Literature DB >> 22090989

Diethyl 2-{[(4-meth-oxy-3-pyrid-yl)amino]-methyl-idene}malonate.

Zhi-Fang Zhang1.   

Abstract

In the title mol-ecule, C(14)H(8)N(2)O(5), the amino group is involved in the formation an intra-molecular N-H⋯O hydrogen bond. In the crystal, weak inter-molecular C-H⋯O and C-H⋯N hydrogen bonds link the mol-ecules into ribbons along the b axis.

Entities:  

Year:  2011        PMID: 22090989      PMCID: PMC3212332          DOI: 10.1107/S1600536811026353

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of the synthesis, see: Brown & Dewar (1978 ▶). For related structures, see: Thenmozhi et al. (2009 ▶); Feng et al. (2010 ▶). For potential applications of metal complexes with β-diketone derivatives, see: Nishihama et al. (2001 ▶); Soldatov et al. (2003 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C14H18N2O5 M = 294.30 Monoclinic, a = 19.012 (4) Å b = 8.6620 (17) Å c = 9.1600 (18) Å β = 94.08 (3)° V = 1504.7 (5) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 295 K 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.971, T max = 0.990 2843 measured reflections 2758 independent reflections 1452 reflections with I > 2σ(I) R int = 0.034 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.142 S = 1.01 2758 reflections 190 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.14 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1985 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811026353/cv5129sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811026353/cv5129Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811026353/cv5129Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H18N2O5F(000) = 624
Mr = 294.30Dx = 1.299 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 19.012 (4) Åθ = 10–13°
b = 8.6620 (17) ŵ = 0.10 mm1
c = 9.1600 (18) ÅT = 295 K
β = 94.08 (3)°Block, colourless
V = 1504.7 (5) Å30.30 × 0.20 × 0.10 mm
Z = 4
Enraf–Nonius CAD-4 diffractometer1452 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.034
graphiteθmax = 25.4°, θmin = 1.1°
ω/2θ scansh = −22→0
Absorption correction: ψ scan (North et al., 1968)k = 0→10
Tmin = 0.971, Tmax = 0.990l = −10→11
2843 measured reflections3 standard reflections every 200 reflections
2758 independent reflections intensity decay: 1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.142H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.056P)2] where P = (Fo2 + 2Fc2)/3
2758 reflections(Δ/σ)max < 0.001
190 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.14 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.15081 (10)0.3780 (2)0.5511 (2)0.0649 (6)
C10.11221 (14)0.4906 (3)0.4828 (3)0.0502 (7)
N10.03465 (13)0.7408 (3)0.3671 (3)0.0668 (7)
N20.17585 (11)0.6573 (2)0.6532 (2)0.0527 (6)
H2A0.19160.57420.69540.063*
O20.25551 (12)1.0765 (2)0.7731 (2)0.0826 (8)
C20.06290 (15)0.4714 (3)0.3677 (3)0.0591 (8)
H2B0.05430.37440.32680.071*
O30.31389 (12)0.9837 (2)0.9718 (2)0.0868 (8)
C30.02656 (15)0.5984 (4)0.3142 (3)0.0645 (9)
H3A−0.00620.58400.23500.077*
O40.26443 (12)0.5409 (2)0.8621 (2)0.0804 (7)
C40.08378 (14)0.7576 (3)0.4773 (3)0.0590 (8)
H4A0.09160.85630.51500.071*
O50.34811 (10)0.6944 (2)0.9616 (2)0.0662 (6)
C50.12345 (14)0.6392 (3)0.5386 (3)0.0463 (7)
C60.14403 (17)0.2247 (3)0.4922 (4)0.0776 (10)
H6A0.17400.15580.55030.116*
H6B0.15760.22450.39330.116*
H6C0.09590.19130.49370.116*
C70.20362 (14)0.7889 (3)0.7033 (3)0.0528 (7)
H7A0.18540.87890.66010.063*
C80.25623 (14)0.8065 (3)0.8119 (3)0.0484 (7)
C90.27475 (15)0.9670 (3)0.8476 (3)0.0591 (8)
C100.3349 (2)1.1375 (4)1.0158 (5)0.1076 (14)
H10A0.33931.20150.93010.129*
H10B0.29961.18311.07390.129*
C110.4004 (2)1.1295 (4)1.0990 (5)0.1279 (16)
H11A0.41441.23131.13050.192*
H11B0.43531.08691.03990.192*
H11C0.39581.06491.18290.192*
C120.28810 (15)0.6696 (3)0.8807 (3)0.0526 (7)
C130.38151 (16)0.5613 (3)1.0303 (3)0.0721 (9)
H13A0.40130.49610.95760.087*
H13B0.34750.50141.08040.087*
C140.43854 (18)0.6193 (4)1.1373 (4)0.0959 (12)
H14A0.46210.53331.18550.144*
H14B0.41830.68361.20860.144*
H14C0.47190.67811.08640.144*
U11U22U33U12U13U23
O10.0708 (14)0.0499 (12)0.0701 (13)0.0029 (10)−0.0218 (11)−0.0015 (10)
C10.0463 (16)0.0575 (17)0.0455 (15)0.0011 (14)−0.0067 (13)0.0004 (13)
N10.0626 (17)0.0728 (17)0.0629 (16)0.0032 (14)−0.0106 (13)0.0104 (14)
N20.0607 (15)0.0465 (14)0.0490 (13)0.0003 (12)−0.0088 (11)−0.0020 (11)
O20.1070 (19)0.0537 (13)0.0823 (16)0.0006 (12)−0.0257 (14)0.0033 (11)
C20.0626 (19)0.0608 (19)0.0523 (17)−0.0071 (16)−0.0065 (15)−0.0006 (15)
O30.1061 (18)0.0546 (13)0.0922 (17)−0.0018 (12)−0.0465 (14)−0.0092 (11)
C30.060 (2)0.080 (2)0.0512 (18)−0.0070 (17)−0.0126 (15)0.0049 (16)
O40.0954 (17)0.0519 (13)0.0881 (16)−0.0083 (12)−0.0342 (13)0.0069 (11)
C40.0562 (19)0.0590 (18)0.0601 (18)−0.0002 (15)−0.0084 (15)0.0010 (15)
O50.0625 (13)0.0543 (12)0.0786 (14)−0.0005 (10)−0.0184 (11)0.0023 (10)
C50.0471 (16)0.0533 (17)0.0379 (14)−0.0012 (14)−0.0017 (12)0.0030 (12)
C60.086 (2)0.0476 (19)0.096 (3)0.0027 (17)−0.0172 (19)−0.0094 (17)
C70.0563 (18)0.0485 (17)0.0533 (17)0.0021 (15)0.0018 (14)−0.0020 (14)
C80.0485 (16)0.0480 (16)0.0482 (15)−0.0025 (14)0.0003 (13)−0.0016 (13)
C90.0544 (19)0.059 (2)0.0629 (19)−0.0010 (16)−0.0062 (15)−0.0029 (16)
C100.115 (3)0.055 (2)0.142 (3)−0.004 (2)−0.063 (3)−0.021 (2)
C110.120 (3)0.090 (3)0.164 (4)−0.022 (3)−0.063 (3)−0.002 (3)
C120.0569 (19)0.0520 (18)0.0481 (16)−0.0066 (15)−0.0020 (15)−0.0035 (14)
C130.071 (2)0.069 (2)0.073 (2)0.0150 (18)−0.0134 (18)0.0041 (17)
C140.078 (2)0.110 (3)0.095 (3)0.014 (2)−0.028 (2)0.000 (2)
O1—C11.348 (3)C6—H6A0.9600
O1—C61.436 (3)C6—H6B0.9600
C1—C21.370 (3)C6—H6C0.9600
C1—C51.396 (3)C7—C81.368 (3)
N1—C31.330 (4)C7—H7A0.9300
N1—C41.333 (3)C8—C121.455 (4)
N2—C71.325 (3)C8—C91.465 (4)
N2—C51.404 (3)C10—C111.414 (4)
N2—H2A0.8600C10—H10A0.9700
O2—C91.210 (3)C10—H10B0.9700
C2—C31.371 (4)C11—H11A0.9600
C2—H2B0.9300C11—H11B0.9600
O3—C91.323 (3)C11—H11C0.9600
O3—C101.440 (3)C13—C141.495 (4)
C3—H3A0.9300C13—H13A0.9700
O4—C121.209 (3)C13—H13B0.9700
C4—C51.370 (3)C14—H14A0.9600
C4—H4A0.9300C14—H14B0.9600
O5—C121.333 (3)C14—H14C0.9600
O5—C131.440 (3)
C1—O1—C6117.6 (2)C7—C8—C9114.8 (2)
O1—C1—C2126.1 (3)C12—C8—C9126.2 (2)
O1—C1—C5115.6 (2)O2—C9—O3121.9 (3)
C2—C1—C5118.2 (3)O2—C9—C8124.0 (3)
C3—N1—C4115.7 (3)O3—C9—C8114.1 (3)
C7—N2—C5126.8 (2)C11—C10—O3108.8 (3)
C7—N2—H2A116.6C11—C10—H10A109.9
C5—N2—H2A116.6O3—C10—H10A109.9
C1—C2—C3118.5 (3)C11—C10—H10B109.9
C1—C2—H2B120.7O3—C10—H10B109.9
C3—C2—H2B120.7H10A—C10—H10B108.3
C9—O3—C10118.0 (2)C10—C11—H11A109.5
N1—C3—C2124.9 (3)C10—C11—H11B109.5
N1—C3—H3A117.6H11A—C11—H11B109.5
C2—C3—H3A117.6C10—C11—H11C109.5
N1—C4—C5124.4 (3)H11A—C11—H11C109.5
N1—C4—H4A117.8H11B—C11—H11C109.5
C5—C4—H4A117.8O4—C12—O5121.5 (3)
C12—O5—C13116.6 (2)O4—C12—C8123.4 (3)
C4—C5—C1118.3 (2)O5—C12—C8115.0 (2)
C4—C5—N2124.3 (2)O5—C13—C14107.1 (3)
C1—C5—N2117.3 (2)O5—C13—H13A110.3
O1—C6—H6A109.5C14—C13—H13A110.3
O1—C6—H6B109.5O5—C13—H13B110.3
H6A—C6—H6B109.5C14—C13—H13B110.3
O1—C6—H6C109.5H13A—C13—H13B108.5
H6A—C6—H6C109.5C13—C14—H14A109.5
H6B—C6—H6C109.5C13—C14—H14B109.5
N2—C7—C8126.9 (3)H14A—C14—H14B109.5
N2—C7—H7A116.5C13—C14—H14C109.5
C8—C7—H7A116.5H14A—C14—H14C109.5
C7—C8—C12119.0 (2)H14B—C14—H14C109.5
C6—O1—C1—C25.0 (4)N2—C7—C8—C121.7 (4)
C6—O1—C1—C5−176.5 (2)N2—C7—C8—C9−178.1 (3)
O1—C1—C2—C3177.8 (3)C10—O3—C9—O2−1.4 (5)
C5—C1—C2—C3−0.7 (4)C10—O3—C9—C8179.8 (3)
C4—N1—C3—C22.2 (4)C7—C8—C9—O2−12.7 (4)
C1—C2—C3—N1−1.1 (5)C12—C8—C9—O2167.5 (3)
C3—N1—C4—C5−1.7 (4)C7—C8—C9—O3166.0 (3)
N1—C4—C5—C10.1 (4)C12—C8—C9—O3−13.8 (4)
N1—C4—C5—N2179.1 (3)C9—O3—C10—C11−150.4 (4)
O1—C1—C5—C4−177.5 (2)C13—O5—C12—O4−2.5 (4)
C2—C1—C5—C41.1 (4)C13—O5—C12—C8−179.5 (2)
O1—C1—C5—N23.4 (4)C7—C8—C12—O4−10.7 (4)
C2—C1—C5—N2−177.9 (2)C9—C8—C12—O4169.1 (3)
C7—N2—C5—C4−12.2 (4)C7—C8—C12—O5166.2 (2)
C7—N2—C5—C1166.8 (3)C9—C8—C12—O5−14.0 (4)
C5—N2—C7—C8−177.8 (3)C12—O5—C13—C14−168.9 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O40.862.012.656 (3)131
C6—H6A···O2i0.962.573.462 (4)155
C2—H2B···N1ii0.932.633.389 (3)139
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O40.862.012.656 (3)131
C6—H6A⋯O2i0.962.573.462 (4)155
C2—H2B⋯N1ii0.932.633.389 (3)139

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Diethyl 2-(2-nitro-benzyl-idene)malonate.

Authors:  S Thenmozhi; S Ranjith; A Subbiahpandi; V Dhayalan; A K Mohanakrishnan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-22

3.  Diethyl 2-[(4-bromo-anilino)methyl-idene]malonate.

Authors:  Zhi-Qiang Feng; Xiao-Li Yang; Yuan-Feng Ye; Tao Dong; Huai-Qing Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-10
  3 in total

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