Literature DB >> 21201958

1-Oxoisoindoline-2-carboxamide.

Bushra Maliha, Ishtiaq Hussain, M Nawaz Tahir, Muhammad Ilyas Tariq, Hamid Latif Siddiqui.   

Abstract

The title mol-ecule, C(9)H(8)N(2)O(2), is essentially planar. The crystal structure is stabilized by hydrogen bonding. An intra-molecular N-H⋯O hydrogen bond results in a six-membered ring. Each mol-ecule inter-acts with two others through N-H⋯O and C-H⋯O hydrogen bonding, resulting in the formation of nine-membered rings. These hydrogen bonds generate a two-dimensional polymeric network. There are also π-π inter-actions between the aromatic and heterocyclic rings [centroid-centroid distance 3.638 (2) Å].

Entities:  

Year:  2008        PMID: 21201958      PMCID: PMC2960760          DOI: 10.1107/S1600536808004923

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Berger et al. (1999 ▶); Cignarella et al. (1981 ▶); Goddard (1977 ▶); Goddard & Levitt (1979 ▶); Maliha et al. (2007 ▶); Mancilla et al. (2007 ▶); Momose (1980 ▶); Zuman (2004 ▶).

Experimental

Crystal data

C9H8N2O2 M = 176.17 Orthorhombic, a = 3.9839 (3) Å b = 7.8732 (8) Å c = 25.651 (2) Å V = 804.58 (13) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 296 (2) K 0.25 × 0.12 × 0.10 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.975, T max = 0.990 5461 measured reflections 1254 independent reflections 860 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.138 S = 1.07 1254 reflections 124 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2003 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808004923/at2545sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808004923/at2545Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H8N2O2F000 = 368
Mr = 176.17Dx = 1.454 Mg m3
Orthorhombic, P212121Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 1295 reflections
a = 3.9839 (3) Åθ = 1.6–28.6º
b = 7.8732 (8) ŵ = 0.11 mm1
c = 25.651 (2) ÅT = 296 (2) K
V = 804.58 (13) Å3Needle, colourless
Z = 40.25 × 0.12 × 0.10 mm
Bruker KappaAPEXII CCD diffractometer1254 independent reflections
Radiation source: fine-focus sealed tube860 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.037
Detector resolution: 7.40 pixels mm-1θmax = 28.6º
T = 296(2) Kθmin = 1.6º
ω scansh = −3→5
Absorption correction: multi-scan(SADABS; Bruker, 2005)k = −9→10
Tmin = 0.975, Tmax = 0.990l = −34→22
5461 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.138  w = 1/[σ2(Fo2) + (0.0804P)2] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
1254 reflectionsΔρmax = 0.23 e Å3
124 parametersΔρmin = −0.22 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.1443 (8)0.5881 (3)0.09333 (8)0.0599 (8)
O20.3962 (6)0.7070 (2)0.24721 (7)0.0479 (7)
N10.1909 (7)0.7618 (2)0.16626 (8)0.0335 (6)
N20.3940 (9)0.4951 (3)0.18736 (10)0.0512 (8)
H2A0.346 (10)0.476 (4)0.1514 (13)0.061*
H2B0.478 (10)0.421 (4)0.2092 (14)0.061*
C10.1002 (9)0.7240 (3)0.11498 (10)0.0380 (7)
C2−0.0491 (8)0.8806 (3)0.09388 (10)0.0351 (7)
C3−0.1770 (10)0.9115 (4)0.04430 (11)0.0450 (8)
H3−0.17800.82690.01900.054*
C4−0.3025 (9)1.0715 (4)0.03378 (12)0.0491 (8)
H4−0.39031.09520.00100.059*
C5−0.2985 (9)1.1968 (4)0.07165 (12)0.0489 (9)
H5−0.38371.30380.06390.059*
C6−0.1693 (9)1.1655 (4)0.12114 (11)0.0427 (7)
H6−0.16521.25040.14630.051*
C7−0.0474 (8)1.0053 (3)0.13185 (10)0.0343 (7)
C80.1037 (9)0.9367 (3)0.18109 (9)0.0335 (7)
H8A0.30141.00060.19120.040*
H8B−0.05690.93840.20950.040*
C90.3350 (8)0.6532 (3)0.20346 (10)0.0350 (7)
U11U22U33U12U13U23
O10.102 (2)0.0398 (11)0.0383 (10)0.0154 (14)−0.0116 (14)−0.0118 (9)
O20.0734 (18)0.0362 (11)0.0340 (10)0.0018 (12)−0.0113 (11)0.0002 (8)
N10.0453 (16)0.0263 (10)0.0289 (10)0.0045 (11)−0.0024 (10)−0.0006 (8)
N20.081 (2)0.0327 (13)0.0404 (13)0.0173 (15)−0.0087 (15)0.0015 (10)
C10.050 (2)0.0358 (14)0.0286 (12)−0.0004 (15)−0.0013 (13)−0.0047 (11)
C20.0382 (18)0.0348 (14)0.0323 (12)0.0001 (13)0.0018 (13)0.0021 (11)
C30.050 (2)0.0502 (17)0.0345 (13)0.0036 (18)−0.0019 (14)0.0011 (13)
C40.047 (2)0.064 (2)0.0366 (13)0.0042 (19)−0.0034 (14)0.0140 (14)
C50.047 (2)0.0477 (18)0.0518 (17)0.0100 (17)0.0017 (16)0.0159 (15)
C60.0473 (19)0.0352 (14)0.0455 (15)0.0051 (16)0.0040 (15)0.0022 (12)
C70.0365 (18)0.0344 (14)0.0321 (12)0.0019 (13)0.0018 (12)0.0016 (11)
C80.0437 (19)0.0274 (12)0.0293 (11)0.0002 (14)0.0001 (12)−0.0027 (10)
C90.0408 (18)0.0314 (13)0.0326 (12)−0.0014 (15)0.0028 (13)0.0020 (11)
O1—C11.218 (3)C3—C41.382 (4)
O2—C91.224 (3)C3—H30.9300
N1—C11.396 (3)C4—C51.385 (5)
N1—C91.404 (3)C4—H40.9300
N1—C81.470 (3)C5—C61.392 (4)
N2—C91.332 (3)C5—H50.9300
N2—H2A0.95 (3)C6—C71.379 (4)
N2—H2B0.87 (3)C6—H60.9300
C1—C21.472 (4)C7—C81.500 (4)
C2—C71.383 (4)C8—H8A0.9700
C2—C31.392 (4)C8—H8B0.9700
C1—N1—C9128.0 (2)C4—C5—C6121.2 (3)
C1—N1—C8112.5 (2)C4—C5—H5119.4
C9—N1—C8119.4 (2)C6—C5—H5119.4
C9—N2—H2A114 (2)C7—C6—C5118.3 (3)
C9—N2—H2B120 (2)C7—C6—H6120.8
H2A—N2—H2B126 (3)C5—C6—H6120.8
O1—C1—N1125.4 (3)C6—C7—C2120.5 (2)
O1—C1—C2128.8 (2)C6—C7—C8129.7 (2)
N1—C1—C2105.8 (2)C2—C7—C8109.8 (2)
C7—C2—C3121.4 (3)N1—C8—C7102.36 (19)
C7—C2—C1109.5 (2)N1—C8—H8A111.3
C3—C2—C1129.1 (2)C7—C8—H8A111.3
C4—C3—C2118.1 (3)N1—C8—H8B111.3
C4—C3—H3121.0C7—C8—H8B111.3
C2—C3—H3121.0H8A—C8—H8B109.2
C3—C4—C5120.6 (3)O2—C9—N2124.9 (3)
C3—C4—H4119.7O2—C9—N1119.6 (2)
C5—C4—H4119.7N2—C9—N1115.5 (2)
C9—N1—C1—O1−2.8 (5)C5—C6—C7—C8−179.9 (3)
C8—N1—C1—O1−179.9 (3)C3—C2—C7—C6−0.9 (5)
C9—N1—C1—C2178.1 (3)C1—C2—C7—C6178.8 (3)
C8—N1—C1—C21.0 (3)C3—C2—C7—C8179.9 (3)
O1—C1—C2—C7−179.5 (3)C1—C2—C7—C8−0.4 (4)
N1—C1—C2—C7−0.4 (4)C1—N1—C8—C7−1.2 (3)
O1—C1—C2—C30.2 (6)C9—N1—C8—C7−178.5 (2)
N1—C1—C2—C3179.3 (3)C6—C7—C8—N1−178.1 (3)
C7—C2—C3—C40.2 (5)C2—C7—C8—N10.9 (3)
C1—C2—C3—C4−179.5 (3)C1—N1—C9—O2−179.3 (3)
C2—C3—C4—C50.3 (5)C8—N1—C9—O2−2.4 (4)
C3—C4—C5—C6−0.1 (5)C1—N1—C9—N20.6 (5)
C4—C5—C6—C7−0.6 (5)C8—N1—C9—N2177.5 (3)
C5—C6—C7—C21.1 (5)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O10.95 (3)1.91 (3)2.710 (3)140 (2)
N2—H2B···O2i0.88 (3)2.08 (3)2.943 (3)167 (3)
C8—H8A···O2ii0.972.573.447 (4)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O10.95 (3)1.91 (3)2.710 (3)140 (2)
N2—H2B⋯O2i0.88 (3)2.08 (3)2.943 (3)167 (3)
C8—H8A⋯O2ii0.972.573.447 (4)151

Symmetry codes: (i) ; (ii) .

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