Literature DB >> 22091008

N-(2,4-Dinitro-phen-yl)-1,3-dimeth-oxy-isoindolin-2-amine.

Na-Na Du1, Hua-Jie Xu, Liang-Quan Sheng.   

Abstract

In the title compound, C(16)H(16)N(4)O(6), the planes of the isoindole and dinitro-benzene groups make a dihedral angle between of 84.15 (8)°. The N atom of the isoindole group is displaced by 0.2937 (3) Å from the plane through the remaining atoms. An intra-molecular N-H⋯O inter-action occurs. In the crystal, inversion dimers linked by pairs of N-H⋯O hydrogen bonds occur.

Entities:  

Year:  2011        PMID: 22091008      PMCID: PMC3213429          DOI: 10.1107/S1600536811026316

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to isoindoles and their derivatives, see: Mancilla et al. (2007 ▶); Toru et al. (1986 ▶). For the synthetic method and related structures, see: Maliha et al. (2008 ▶, 2009 ▶).

Experimental

Crystal data

C16H16N4O6 M = 360.33 Triclinic, a = 7.727 (4) Å b = 10.244 (5) Å c = 11.326 (6) Å α = 86.076 (9)° β = 77.705 (8)° γ = 70.794 (8)° V = 827.2 (7) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 296 K 0.16 × 0.14 × 0.10 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.982, T max = 0.989 4365 measured reflections 3181 independent reflections 2045 reflections with I > 2σ(I) R int = 0.062

Refinement

R[F 2 > 2σ(F 2)] = 0.067 wR(F 2) = 0.225 S = 1.02 3181 reflections 237 parameters H-atom parameters constrained Δρmax = 0.49 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2003 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811026316/ez2248sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811026316/ez2248Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811026316/ez2248Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H16N4O6Z = 2
Mr = 360.33F(000) = 376
Triclinic, P1Dx = 1.447 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.727 (4) ÅCell parameters from 1638 reflections
b = 10.244 (5) Åθ = 2.8–27.5°
c = 11.326 (6) ŵ = 0.11 mm1
α = 86.076 (9)°T = 296 K
β = 77.705 (8)°Block, colorless
γ = 70.794 (8)°0.16 × 0.14 × 0.10 mm
V = 827.2 (7) Å3
Bruker SMART APEXII CCD diffractometer3181 independent reflections
Radiation source: fine-focus sealed tube2045 reflections with I > 2σ(I)
graphiteRint = 0.062
phi and ω scansθmax = 26.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −9→8
Tmin = 0.982, Tmax = 0.989k = −11→12
4365 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.067Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.225H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.1489P)2] where P = (Fo2 + 2Fc2)/3
3181 reflections(Δ/σ)max < 0.001
237 parametersΔρmax = 0.49 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.1312 (5)0.1163 (3)0.6041 (3)0.0665 (9)
H10.10320.04000.64170.080*
C20.1069 (5)0.1515 (4)0.4885 (3)0.0741 (10)
H20.06230.09830.44710.089*
C30.1476 (5)0.2646 (4)0.4328 (3)0.0684 (9)
H30.12970.28690.35430.082*
C40.2142 (4)0.3446 (3)0.4915 (3)0.0588 (8)
H40.24140.42120.45390.071*
C50.2401 (4)0.3088 (3)0.6080 (2)0.0451 (6)
C60.1985 (4)0.1974 (3)0.6640 (2)0.0487 (7)
C70.2308 (4)0.1839 (3)0.7897 (2)0.0501 (7)
H70.10960.22050.84500.060*
C80.3055 (4)0.3813 (3)0.6914 (2)0.0450 (6)
H80.20130.46330.72410.054*
C90.4404 (3)0.3127 (2)0.9664 (2)0.0404 (6)
C100.4134 (3)0.3760 (2)1.0796 (2)0.0405 (6)
C110.5561 (4)0.3448 (2)1.1440 (2)0.0436 (6)
H110.53670.38731.21790.052*
C120.7242 (4)0.2512 (3)1.0975 (2)0.0478 (7)
C130.7560 (4)0.1846 (3)0.9883 (2)0.0516 (7)
H130.87140.11930.95890.062*
C140.6169 (4)0.2160 (3)0.9250 (2)0.0496 (7)
H140.63950.17170.85160.060*
C150.4939 (5)−0.0207 (3)0.7495 (4)0.0802 (10)
H15A0.4677−0.06810.68870.120*
H15B0.5744−0.08660.79500.120*
H15C0.55460.04390.71160.120*
C160.6218 (5)0.3179 (3)0.5833 (3)0.0656 (8)
H16A0.67440.25300.64170.098*
H16B0.71280.35900.54130.098*
H16C0.58690.27080.52650.098*
N10.3375 (3)0.2795 (2)0.78934 (18)0.0438 (5)
N20.3060 (3)0.3424 (2)0.90125 (19)0.0499 (6)
H2A0.19820.40130.92890.060*
N30.2382 (3)0.4743 (2)1.13435 (19)0.0478 (6)
N40.8726 (4)0.2154 (3)1.1652 (3)0.0671 (8)
O10.1085 (3)0.5064 (3)1.0803 (2)0.0811 (8)
O20.2215 (3)0.5263 (2)1.23014 (19)0.0758 (7)
O31.0248 (4)0.1387 (4)1.1204 (3)0.1139 (12)
O40.8371 (4)0.2619 (3)1.2668 (3)0.1046 (11)
O50.3227 (3)0.0518 (2)0.8286 (2)0.0697 (6)
O60.4614 (3)0.42259 (18)0.64289 (17)0.0553 (6)
U11U22U33U12U13U23
C10.078 (2)0.0666 (19)0.071 (2)−0.0393 (17)−0.0207 (17)−0.0068 (15)
C20.078 (2)0.087 (2)0.073 (2)−0.0333 (19)−0.0310 (18)−0.0206 (18)
C30.077 (2)0.082 (2)0.0539 (18)−0.0243 (18)−0.0284 (16)−0.0103 (16)
C40.074 (2)0.0550 (17)0.0505 (17)−0.0184 (15)−0.0220 (14)−0.0007 (13)
C50.0475 (15)0.0434 (13)0.0443 (14)−0.0093 (11)−0.0157 (11)−0.0063 (11)
C60.0502 (15)0.0503 (15)0.0488 (15)−0.0158 (12)−0.0156 (12)−0.0062 (12)
C70.0563 (16)0.0491 (15)0.0472 (15)−0.0189 (12)−0.0116 (12)−0.0027 (12)
C80.0533 (15)0.0390 (13)0.0429 (14)−0.0110 (11)−0.0147 (11)−0.0043 (10)
C90.0470 (14)0.0391 (13)0.0373 (13)−0.0139 (11)−0.0139 (11)0.0029 (10)
C100.0463 (14)0.0361 (12)0.0380 (13)−0.0112 (10)−0.0100 (11)0.0007 (10)
C110.0552 (16)0.0383 (13)0.0406 (14)−0.0156 (11)−0.0160 (12)0.0006 (10)
C120.0504 (16)0.0435 (14)0.0530 (16)−0.0139 (12)−0.0208 (12)0.0029 (11)
C130.0493 (16)0.0480 (15)0.0534 (16)−0.0084 (12)−0.0127 (13)−0.0026 (12)
C140.0523 (16)0.0522 (15)0.0425 (14)−0.0110 (13)−0.0131 (12)−0.0060 (12)
C150.087 (3)0.0460 (17)0.101 (3)−0.0132 (17)−0.020 (2)0.0006 (17)
C160.067 (2)0.0663 (19)0.0624 (19)−0.0253 (16)−0.0027 (15)−0.0038 (15)
N10.0538 (13)0.0420 (11)0.0369 (11)−0.0127 (10)−0.0142 (9)−0.0062 (9)
N20.0485 (13)0.0547 (13)0.0413 (12)−0.0047 (10)−0.0136 (10)−0.0118 (10)
N30.0526 (13)0.0487 (12)0.0406 (12)−0.0100 (10)−0.0152 (10)−0.0038 (9)
N40.0626 (17)0.0641 (16)0.0746 (18)−0.0036 (13)−0.0367 (14)−0.0125 (14)
O10.0548 (13)0.1044 (18)0.0684 (15)0.0123 (12)−0.0283 (11)−0.0361 (13)
O20.0744 (15)0.0890 (16)0.0526 (13)0.0012 (12)−0.0230 (11)−0.0312 (11)
O30.0634 (16)0.139 (3)0.122 (2)0.0166 (17)−0.0444 (16)−0.052 (2)
O40.0970 (19)0.111 (2)0.094 (2)0.0161 (16)−0.0634 (16)−0.0374 (17)
O50.0905 (16)0.0517 (12)0.0685 (14)−0.0258 (11)−0.0194 (12)0.0151 (10)
O60.0670 (13)0.0474 (11)0.0574 (12)−0.0267 (10)−0.0108 (10)−0.0039 (9)
C1—C21.369 (5)C10—N31.436 (3)
C1—C61.390 (4)C11—C121.357 (4)
C1—H10.9300C11—H110.9300
C2—C31.376 (5)C12—C131.390 (4)
C2—H20.9300C12—N41.448 (4)
C3—C41.370 (4)C13—C141.358 (4)
C3—H30.9300C13—H130.9300
C4—C51.384 (4)C14—H140.9300
C4—H40.9300C15—O51.430 (4)
C5—C61.365 (4)C15—H15A0.9600
C5—C81.499 (3)C15—H15B0.9600
C6—C71.486 (4)C15—H15C0.9600
C7—O51.396 (4)C16—O61.418 (4)
C7—N11.473 (3)C16—H16A0.9600
C7—H70.9800C16—H16B0.9600
C8—O61.397 (3)C16—H16C0.9600
C8—N11.472 (3)N1—N21.399 (3)
C8—H80.9800N2—H2A0.8600
C9—N21.343 (3)N3—O21.205 (3)
C9—C141.401 (4)N3—O11.227 (3)
C9—C101.421 (3)N4—O31.204 (3)
C10—C111.388 (4)N4—O41.217 (3)
C2—C1—C6118.4 (3)C12—C11—H11120.5
C2—C1—H1120.8C10—C11—H11120.5
C6—C1—H1120.8C11—C12—C13121.7 (2)
C1—C2—C3121.0 (3)C11—C12—N4119.4 (3)
C1—C2—H2119.5C13—C12—N4118.8 (2)
C3—C2—H2119.5C14—C13—C12119.3 (3)
C4—C3—C2120.8 (3)C14—C13—H13120.4
C4—C3—H3119.6C12—C13—H13120.4
C2—C3—H3119.6C13—C14—C9122.3 (2)
C3—C4—C5118.4 (3)C13—C14—H14118.8
C3—C4—H4120.8C9—C14—H14118.8
C5—C4—H4120.8O5—C15—H15A109.5
C6—C5—C4121.1 (3)O5—C15—H15B109.5
C6—C5—C8110.5 (2)H15A—C15—H15B109.5
C4—C5—C8128.4 (3)O5—C15—H15C109.5
C5—C6—C1120.4 (3)H15A—C15—H15C109.5
C5—C6—C7110.8 (2)H15B—C15—H15C109.5
C1—C6—C7128.8 (3)O6—C16—H16A109.5
O5—C7—N1112.1 (2)O6—C16—H16B109.5
O5—C7—C6117.2 (2)H16A—C16—H16B109.5
N1—C7—C6101.9 (2)O6—C16—H16C109.5
O5—C7—H7108.4H16A—C16—H16C109.5
N1—C7—H7108.4H16B—C16—H16C109.5
C6—C7—H7108.4N2—N1—C8112.18 (19)
O6—C8—N1113.0 (2)N2—N1—C7113.7 (2)
O6—C8—C5117.0 (2)C8—N1—C7110.43 (19)
N1—C8—C5101.6 (2)C9—N2—N1121.4 (2)
O6—C8—H8108.3C9—N2—H2A119.3
N1—C8—H8108.3N1—N2—H2A119.3
C5—C8—H8108.3O2—N3—O1121.1 (2)
N2—C9—C14121.0 (2)O2—N3—C10120.2 (2)
N2—C9—C10122.7 (2)O1—N3—C10118.7 (2)
C14—C9—C10116.3 (2)O3—N4—O4122.5 (3)
C11—C10—C9121.4 (2)O3—N4—C12119.1 (3)
C11—C10—N3116.3 (2)O4—N4—C12118.4 (3)
C9—C10—N3122.3 (2)C7—O5—C15114.8 (2)
C12—C11—C10118.9 (2)C8—O6—C16115.8 (2)
C6—C1—C2—C3−0.2 (5)N4—C12—C13—C14179.1 (3)
C1—C2—C3—C40.2 (5)C12—C13—C14—C9−0.6 (4)
C2—C3—C4—C50.2 (5)N2—C9—C14—C13179.4 (2)
C3—C4—C5—C6−0.7 (4)C10—C9—C14—C13−0.6 (4)
C3—C4—C5—C8−178.1 (3)O6—C8—N1—N284.6 (3)
C4—C5—C6—C10.8 (4)C5—C8—N1—N2−149.3 (2)
C8—C5—C6—C1178.6 (3)O6—C8—N1—C7−147.5 (2)
C4—C5—C6—C7−177.7 (2)C5—C8—N1—C7−21.3 (3)
C8—C5—C6—C70.2 (3)O5—C7—N1—N2−85.2 (3)
C2—C1—C6—C5−0.3 (5)C6—C7—N1—N2148.6 (2)
C2—C1—C6—C7177.8 (3)O5—C7—N1—C8147.7 (2)
C5—C6—C7—O5−135.8 (3)C6—C7—N1—C821.5 (3)
C1—C6—C7—O546.0 (4)C14—C9—N2—N1−0.8 (4)
C5—C6—C7—N1−13.0 (3)C10—C9—N2—N1179.2 (2)
C1—C6—C7—N1168.7 (3)C8—N1—N2—C9−122.1 (3)
C6—C5—C8—O6136.2 (2)C7—N1—N2—C9111.7 (3)
C4—C5—C8—O6−46.1 (4)C11—C10—N3—O21.0 (4)
C6—C5—C8—N112.7 (3)C9—C10—N3—O2−179.5 (3)
C4—C5—C8—N1−169.6 (3)C11—C10—N3—O1179.2 (2)
N2—C9—C10—C11−179.0 (2)C9—C10—N3—O1−1.4 (4)
C14—C9—C10—C111.0 (4)C11—C12—N4—O3−175.6 (3)
N2—C9—C10—N31.6 (4)C13—C12—N4—O36.7 (5)
C14—C9—C10—N3−178.4 (2)C11—C12—N4—O46.0 (5)
C9—C10—C11—C12−0.3 (4)C13—C12—N4—O4−171.6 (3)
N3—C10—C11—C12179.2 (2)N1—C7—O5—C15−66.5 (3)
C10—C11—C12—C13−1.0 (4)C6—C7—O5—C1550.8 (3)
C10—C11—C12—N4−178.6 (2)N1—C8—O6—C1664.6 (3)
C11—C12—C13—C141.5 (4)C5—C8—O6—C16−52.9 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O10.861.962.593 (3)130
N2—H2A···O1i0.862.273.032 (3)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O10.861.962.593 (3)130
N2—H2A⋯O1i0.862.273.032 (3)148

Symmetry code: (i) .

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