Literature DB >> 22091004

2-(4-Fluoro-phen-yl)-1-phenyl-1H-imidazo[4,5-f][1,10]phenanthroline monohydrate.

S Rosepriya, M Venkatesh Perumal, A Thiruvalluvar, J Jayabharathi, R J Butcher, J P Jasinski, J A Golen.   

Abstract

In the title compound, C(25)H(15)FN(4)·H(2)O, the fused ring system is essentially planar [maximum deviation of 0.0822 (14) Å]. The imidazole ring makes dihedral angles of 76.83 (7) and 32.22 (7)° with the phenyl group attached to nitro-gen and the fluoro-benzene group to carbon, respectively. The dihedral angle between the two phenyl rings is 72.13 (7)°. Inter-molecular O-H⋯N, O-H⋯F, C-H⋯F, C-H⋯O and C-H⋯N hydrogen bonds are found in the crystal structure.

Entities:  

Year:  2011        PMID: 22091004      PMCID: PMC3212347          DOI: 10.1107/S1600536811026328

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Rosepriya et al. (2011 ▶). For technological and biological applications of related compounds, see: Liu et al. (2005 ▶); Bian et al. (2002 ▶).

Experimental

Crystal data

C25H15FN4·H2O M = 408.43 Triclinic, a = 9.0103 (10) Å b = 10.0946 (9) Å c = 11.3994 (9) Å α = 86.987 (7)° β = 75.950 (8)° γ = 82.396 (8)° V = 996.75 (17) Å3 Z = 2 Cu Kα radiation μ = 0.75 mm−1 T = 170 K 0.34 × 0.25 × 0.20 mm

Data collection

Oxford Diffraction Xcalibur Eos Gemini diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010 ▶) T min = 0.784, T max = 0.864 6315 measured reflections 3765 independent reflections 3382 reflections with I > 2σ(I) R int = 0.013

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.122 S = 1.04 3765 reflections 288 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.20 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED (Oxford Diffraction, 2010 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811026328/hg5061sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811026328/hg5061Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H15FN4·H2OZ = 2
Mr = 408.43F(000) = 424
Triclinic, P1Dx = 1.361 Mg m3
Hall symbol: -P 1Melting point: 567 K
a = 9.0103 (10) ÅCu Kα radiation, λ = 1.54178 Å
b = 10.0946 (9) ÅCell parameters from 4456 reflections
c = 11.3994 (9) Åθ = 4.0–71.6°
α = 86.987 (7)°µ = 0.75 mm1
β = 75.950 (8)°T = 170 K
γ = 82.396 (8)°Block, pale-yellow
V = 996.75 (17) Å30.34 × 0.25 × 0.20 mm
Oxford Diffraction Xcalibur Eos Gemini diffractometer3765 independent reflections
Radiation source: Enhance (Cu) X-ray Source3382 reflections with I > 2σ(I)
graphiteRint = 0.013
Detector resolution: 16.1500 pixels mm-1θmax = 71.7°, θmin = 4.0°
ω scansh = −10→10
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010)k = −12→11
Tmin = 0.784, Tmax = 0.864l = −13→9
6315 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.122H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0685P)2 + 0.1908P] where P = (Fo2 + 2Fc2)/3
3765 reflections(Δ/σ)max = 0.001
288 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F40.97668 (13)−0.28116 (12)0.54415 (10)0.0786 (4)
N10.92907 (12)0.16988 (11)0.12069 (9)0.0359 (3)
N31.18158 (12)0.09894 (11)0.08946 (10)0.0391 (3)
N101.01571 (15)0.48776 (13)−0.23133 (12)0.0521 (4)
N131.31915 (15)0.39690 (13)−0.26380 (11)0.0501 (4)
C21.04372 (15)0.08612 (13)0.15819 (11)0.0369 (4)
C41.15633 (15)0.19490 (13)0.00436 (11)0.0368 (4)
C51.00239 (15)0.24120 (13)0.02073 (11)0.0358 (4)
C60.94466 (15)0.34434 (13)−0.05427 (12)0.0372 (4)
C70.79054 (17)0.40253 (15)−0.03881 (14)0.0457 (4)
C80.75310 (18)0.49897 (16)−0.11884 (15)0.0532 (5)
C90.8689 (2)0.53716 (17)−0.21396 (16)0.0584 (5)
C111.05532 (16)0.39312 (13)−0.15231 (12)0.0394 (4)
C121.21950 (16)0.34406 (14)−0.17030 (12)0.0400 (4)
C141.46849 (18)0.35781 (17)−0.27695 (15)0.0551 (5)
C151.52874 (18)0.26431 (17)−0.20121 (15)0.0529 (5)
C161.42936 (16)0.20624 (16)−0.10893 (13)0.0456 (4)
C171.27071 (15)0.24631 (14)−0.09146 (12)0.0380 (4)
C180.76897 (14)0.19088 (13)0.18319 (11)0.0353 (3)
C190.66066 (16)0.13798 (15)0.13745 (13)0.0433 (4)
C200.50721 (17)0.15814 (17)0.19911 (14)0.0515 (5)
C210.46428 (17)0.22966 (18)0.30488 (15)0.0545 (5)
C220.57309 (18)0.28226 (17)0.34889 (14)0.0540 (5)
C230.72683 (17)0.26361 (14)0.28769 (13)0.0441 (4)
C241.01826 (15)−0.00849 (13)0.26178 (12)0.0383 (4)
C250.88803 (18)−0.07485 (15)0.29655 (13)0.0458 (4)
C260.87439 (19)−0.16753 (16)0.39112 (14)0.0518 (5)
C270.99130 (19)−0.19174 (16)0.45003 (14)0.0525 (5)
C281.12160 (18)−0.12905 (18)0.41907 (15)0.0563 (5)
C291.13416 (16)−0.03709 (16)0.32457 (14)0.0483 (5)
O1W0.26297 (19)0.49467 (15)0.50499 (13)0.0729 (5)
H70.713050.374860.026910.0549*
H80.649600.53925−0.109580.0639*
H90.840850.60287−0.270070.0701*
H141.538580.39588−0.341940.0662*
H151.637000.24125−0.213420.0636*
H161.467170.13990−0.057570.0547*
H190.691310.088710.064960.0519*
H200.431440.122930.168870.0618*
H210.359030.242590.347460.0654*
H220.542510.331450.421420.0647*
H230.802140.300360.317250.0529*
H250.80786−0.056340.254980.0549*
H260.78593−0.213390.414730.0621*
H281.20088−0.148360.461450.0675*
H291.223490.007730.301710.0580*
H1W0.260 (3)0.470 (3)0.588 (3)0.115 (9)*
H2W0.161 (4)0.521 (3)0.507 (3)0.115 (10)*
U11U22U33U12U13U23
F40.0789 (7)0.0849 (8)0.0670 (7)−0.0159 (6)−0.0147 (5)0.0469 (6)
N10.0323 (5)0.0407 (6)0.0329 (5)−0.0076 (4)−0.0042 (4)0.0066 (4)
N30.0338 (5)0.0466 (6)0.0347 (6)−0.0061 (5)−0.0048 (4)0.0066 (5)
N100.0500 (7)0.0548 (7)0.0476 (7)−0.0085 (6)−0.0071 (6)0.0181 (6)
N130.0477 (7)0.0549 (7)0.0423 (7)−0.0139 (6)0.0011 (5)0.0114 (5)
C20.0354 (7)0.0406 (7)0.0339 (6)−0.0068 (5)−0.0064 (5)0.0039 (5)
C40.0339 (6)0.0431 (7)0.0327 (6)−0.0092 (5)−0.0049 (5)0.0032 (5)
C50.0351 (7)0.0405 (7)0.0312 (6)−0.0105 (5)−0.0044 (5)0.0036 (5)
C60.0367 (7)0.0397 (7)0.0351 (7)−0.0090 (5)−0.0071 (5)0.0033 (5)
C70.0391 (7)0.0484 (8)0.0470 (8)−0.0078 (6)−0.0062 (6)0.0098 (6)
C80.0433 (8)0.0537 (9)0.0601 (10)−0.0023 (7)−0.0123 (7)0.0129 (7)
C90.0563 (9)0.0576 (9)0.0580 (10)−0.0043 (7)−0.0143 (7)0.0240 (8)
C110.0428 (7)0.0399 (7)0.0351 (7)−0.0103 (5)−0.0071 (5)0.0056 (5)
C120.0416 (7)0.0430 (7)0.0338 (6)−0.0125 (6)−0.0028 (5)0.0029 (5)
C140.0451 (8)0.0644 (10)0.0483 (8)−0.0177 (7)0.0070 (7)0.0100 (7)
C150.0373 (8)0.0648 (10)0.0515 (9)−0.0111 (7)0.0017 (6)0.0001 (7)
C160.0380 (7)0.0548 (8)0.0419 (7)−0.0089 (6)−0.0046 (6)0.0028 (6)
C170.0359 (7)0.0444 (7)0.0331 (6)−0.0109 (5)−0.0041 (5)0.0004 (5)
C180.0319 (6)0.0381 (6)0.0333 (6)−0.0071 (5)−0.0036 (5)0.0088 (5)
C190.0395 (7)0.0519 (8)0.0383 (7)−0.0120 (6)−0.0064 (5)0.0036 (6)
C200.0367 (7)0.0685 (10)0.0508 (9)−0.0165 (7)−0.0106 (6)0.0108 (7)
C210.0335 (7)0.0713 (10)0.0498 (9)−0.0014 (7)0.0024 (6)0.0092 (7)
C220.0498 (9)0.0608 (9)0.0434 (8)−0.0001 (7)0.0012 (6)−0.0046 (7)
C230.0432 (7)0.0471 (7)0.0413 (7)−0.0075 (6)−0.0076 (6)−0.0007 (6)
C240.0384 (7)0.0398 (7)0.0328 (6)−0.0035 (5)−0.0029 (5)0.0039 (5)
C250.0512 (8)0.0472 (8)0.0424 (7)−0.0147 (6)−0.0150 (6)0.0086 (6)
C260.0563 (9)0.0503 (8)0.0488 (8)−0.0194 (7)−0.0087 (7)0.0118 (7)
C270.0566 (9)0.0513 (8)0.0429 (8)−0.0032 (7)−0.0046 (7)0.0181 (7)
C280.0437 (8)0.0697 (10)0.0507 (9)−0.0003 (7)−0.0105 (7)0.0206 (8)
C290.0350 (7)0.0579 (9)0.0474 (8)−0.0049 (6)−0.0047 (6)0.0143 (7)
O1W0.0730 (9)0.0857 (10)0.0516 (8)−0.0067 (7)−0.0022 (6)0.0075 (6)
F4—C271.358 (2)C18—C191.387 (2)
O1W—H1W0.96 (3)C19—C201.384 (2)
O1W—H2W0.92 (4)C20—C211.384 (2)
N1—C181.4386 (17)C21—C221.378 (2)
N1—C21.3821 (17)C22—C231.384 (2)
N1—C51.3883 (16)C24—C291.396 (2)
N3—C41.3716 (17)C24—C251.392 (2)
N3—C21.3164 (18)C25—C261.383 (2)
N10—C111.3516 (19)C26—C271.371 (2)
N10—C91.322 (2)C27—C281.369 (2)
N13—C121.3524 (19)C28—C291.378 (2)
N13—C141.325 (2)C7—H70.9500
C2—C241.4721 (18)C8—H80.9500
C4—C51.374 (2)C9—H90.9500
C4—C171.4353 (19)C14—H140.9500
C5—C61.4369 (19)C15—H150.9500
C6—C111.4201 (19)C16—H160.9500
C6—C71.407 (2)C19—H190.9500
C7—C81.365 (2)C20—H200.9500
C8—C91.388 (2)C21—H210.9500
C11—C121.465 (2)C22—H220.9500
C12—C171.408 (2)C23—H230.9500
C14—C151.392 (2)C25—H250.9500
C15—C161.367 (2)C26—H260.9500
C16—C171.401 (2)C28—H280.9500
C18—C231.3787 (19)C29—H290.9500
H1W—O1W—H2W102 (3)C18—C23—C22118.99 (14)
C2—N1—C18126.14 (10)C2—C24—C25123.33 (13)
C5—N1—C18127.06 (11)C2—C24—C29117.98 (13)
C2—N1—C5106.32 (11)C25—C24—C29118.63 (13)
C2—N3—C4104.84 (11)C24—C25—C26120.54 (15)
C9—N10—C11117.97 (14)C25—C26—C27118.54 (16)
C12—N13—C14118.04 (13)F4—C27—C26118.50 (15)
N1—C2—N3112.21 (11)C26—C27—C28123.04 (15)
N1—C2—C24125.07 (12)F4—C27—C28118.46 (15)
N3—C2—C24122.72 (12)C27—C28—C29117.95 (15)
N3—C4—C5111.71 (11)C24—C29—C28121.30 (14)
N3—C4—C17126.82 (12)C8—C7—H7120.00
C5—C4—C17121.46 (12)C6—C7—H7120.00
N1—C5—C6131.96 (13)C9—C8—H8121.00
C4—C5—C6123.11 (12)C7—C8—H8121.00
N1—C5—C4104.91 (11)N10—C9—H9118.00
C5—C6—C11116.29 (12)C8—C9—H9118.00
C7—C6—C11117.27 (12)N13—C14—H14118.00
C5—C6—C7126.43 (13)C15—C14—H14118.00
C6—C7—C8119.59 (14)C16—C15—H15121.00
C7—C8—C9118.83 (16)C14—C15—H15121.00
N10—C9—C8124.07 (16)C15—C16—H16121.00
N10—C11—C12116.99 (12)C17—C16—H16121.00
C6—C11—C12120.77 (12)C20—C19—H19121.00
N10—C11—C6122.22 (13)C18—C19—H19121.00
N13—C12—C11117.77 (12)C19—C20—H20120.00
C11—C12—C17120.63 (12)C21—C20—H20120.00
N13—C12—C17121.60 (13)C22—C21—H21120.00
N13—C14—C15123.90 (15)C20—C21—H21120.00
C14—C15—C16118.82 (15)C21—C22—H22120.00
C15—C16—C17118.81 (14)C23—C22—H22120.00
C4—C17—C12117.64 (13)C22—C23—H23121.00
C4—C17—C16123.59 (13)C18—C23—H23121.00
C12—C17—C16118.76 (13)C24—C25—H25120.00
N1—C18—C19119.61 (11)C26—C25—H25120.00
N1—C18—C23118.92 (12)C27—C26—H26121.00
C19—C18—C23121.47 (13)C25—C26—H26121.00
C18—C19—C20118.93 (13)C27—C28—H28121.00
C19—C20—C21119.92 (15)C29—C28—H28121.00
C20—C21—C22120.50 (15)C24—C29—H29119.00
C21—C22—C23120.18 (15)C28—C29—H29119.00
C5—N1—C2—N3−0.42 (15)C5—C6—C7—C8−179.24 (14)
C5—N1—C2—C24−179.84 (12)C11—C6—C7—C81.8 (2)
C18—N1—C2—N3−172.89 (12)C5—C6—C11—N10178.39 (13)
C18—N1—C2—C247.7 (2)C5—C6—C11—C12−2.95 (19)
C2—N1—C5—C40.35 (14)C7—C6—C11—N10−2.6 (2)
C2—N1—C5—C6−178.18 (14)C7—C6—C11—C12176.11 (13)
C18—N1—C5—C4172.74 (12)C6—C7—C8—C90.0 (2)
C18—N1—C5—C6−5.8 (2)C7—C8—C9—N10−1.4 (3)
C2—N1—C18—C19−107.55 (15)N10—C11—C12—N130.22 (19)
C2—N1—C18—C2372.48 (17)N10—C11—C12—C17179.47 (13)
C5—N1—C18—C1981.51 (17)C6—C11—C12—N13−178.51 (13)
C5—N1—C18—C23−98.46 (16)C6—C11—C12—C170.7 (2)
C4—N3—C2—N10.29 (15)N13—C12—C17—C4−179.27 (13)
C4—N3—C2—C24179.73 (12)N13—C12—C17—C161.9 (2)
C2—N3—C4—C5−0.05 (14)C11—C12—C17—C41.5 (2)
C2—N3—C4—C17179.34 (13)C11—C12—C17—C16−177.36 (13)
C11—N10—C9—C80.8 (2)N13—C14—C15—C161.5 (3)
C9—N10—C11—C61.3 (2)C14—C15—C16—C17−2.1 (2)
C9—N10—C11—C12−177.42 (14)C15—C16—C17—C4−178.24 (14)
C14—N13—C12—C11176.69 (13)C15—C16—C17—C120.6 (2)
C14—N13—C12—C17−2.6 (2)N1—C18—C19—C20179.50 (13)
C12—N13—C14—C150.9 (2)C23—C18—C19—C20−0.5 (2)
N1—C2—C24—C2533.4 (2)N1—C18—C23—C22−179.07 (13)
N1—C2—C24—C29−149.58 (14)C19—C18—C23—C221.0 (2)
N3—C2—C24—C25−146.01 (14)C18—C19—C20—C21−0.3 (2)
N3—C2—C24—C2931.05 (19)C19—C20—C21—C220.6 (3)
N3—C4—C5—N1−0.20 (15)C20—C21—C22—C23−0.2 (3)
N3—C4—C5—C6178.50 (12)C21—C22—C23—C18−0.6 (2)
C17—C4—C5—N1−179.62 (12)C2—C24—C25—C26176.81 (13)
C17—C4—C5—C6−0.9 (2)C29—C24—C25—C26−0.2 (2)
N3—C4—C17—C12179.23 (13)C2—C24—C29—C28−177.09 (14)
N3—C4—C17—C16−2.0 (2)C25—C24—C29—C280.1 (2)
C5—C4—C17—C12−1.4 (2)C24—C25—C26—C270.4 (2)
C5—C4—C17—C16177.37 (14)C25—C26—C27—F4178.94 (14)
N1—C5—C6—C72.4 (2)C25—C26—C27—C28−0.5 (2)
N1—C5—C6—C11−178.60 (13)F4—C27—C28—C29−179.07 (15)
C4—C5—C6—C7−175.86 (14)C26—C27—C28—C290.3 (3)
C4—C5—C6—C113.10 (19)C27—C28—C29—C24−0.2 (2)
D—H···AD—HH···AD···AD—H···A
O1W—H1W···N10i0.96 (3)2.62 (3)3.282 (2)127 (2)
O1W—H1W···N13i0.96 (3)1.97 (3)2.902 (2)163 (3)
O1W—H2W···F4ii0.92 (4)2.41 (3)3.159 (2)139 (3)
C9—H9···F4iii0.952.493.248 (2)136
C14—H14···O1Wiv0.952.563.510 (2)176
C19—H19···N3v0.952.613.5209 (19)162
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1W⋯N10i0.96 (3)2.62 (3)3.282 (2)127 (2)
O1W—H1W⋯N13i0.96 (3)1.97 (3)2.902 (2)163 (3)
O1W—H2W⋯F4ii0.92 (4)2.41 (3)3.159 (2)139 (3)
C9—H9⋯F4iii0.952.493.248 (2)136
C14—H14⋯O1Wiv0.952.563.510 (2)176
C19—H19⋯N3v0.952.613.5209 (19)162

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  4 in total

1.  Blue luminescent 2-(2'-pyridyl)benzimidazole derivative ligands and their orange luminescent mononuclear and polynuclear organoplatinum(II) complexes.

Authors:  Qin-De Liu; Wen-Li Jia; Suning Wang
Journal:  Inorg Chem       Date:  2005-03-07       Impact factor: 5.165

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  1,2-Diphenyl-1H-imidazo[4,5-f][1,10]phenanthroline.

Authors:  S Rosepriya; A Thiruvalluvar; J Jayabharathi; M Venkatesh Perumal; R J Butcher; J P Jasinski; J A Golen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-26

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  1 in total

1.  2-(4-Fluoro-phen-yl)-1-(4-methyl-phen-yl)-1H-phenanthro[9,10-d]imidazole.

Authors:  S Rosepriya; A Thiruvalluvar; R Sathishkumar; J Jayabharathi; Sema Oztürk Yildirim; R J Butcher
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-08
  1 in total

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