Literature DB >> 22091006

Ethyl 2-[(carbamothioyl-amino)-imino]-propano-ate.

Charlane C Corrêa, José Eugênio J C Graúdo, Luiz Fernando C de Oliveira, Mauro V de Almeida, Renata Diniz.   

Abstract

The title compound, C(6)H(11)N(3)O(2)S, consists of a roughly planar mol-ecule (r.m.s deviation from planarity = 0.077 Å for the non-H atoms) and has the S atom in an anti position to the imine N atom. This N atom is the acceptor of a strongly bent inter-nal N-H⋯N hydrogen bond donated by the amino group. In the crystal, mol-ecules are arranged in undulating layers parallel to (010). The mol-ecules are linked via inter-molecular amino-carboxyl N-H⋯O hydrogen bonds, forming chains parallel to [001]. The chains are cross-linked by N(carbazone)-H⋯S and C-H⋯S inter-actions, forming infinite sheets.

Entities:  

Year:  2011        PMID: 22091006      PMCID: PMC3212349          DOI: 10.1107/S1600536811026237

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of thio­semicarbazones, see: Gupta & Narayana (1997 ▶); Li et al. (1998 ▶); Tarasconi et al. (2000 ▶); Holla et al. (2003 ▶); Shailendra et al. (2003 ▶). For the synthesis, crystal structures and applications of thio­semicarbazones, see: West et al. (1993 ▶); Casas et al. (2000 ▶); Beraldo (2004 ▶); Tenório et al. (2005 ▶). For graph-set notation, see: Etter et al. (1990 ▶).

Experimental

Crystal data

C6H11N3O2S M = 189.24 Monoclinic, a = 16.682 (3) Å b = 7.2558 (15) Å c = 17.317 (4) Å β = 116.63 (3)° V = 1873.8 (7) Å3 Z = 8 Mo Kα radiation μ = 0.31 mm−1 T = 297 K 0.56 × 0.27 × 0.12 mm

Data collection

Bruker–Nonius KappaCCD diffractometer 15270 measured reflections 2133 independent reflections 1785 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.092 S = 1.08 2133 reflections 123 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.26 e Å−3 Data collection: COLLECT (Hooft, 1999 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811026237/qk2014sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811026237/qk2014Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811026237/qk2014Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H11N3O2SF(000) = 800
Mr = 189.24Dx = 1.342 Mg m3
Monoclinic, C2/cMelting point: 418 K
Hall symbol: -C 2ycMo Kα radiation, λ = 0.71073 Å
a = 16.682 (3) ÅCell parameters from 106 reflections
b = 7.2558 (15) Åθ = 4.7–22.6°
c = 17.317 (4) ŵ = 0.31 mm1
β = 116.63 (3)°T = 297 K
V = 1873.8 (7) Å3Prism, colourless
Z = 80.56 × 0.27 × 0.12 mm
Bruker–Nonius KappaCCD diffractometer1785 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.021
horizonally mounted graphite crystalθmax = 27.5°, θmin = 5.3°
Detector resolution: 9 pixels mm-1h = −21→21
ω and φ scansk = −9→9
15270 measured reflectionsl = −22→22
2133 independent reflections
Refinement on F20 restraints
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.092w = 1/[σ2(Fo2) + (0.0423P)2 + 1.1077P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
2133 reflectionsΔρmax = 0.21 e Å3
123 parametersΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.07816 (2)0.66899 (7)0.18273 (2)0.05007 (15)
O10.36286 (7)0.42826 (16)0.55879 (6)0.0453 (3)
O20.29362 (8)0.4511 (2)0.64308 (7)0.0599 (4)
N30.21829 (8)0.52146 (17)0.42323 (7)0.0363 (3)
N20.14791 (8)0.57872 (18)0.34827 (7)0.0394 (3)
N10.23628 (9)0.5179 (2)0.28107 (9)0.0541 (4)
C20.21056 (9)0.5244 (2)0.49384 (9)0.0365 (3)
C10.15936 (9)0.5823 (2)0.27447 (9)0.0368 (3)
C40.29221 (9)0.4639 (2)0.57299 (9)0.0378 (3)
C30.13145 (10)0.5866 (3)0.50629 (11)0.0507 (4)
H3A0.12980.71890.50690.076*
H3B0.13650.53980.56010.076*
H3C0.07730.54100.45980.076*
C60.51684 (12)0.3513 (3)0.60556 (14)0.0644 (5)
H6A0.49770.25880.56130.097*
H6B0.57130.31220.65370.097*
H6C0.52720.46500.58310.097*
C50.44536 (10)0.3796 (3)0.63469 (11)0.0503 (4)
H5A0.43680.26770.66070.060*
H5B0.46260.47770.67720.060*
H1N0.2740 (14)0.476 (3)0.3288 (14)0.061 (6)*
H3N0.0969 (12)0.612 (2)0.3430 (11)0.045 (4)*
H2N0.2477 (13)0.525 (3)0.2361 (14)0.060 (5)*
U11U22U33U12U13U23
S10.0402 (2)0.0741 (3)0.0365 (2)0.00740 (18)0.01775 (16)0.01065 (17)
O10.0387 (5)0.0663 (7)0.0337 (5)0.0055 (5)0.0186 (4)0.0026 (5)
O20.0558 (7)0.0988 (10)0.0322 (5)0.0012 (6)0.0260 (5)−0.0006 (6)
N30.0358 (6)0.0444 (6)0.0318 (5)−0.0029 (5)0.0179 (5)−0.0016 (5)
N20.0344 (6)0.0552 (8)0.0339 (6)0.0028 (5)0.0200 (5)0.0027 (5)
N10.0421 (7)0.0910 (12)0.0369 (7)0.0153 (7)0.0246 (6)0.0118 (7)
C20.0385 (7)0.0425 (7)0.0343 (6)−0.0052 (6)0.0213 (6)−0.0043 (6)
C10.0352 (6)0.0456 (8)0.0333 (6)−0.0042 (6)0.0185 (5)−0.0004 (6)
C40.0415 (7)0.0440 (8)0.0334 (7)−0.0053 (6)0.0216 (6)−0.0056 (6)
C30.0431 (8)0.0733 (11)0.0454 (8)0.0025 (8)0.0284 (7)−0.0012 (8)
C60.0447 (9)0.0665 (12)0.0798 (13)0.0050 (8)0.0259 (9)−0.0007 (10)
C50.0430 (8)0.0574 (10)0.0432 (8)0.0009 (7)0.0128 (7)0.0070 (7)
S1—C11.6808 (16)N1—H1N0.84 (2)
O1—C41.3325 (17)N1—H2N0.88 (2)
O1—C51.4577 (19)N2—H3N0.85 (2)
O2—C41.2069 (17)C3—H3A0.9600
N3—C21.2860 (17)C3—H3B0.9600
N3—N21.3675 (17)C3—H3C0.9600
N2—C11.3745 (17)C5—H5A0.9700
N1—C11.3217 (19)C5—H5B0.9700
C2—C31.4989 (19)C6—H6A0.9600
C2—C41.501 (2)C6—H6B0.9600
C6—C51.503 (2)C6—H6C0.9600
C4—O1—C5115.86 (11)C2—C3—H3A109.00
C2—N3—N2119.23 (12)C2—C3—H3B109.00
N3—N2—C1118.06 (11)C2—C3—H3C109.00
N3—C2—C3127.72 (14)H3A—C3—H3B109.00
N3—C2—C4115.25 (12)H3A—C3—H3C109.00
C3—C2—C4117.00 (12)H3B—C3—H3C109.00
N1—C1—N2116.55 (13)O1—C5—H5A110.00
N1—C1—S1123.64 (11)O1—C5—H5B110.00
N2—C1—S1119.80 (11)C6—C5—H5A110.00
O2—C4—O1123.40 (14)C6—C5—H5B110.00
O2—C4—C2122.77 (13)H5A—C5—H5B108.00
O1—C4—C2113.83 (11)C5—C6—H6A109.00
O1—C5—C6107.52 (14)C5—C6—H6B109.00
C1—N1—H1N118.9 (17)C5—C6—H6C109.00
C1—N1—H2N119.2 (15)H6A—C6—H6B109.00
H1N—N1—H2N122 (2)H6A—C6—H6C109.00
C1—N2—H3N116.4 (12)H6B—C6—H6C109.00
N3—N2—H3N125.5 (12)
C5—O1—C4—O2−2.7 (2)N2—N3—C2—C3−0.6 (2)
C5—O1—C4—C2176.48 (14)N2—N3—C2—C4−178.40 (13)
C4—O1—C5—C6−178.14 (15)N3—C2—C4—O14.43 (19)
C1—N2—N3—C2177.04 (14)N3—C2—C4—O2−176.40 (15)
N3—N2—C1—S1−174.66 (11)C3—C2—C4—O1−173.59 (15)
N3—N2—C1—N14.4 (2)C3—C2—C4—O25.6 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1N···N30.84 (2)2.24 (2)2.610 (2)107 (2)
N1—H2N···O2i0.88 (3)2.08 (3)2.954 (2)172 (2)
N2—H3N···S1ii0.85 (2)2.78 (2)3.623 (2)172 (2)
C3—H3C···S1ii0.962.823.611 (2)141
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯N30.84 (2)2.24 (2)2.610 (2)107 (2)
N1—H2N⋯O2i0.88 (3)2.08 (3)2.954 (2)172 (2)
N2—H3N⋯S1ii0.85 (2)2.78 (2)3.623 (2)172 (2)
C3—H3C⋯S1ii0.962.823.611 (2)141

Symmetry codes: (i) ; (ii) .

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