Literature DB >> 22091015

2-(5-Fluoro-7-methyl-3-methyl-sulfanyl-1-benzofuran-2-yl)acetic acid.

Pil Ja Seo, Hong Dae Choi, Byeng Wha Son, Uk Lee.   

Abstract

The title compound, C(12)H(11)FO(3)S, was prepared by alkaline hydrolysis of ethyl 2-(5-fluoro-7-methyl-3-methyl-sulfanyl-1-benzofuran-2-yl)acetate. In the crystal, the carboxyl groups are involved in inter-molecular O-H⋯O hydrogen bonds, which link the mol-ecules into centrosymmetric dimers.

Entities:  

Year:  2011        PMID: 22091015      PMCID: PMC3213436          DOI: 10.1107/S1600536811026729

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmacological activity of benzofuran compounds, see: Aslam et al. (2009 ▶); Galal et al. (2009 ▶); Khan et al. (2005 ▶). For natural products with benzofuran rings, see: Akgul & Anil (2003 ▶); Soekamto et al. (2003 ▶). For structural studies of related 2-(5-halo-3-methyl­sulfanyl-1-benzofuran-2-yl)acetic acid derivatives, see: Choi et al. (2009 ▶).

Experimental

Crystal data

C12H11FO3S M = 254.27 Monoclinic, a = 16.1747 (9) Å b = 4.9242 (3) Å c = 14.4572 (7) Å β = 91.701 (3)° V = 1150.97 (11) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 173 K 0.42 × 0.19 × 0.09 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.889, T max = 0.975 10241 measured reflections 2873 independent reflections 2114 reflections with I > 2σ(I) R int = 0.050

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.153 S = 1.05 2873 reflections 156 parameters H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811026729/xu5266sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811026729/xu5266Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811026729/xu5266Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H11FO3SF(000) = 528
Mr = 254.27Dx = 1.467 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3638 reflections
a = 16.1747 (9) Åθ = 2.5–27.9°
b = 4.9242 (3) ŵ = 0.29 mm1
c = 14.4572 (7) ÅT = 173 K
β = 91.701 (3)°Block, colourless
V = 1150.97 (11) Å30.42 × 0.19 × 0.09 mm
Z = 4
Bruker SMART APEXII CCD diffractometer2873 independent reflections
Radiation source: rotating anode2114 reflections with I > 2σ(I)
graphite multilayerRint = 0.050
Detector resolution: 10.0 pixels mm-1θmax = 28.4°, θmin = 2.5°
φ and ω scansh = −19→21
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −6→6
Tmin = 0.889, Tmax = 0.975l = −19→19
10241 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: difference Fourier map
wR(F2) = 0.153H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0891P)2 + 0.0162P] where P = (Fo2 + 2Fc2)/3
2873 reflections(Δ/σ)max < 0.001
156 parametersΔρmax = 0.38 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.15190 (3)0.70323 (12)0.30067 (3)0.0375 (2)
F10.38947 (9)−0.1018 (3)0.42507 (7)0.0606 (5)
O10.29563 (7)0.4092 (3)0.10941 (7)0.0292 (3)
O20.10398 (10)0.3674 (3)0.03782 (12)0.0558 (5)
H20.05650.31890.01950.084*
O30.05132 (8)0.7769 (3)0.01681 (10)0.0438 (4)
C10.22446 (10)0.5379 (4)0.23383 (11)0.0273 (4)
C20.28406 (10)0.3388 (4)0.26357 (10)0.0255 (4)
C30.30513 (12)0.2144 (4)0.34788 (11)0.0324 (5)
H30.27820.25790.40350.039*
C40.36662 (11)0.0275 (5)0.34518 (11)0.0355 (5)
C50.40838 (11)−0.0469 (4)0.26625 (11)0.0337 (5)
H50.4506−0.18110.27000.040*
C60.38838 (10)0.0749 (4)0.18228 (11)0.0291 (4)
C70.32623 (11)0.2652 (4)0.18496 (10)0.0257 (4)
C80.23433 (10)0.5719 (4)0.14195 (11)0.0286 (4)
C90.43079 (12)0.0035 (5)0.09414 (12)0.0402 (5)
H9A0.3896−0.05920.04790.060*
H9B0.4713−0.14100.10650.060*
H9C0.45910.16420.07070.060*
C100.18996 (12)0.7432 (5)0.07219 (13)0.0358 (5)
H10A0.22520.76460.01790.043*
H10B0.18150.92590.09890.043*
C110.10771 (11)0.6315 (4)0.04024 (11)0.0292 (4)
C120.07261 (13)0.4483 (5)0.30180 (15)0.0471 (6)
H12A0.05080.41870.23860.071*
H12B0.02780.50870.34110.071*
H12C0.09590.27820.32630.071*
U11U22U33U12U13U23
S10.0334 (3)0.0289 (4)0.0506 (3)0.0038 (2)0.0054 (2)−0.0077 (2)
F10.0761 (9)0.0696 (12)0.0360 (6)0.0303 (8)−0.0012 (5)0.0216 (6)
O10.0293 (6)0.0322 (8)0.0258 (5)0.0010 (6)−0.0025 (4)0.0047 (5)
O20.0470 (9)0.0267 (9)0.0917 (11)−0.0022 (8)−0.0345 (8)0.0036 (9)
O30.0319 (8)0.0305 (9)0.0680 (9)0.0070 (7)−0.0143 (7)0.0012 (7)
C10.0244 (8)0.0239 (10)0.0335 (8)−0.0010 (8)−0.0007 (6)−0.0001 (8)
C20.0238 (8)0.0249 (10)0.0279 (7)−0.0015 (8)0.0001 (6)−0.0010 (7)
C30.0373 (10)0.0343 (12)0.0258 (7)0.0002 (9)0.0020 (7)0.0027 (8)
C40.0401 (10)0.0375 (13)0.0286 (8)0.0040 (10)−0.0042 (7)0.0097 (8)
C50.0296 (9)0.0306 (12)0.0406 (9)0.0063 (9)−0.0022 (7)0.0001 (9)
C60.0246 (8)0.0307 (12)0.0321 (8)−0.0019 (8)0.0007 (6)−0.0042 (8)
C70.0247 (8)0.0278 (11)0.0243 (7)−0.0033 (8)−0.0032 (6)0.0021 (7)
C80.0240 (8)0.0251 (11)0.0362 (8)−0.0015 (8)−0.0052 (6)0.0024 (8)
C90.0342 (10)0.0504 (15)0.0362 (9)0.0065 (10)0.0058 (7)−0.0090 (9)
C100.0359 (10)0.0290 (11)0.0420 (9)−0.0021 (9)−0.0099 (8)0.0080 (9)
C110.0324 (9)0.0257 (11)0.0291 (7)−0.0007 (9)−0.0042 (6)0.0034 (8)
C120.0375 (11)0.0407 (15)0.0637 (12)−0.0032 (11)0.0121 (9)−0.0064 (11)
S1—C11.7440 (17)C5—C61.384 (2)
S1—C121.795 (2)C5—H50.9500
F1—C41.3605 (19)C6—C71.376 (3)
O1—C81.369 (2)C6—C91.507 (2)
O1—C71.382 (2)C8—C101.484 (3)
O2—C111.303 (2)C9—H9A0.9800
O2—H20.8400C9—H9B0.9800
O3—C111.200 (2)C9—H9C0.9800
C1—C81.353 (2)C10—C111.500 (3)
C1—C21.432 (3)C10—H10A0.9900
C2—C71.391 (2)C10—H10B0.9900
C2—C31.397 (2)C12—H12A0.9800
C3—C41.356 (3)C12—H12B0.9800
C3—H30.9500C12—H12C0.9800
C4—C51.392 (2)
C1—S1—C1299.86 (10)C1—C8—O1111.87 (15)
C8—O1—C7105.96 (12)C1—C8—C10131.99 (18)
C11—O2—H2109.5O1—C8—C10116.10 (15)
C8—C1—C2106.36 (15)C6—C9—H9A109.5
C8—C1—S1125.95 (15)C6—C9—H9B109.5
C2—C1—S1127.69 (12)H9A—C9—H9B109.5
C7—C2—C3119.05 (17)C6—C9—H9C109.5
C7—C2—C1105.98 (14)H9A—C9—H9C109.5
C3—C2—C1134.97 (16)H9B—C9—H9C109.5
C4—C3—C2115.62 (15)C8—C10—C11114.05 (16)
C4—C3—H3122.2C8—C10—H10A108.7
C2—C3—H3122.2C11—C10—H10A108.7
C3—C4—F1118.29 (15)C8—C10—H10B108.7
C3—C4—C5125.18 (16)C11—C10—H10B108.7
F1—C4—C5116.52 (18)H10A—C10—H10B107.6
C6—C5—C4119.90 (18)O3—C11—O2123.63 (18)
C6—C5—H5120.0O3—C11—C10121.85 (19)
C4—C5—H5120.0O2—C11—C10114.49 (17)
C7—C6—C5115.00 (15)S1—C12—H12A109.5
C7—C6—C9122.29 (16)S1—C12—H12B109.5
C5—C6—C9122.71 (17)H12A—C12—H12B109.5
C6—C7—O1124.91 (14)S1—C12—H12C109.5
C6—C7—C2125.25 (16)H12A—C12—H12C109.5
O1—C7—C2109.83 (16)H12B—C12—H12C109.5
C12—S1—C1—C897.22 (19)C9—C6—C7—C2179.39 (18)
C12—S1—C1—C2−81.79 (19)C8—O1—C7—C6179.17 (18)
C8—C1—C2—C7−0.3 (2)C8—O1—C7—C2−0.02 (19)
S1—C1—C2—C7178.89 (14)C3—C2—C7—C60.3 (3)
C8—C1—C2—C3−179.4 (2)C1—C2—C7—C6−179.00 (18)
S1—C1—C2—C3−0.2 (3)C3—C2—C7—O1179.47 (16)
C7—C2—C3—C40.0 (3)C1—C2—C7—O10.2 (2)
C1—C2—C3—C4179.0 (2)C2—C1—C8—O10.3 (2)
C2—C3—C4—F1−179.57 (17)S1—C1—C8—O1−178.91 (13)
C2—C3—C4—C5−0.3 (3)C2—C1—C8—C10178.18 (19)
C3—C4—C5—C60.5 (3)S1—C1—C8—C10−1.0 (3)
F1—C4—C5—C6179.75 (17)C7—O1—C8—C1−0.2 (2)
C4—C5—C6—C7−0.3 (3)C7—O1—C8—C10−178.42 (15)
C4—C5—C6—C9−179.8 (2)C1—C8—C10—C11−77.6 (3)
C5—C6—C7—O1−179.19 (16)O1—C8—C10—C11100.2 (2)
C9—C6—C7—O10.3 (3)C8—C10—C11—O3148.89 (18)
C5—C6—C7—C2−0.1 (3)C8—C10—C11—O2−32.9 (2)
D—H···AD—HH···AD···AD—H···A
O2—H2···O3i0.841.872.706 (2)177
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O3i0.841.872.706 (2)177

Symmetry code: (i) .

  8 in total

1.  Benzofurans and another constituent from seeds of Styrax officinalis.

Authors:  Yurdanur Yayla Akgul; Huseyin Anil
Journal:  Phytochemistry       Date:  2003-08       Impact factor: 4.072

2.  A new structural alternative in benzo[b]furans for antimicrobial activity.

Authors:  M Wahab Khan; M Jahangir Alam; M A Rashid; R Chowdhury
Journal:  Bioorg Med Chem       Date:  2005-08-15       Impact factor: 3.641

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Artoindonesianins X and Y, two isoprenylated 2-arylbenzofurans, from Artocarpus fretessi (Moraceae).

Authors:  Nunuk H Soekamto; Sjamsul A Achmad; Emilio L Ghisalberti; Euis H Hakim; Yana M Syah
Journal:  Phytochemistry       Date:  2003-10       Impact factor: 4.072

5.  Synthesis of potent antitumor and antiviral benzofuran derivatives.

Authors:  Shadia A Galal; Amira S Abd El-All; Mohamed M Abdallah; Hoda I El-Diwani
Journal:  Bioorg Med Chem Lett       Date:  2009-03-21       Impact factor: 2.823

6.  Antibacterial and antifungal activity of cicerfuran and related 2-arylbenzofurans and stilbenes.

Authors:  Shazia N Aslam; Philip C Stevenson; Tetsuo Kokubun; David R Hall
Journal:  Microbiol Res       Date:  2007-04-05       Impact factor: 5.415

7.  2-(5-Bromo-3-methyl-sulfanyl-1-benzofuran-2-yl)acetic acid.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-21

8.  2-(5-Fluoro-3-methyl-sulfanyl-1-benzofuran-2-yl)acetic acid.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-11
  8 in total

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