Literature DB >> 22091063

(8aRS)-8,8a-Dihydro-furo[3,2-f]indolizine-6,9(4H,7H)-dione.

Viktor Vrábel, Július Sivý, Lubomír Svorc, Peter Safář, Stefan Marchalín.   

Abstract

The title compound, C(10)H(9)NO(3), is a chiral mol-ecule with one stereogenic carbon atom, but which crystallizes as a racemate in the centrosymmetric space group P2(1)/n. The central six-membered ring of the indolizine moiety adopts a definite envelope conformation, while the conformation of the oxopyrrolidine ring is close to that of a flat-envelope with a maximum deviation of 0.352 (1) Å for the flap atom.

Entities:  

Year:  2011        PMID: 22091063      PMCID: PMC3213484          DOI: 10.1107/S1600536811027383

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For properties of indolizine derivatives, see: Malonne et al. (1998 ▶); Medda et al. (2003 ▶); Sonnet et al. (2000 ▶); Campagna et al. (1990 ▶); Pearson & Guo (2001 ▶); Gupta et al. (2003 ▶); Teklu et al. (2005 ▶). For their role as synthetic targets for pharmaceuticals, see: Gubin et al. (1992 ▶); Ruprecht et al. (1989 ▶). For the synthesis of the title compound, see: Szemes et al. (1998 ▶). For metric comparison with related compounds, see: Pedersen (1967 ▶).

Experimental

Crystal data

C10H9NO3 M = 191.18 Monoclinic, a = 7.63534 (19) Å b = 11.7583 (2) Å c = 9.9234 (3) Å β = 105.775 (3)° V = 857.35 (4) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 298 K 0.49 × 0.23 × 0.13 mm

Data collection

Oxford Diffraction Gemini R CCD diffractometer Absorption correction: analytical (Clark & Reid, 1995 ▶) T min = 0.952, T max = 0.992 14552 measured reflections 2213 independent reflections 1646 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.120 S = 1.03 2213 reflections 127 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.16 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2006 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2001 ▶); software used to prepare material for publication: enCIFer (Allen et al., 2004 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811027383/bg2407sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811027383/bg2407Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811027383/bg2407Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H9NO3F(000) = 400
Mr = 191.18Dx = 1.481 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 7934 reflections
a = 7.63534 (19) Åθ = 3.5–29.3°
b = 11.7583 (2) ŵ = 0.11 mm1
c = 9.9234 (3) ÅT = 298 K
β = 105.775 (3)°Block, yellow
V = 857.35 (4) Å30.49 × 0.23 × 0.13 mm
Z = 4
Oxford Diffraction Gemini R CCD diffractometer2213 independent reflections
Radiation source: fine-focus sealed tube1646 reflections with I > 2σ(I)
graphiteRint = 0.018
Detector resolution: 10.4340 pixels mm-1θmax = 29.4°, θmin = 3.5°
Rotation method data acquisition using ω and φ scansh = −10→10
Absorption correction: analytical (Clark & Reid, 1995)k = −15→14
Tmin = 0.952, Tmax = 0.992l = −13→13
14552 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.120H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.063P)2 + 0.130P] where P = (Fo2 + 2Fc2)/3
2213 reflections(Δ/σ)max < 0.001
127 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.16 e Å3
Experimental. face-indexed (Oxford Diffraction, 2006)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C21.15109 (18)0.99636 (12)0.67889 (14)0.0438 (3)
C31.3182 (2)1.01426 (13)0.62848 (17)0.0543 (4)
H3B1.42371.02850.70680.065*
H3A1.30151.07830.56470.065*
C41.3418 (2)0.90534 (14)0.55443 (18)0.0584 (4)
H4B1.46920.88430.57560.070*
H4A1.29380.91340.45380.070*
C51.23351 (17)0.81624 (11)0.61138 (14)0.0439 (3)
H5A1.31590.77670.69060.053*
C61.13528 (19)0.72915 (11)0.50495 (14)0.0456 (3)
C70.96776 (18)0.69128 (11)0.53212 (13)0.0429 (3)
C80.7398 (2)0.58131 (13)0.53142 (16)0.0539 (4)
H8A0.65570.52230.50950.065*
C90.74188 (18)0.66085 (12)0.62999 (14)0.0475 (3)
H9A0.66230.66710.68580.057*
C100.89106 (17)0.73291 (11)0.63038 (13)0.0408 (3)
C110.96560 (19)0.83359 (13)0.71747 (14)0.0483 (3)
H11B0.86920.88800.71460.058*
H11A1.01720.81060.81400.058*
N11.10563 (14)0.88532 (10)0.66294 (11)0.0425 (3)
O11.07083 (16)1.06761 (9)0.72905 (13)0.0636 (3)
O21.19841 (17)0.69185 (9)0.41368 (12)0.0654 (3)
O30.87461 (14)0.59746 (9)0.46802 (10)0.0535 (3)
U11U22U33U12U13U23
C20.0435 (6)0.0436 (7)0.0472 (7)0.0004 (5)0.0176 (5)0.0013 (5)
C30.0515 (8)0.0506 (8)0.0679 (9)−0.0066 (6)0.0282 (7)0.0042 (7)
C40.0544 (8)0.0586 (9)0.0760 (10)−0.0066 (7)0.0412 (8)−0.0008 (7)
C50.0412 (6)0.0457 (7)0.0519 (7)0.0039 (5)0.0249 (6)0.0033 (6)
C60.0541 (7)0.0405 (7)0.0511 (7)0.0077 (6)0.0294 (6)0.0049 (5)
C70.0476 (7)0.0408 (7)0.0437 (7)0.0003 (5)0.0180 (6)−0.0004 (5)
C80.0480 (8)0.0501 (8)0.0624 (9)−0.0075 (6)0.0131 (7)0.0025 (7)
C90.0428 (7)0.0526 (8)0.0495 (7)−0.0036 (6)0.0169 (6)0.0068 (6)
C100.0419 (6)0.0441 (7)0.0392 (6)−0.0003 (5)0.0161 (5)0.0044 (5)
C110.0504 (7)0.0550 (8)0.0492 (7)−0.0092 (6)0.0301 (6)−0.0073 (6)
N10.0428 (6)0.0440 (6)0.0487 (6)−0.0026 (5)0.0263 (5)−0.0035 (5)
O10.0681 (7)0.0486 (6)0.0852 (8)0.0021 (5)0.0396 (6)−0.0122 (5)
O20.0849 (8)0.0569 (6)0.0742 (7)0.0039 (6)0.0552 (7)−0.0080 (5)
O30.0584 (6)0.0480 (6)0.0559 (6)−0.0029 (4)0.0188 (5)−0.0085 (4)
C2—O11.2211 (16)C6—C71.4472 (18)
C2—N11.3492 (18)C7—C101.3578 (17)
C2—C31.5062 (18)C7—O31.3717 (16)
C3—C41.512 (2)C8—C91.350 (2)
C3—H3B0.9700C8—O31.3579 (18)
C3—H3A0.9700C8—H8A0.9300
C4—C51.5345 (19)C9—C101.4188 (18)
C4—H4B0.9700C9—H9A0.9300
C4—H4A0.9700C10—C111.4848 (19)
C5—N11.4651 (15)C11—N11.4562 (15)
C5—C61.515 (2)C11—H11B0.9700
C5—H5A0.9800C11—H11A0.9700
C6—O21.2176 (16)
O1—C2—N1124.75 (12)C7—C6—C5111.91 (10)
O1—C2—C3127.14 (13)C10—C7—O3110.64 (11)
N1—C2—C3108.08 (11)C10—C7—C6126.76 (13)
C2—C3—C4105.48 (12)O3—C7—C6122.29 (11)
C2—C3—H3B110.6C9—C8—O3112.18 (12)
C4—C3—H3B110.6C9—C8—H8A123.9
C2—C3—H3A110.6O3—C8—H8A123.9
C4—C3—H3A110.6C8—C9—C10105.49 (12)
H3B—C3—H3A108.8C8—C9—H9A127.3
C3—C4—C5104.60 (11)C10—C9—H9A127.3
C3—C4—H4B110.8C7—C10—C9106.58 (12)
C5—C4—H4B110.8C7—C10—C11122.24 (11)
C3—C4—H4A110.8C9—C10—C11131.16 (11)
C5—C4—H4A110.8N1—C11—C10108.71 (10)
H4B—C4—H4A108.9N1—C11—H11B109.9
N1—C5—C6111.56 (10)C10—C11—H11B109.9
N1—C5—C4103.12 (11)N1—C11—H11A109.9
C6—C5—C4114.77 (12)C10—C11—H11A109.9
N1—C5—H5A109.1H11B—C11—H11A108.3
C6—C5—H5A109.1C2—N1—C11123.51 (10)
C4—C5—H5A109.1C2—N1—C5113.76 (10)
O2—C6—C7125.20 (14)C11—N1—C5121.64 (11)
O2—C6—C5122.74 (13)C8—O3—C7105.10 (10)
O1—C2—C3—C4−170.54 (15)C8—C9—C10—C7−0.07 (15)
N1—C2—C3—C411.15 (17)C8—C9—C10—C11−178.40 (15)
C2—C3—C4—C5−20.30 (17)C7—C10—C11—N19.17 (19)
C3—C4—C5—N121.70 (16)C9—C10—C11—N1−172.72 (13)
C3—C4—C5—C6143.24 (13)O1—C2—N1—C11−6.8 (2)
N1—C5—C6—O2152.99 (13)C3—C2—N1—C11171.60 (12)
C4—C5—C6—O236.17 (19)O1—C2—N1—C5−174.95 (14)
N1—C5—C6—C7−31.17 (16)C3—C2—N1—C53.41 (16)
C4—C5—C6—C7−147.98 (12)C10—C11—N1—C2153.77 (12)
O2—C6—C7—C10−178.15 (14)C10—C11—N1—C5−38.95 (17)
C5—C6—C7—C106.1 (2)C6—C5—N1—C2−139.84 (12)
O2—C6—C7—O39.0 (2)C4—C5—N1—C2−16.15 (16)
C5—C6—C7—O3−166.75 (11)C6—C5—N1—C1151.73 (16)
O3—C8—C9—C10−0.56 (16)C4—C5—N1—C11175.42 (12)
O3—C7—C10—C90.67 (15)C9—C8—O3—C70.96 (16)
C6—C7—C10—C9−172.91 (13)C10—C7—O3—C8−0.99 (15)
O3—C7—C10—C11179.19 (12)C6—C7—O3—C8172.92 (13)
C6—C7—C10—C115.6 (2)
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