C2—C3—C11—F2−63.0 (11)C10A—C8A—C9—C9A−0.2 (7)
C4—C3—C11—F2175.0 (8)C8A—C9—C9A—C4A−0.5 (7)
C2—C3—C4—C4A54.2 (10)C8A—C9—C9A—C1178.9 (4)
C11—C3—C4—C4A177.5 (7)N1—C4A—C9A—C90.2 (7)
O1—C1—C2'—C3'159 (2)C4—C4A—C9A—C9−178.2 (7)
C9A—C1—C2'—C3'−32 (5)C4'—C4A—C9A—C9168 (3)
C2—C1—C2'—C3'76 (10)N1—C4A—C9A—C1−179.1 (4)
C1—C2'—C3'—C4'66 (5)C4—C4A—C9A—C12.5 (9)
C1—C2'—C3'—C11'−173 (3)C4'—C4A—C9A—C1−12 (3)
C2'—C3'—C11'—F3'55 (4)O1—C1—C9A—C9−4.2 (7)
C4'—C3'—C11'—F3'176 (3)C2'—C1—C9A—C9−174 (3)
C2'—C3'—C11'—F1'−176 (3)C2—C1—C9A—C9173.8 (7)
C4'—C3'—C11'—F1'−55 (4)O1—C1—C9A—C4A175.2 (4)
C2'—C3'—C11'—F2'−61 (4)C2'—C1—C9A—C4A6(3)
C4'—C3'—C11'—F2'60 (4)C2—C1—C9A—C4A−6.8 (9)
C2'—C3'—C4'—C4A−64 (5)C4A—N1—C10A—C8A−1.5 (7)
C11'—C3'—C4'—C4A174 (3)C4A—N1—C10A—C5179.4 (4)
C10A—N1—C4A—C9A0.7 (7)C8—C8A—C10A—N1−179.6 (4)
C10A—N1—C4A—C4179.2 (7)C9—C8A—C10A—N11.2 (7)
C10A—N1—C4A—C4'−168 (3)C8—C8A—C10A—C5−0.4 (7)
C3—C4—C4A—N1154.8 (6)C9—C8A—C10A—C5−179.6 (4)
C3—C4—C4A—C9A−26.7 (11)C6—C5—C10A—N1−179.4 (4)
C3—C4—C4A—C4'77 (10)Br1—C5—C10A—N1−1.5 (6)
C3'—C4'—C4A—N1−152 (2)C6—C5—C10A—C8A1.4 (7)
C3'—C4'—C4A—C9A40 (5)Br1—C5—C10A—C8A179.3 (3)
C3'—C4'—C4A—C4−43 (7)
  4 in total

1.  The finer things in X-ray diffraction data collection.

Authors:  J W Pflugrath
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-10

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis of 2-fluoro N(10)-substituted acridones and their cytotoxicity studies in sensitive and resistant cancer cell lines and their DNA intercalation studies.

Authors:  Yergeri C Mayur; Godefridus J Peters; Clara Lemos; Ietje Kathmann; Velivela V S Rajendra Prasad
Journal:  Arch Pharm (Weinheim)       Date:  2009-11       Impact factor: 3.751

4.  Novel fluorinated acridone derivatives. Part 1: synthesis and evaluation as potential anticancer agents.

Authors:  Olugbeminiyi O Fadeyi; Saudat T Adamson; E Lewis Myles; Cosmas O Okoro
Journal:  Bioorg Med Chem Lett       Date:  2008-05-23       Impact factor: 2.823

  4 in total

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