Literature DB >> 22090840

trans-Diaqua-bis-[2,5-bis-(pyridin-2-yl)-1,3,4-thia-diazole]nickel(II) bis-(tetra-fluoridoborate).

Fouad Bentiss, Frédéric Capet, Michel Lagrenée, Mohamed Saadi, Lahcen El Ammari.   

Abstract

The bidentate 1,3,4-thia-diazole ligand, namely, n class="Chemical">2,5-bis-(2-pyrid-yl)-1,3,4-thia-diazole (denoted L), untested as a polydentate ligand, has been found to form the monomeric title complex, [Ni(C(12)H(8)N(4)S)(2)(H(2)O)(2)](BF(4))(2). The complex shows an octa-hedral environment of the nickel cation in which the Ni(2+) ion is located on a center of symmetry, linked to two ligands and two water molecules. In this 1:2 complex (one metal for two organic ligands) each thia-diazole ligand uses one pyridyl and one thia-diazole N atom for chelate binding. In the second pyridyl substituent, the N atom is oriented towards the same direction as the S atom of the 1,3,4-thiadiazole ring. The mean plane of the thia-diazole and pyridyl rings linked to the nickel cation forms a dihedral angle with the other pyridine ring of 18.63 (8)°. The tetra-fluorido-borate ions can be regarded as free anions in the crystal lattice. Nevertheless, they are involved in an infinite two-dimensional network parallel to ([Formula: see text]01) through O-H⋯F hydrogen bonds.

Entities:  

Year:  2011        PMID: 22090840      PMCID: PMC3212138          DOI: 10.1107/S1600536811026420

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For NiII and CuII complexes containing a five n class="Chemical">azide ring, see: Keij et al. (1984 ▶). For background to similar structures, see: Bentiss et al. (2002 ▶, 2004 ▶, 2011 ▶); Zheng et al. (2006 ▶). For an improved synthesis of the ligand, see: Lebrini et al. (2005 ▶).

Experimental

Crystal data

[Ni(C12H8N4S)2(H2O)2](BF4)2 M = 748.93 Monoclinic, a = 10.8164 (15) Å b = 11.0126 (13) Å c = 13.2333 (16) Å β = 101.455 (6)° V = 1544.9 (3) Å3 Z = 2 Mo Kα radiation μ = 0.85 mm−1 T = 100 K 0.26 × 0.21 × 0.13 mm

Data collection

Bruker X8 APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.809, T max = 0.898 28021 measured reflections 3120 independent reflections 2729 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.073 S = 1.05 3120 reflections 214 parameters H-atom parameters constrained Δρmax = 0.60 e Å−3 Δρmin = −0.40 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶) and ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811026420/dn2703sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811026420/dn2703Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C12H8N4S)2(H2O)2](BF4)2F(000) = 756
Mr = 748.93Dx = 1.610 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3120 reflections
a = 10.8164 (15) Åθ = 2.7–26.3°
b = 11.0126 (13) ŵ = 0.85 mm1
c = 13.2333 (16) ÅT = 100 K
β = 101.455 (6)°Prism, colourless
V = 1544.9 (3) Å30.26 × 0.21 × 0.13 mm
Z = 2
Bruker X8 APEXII CCD area-detector diffractometer3120 independent reflections
Radiation source: fine-focus sealed tube2729 reflections with I > 2σ(I)
graphiteRint = 0.035
φ and ω scansθmax = 26.3°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −13→13
Tmin = 0.809, Tmax = 0.898k = −13→13
28021 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.073H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0302P)2 + 1.3259P] where P = (Fo2 + 2Fc2)/3
3120 reflections(Δ/σ)max < 0.001
214 parametersΔρmax = 0.60 e Å3
0 restraintsΔρmin = −0.40 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.
xyzUiso*/Ueq
B10.5722 (2)0.6450 (2)0.25602 (17)0.0236 (4)
F10.67390 (15)0.59474 (18)0.32316 (11)0.0707 (6)
F20.58436 (11)0.62341 (12)0.15219 (9)0.0362 (3)
F30.46260 (14)0.59379 (14)0.27433 (14)0.0583 (4)
F40.56853 (15)0.77036 (12)0.27479 (11)0.0494 (4)
C10.40875 (16)0.75569 (16)−0.02295 (14)0.0202 (4)
C20.47768 (16)1.25248 (17)0.06948 (13)0.0200 (4)
C30.43547 (18)1.35965 (17)0.10676 (14)0.0236 (4)
H30.48061.43330.10480.028*
C40.32542 (18)1.35711 (18)0.14729 (15)0.0258 (4)
H40.29401.42920.17260.031*
C50.26311 (18)1.24770 (18)0.14982 (15)0.0265 (4)
H50.18831.24330.17700.032*
C60.31231 (18)1.14360 (18)0.11167 (15)0.0248 (4)
H60.26961.06860.11440.030*
C70.22180 (17)0.74859 (17)0.04687 (14)0.0210 (4)
C80.10347 (17)0.71642 (18)0.08024 (14)0.0222 (4)
C90.01756 (18)0.80507 (19)0.09554 (16)0.0296 (4)
H90.03350.88870.08590.036*
C10−0.09264 (19)0.7670 (2)0.12544 (17)0.0342 (5)
H10−0.15410.82460.13640.041*
C11−0.11154 (19)0.6445 (2)0.13902 (16)0.0329 (5)
H11−0.18620.61660.15910.040*
C12−0.0195 (2)0.5627 (2)0.12282 (16)0.0310 (5)
H12−0.03260.47870.13340.037*
Ni10.50001.00000.00000.01936 (10)
N10.41765 (14)1.14452 (14)0.07112 (12)0.0218 (3)
N20.38061 (14)0.85992 (14)0.01661 (12)0.0210 (3)
N30.27253 (14)0.85652 (14)0.05732 (12)0.0226 (3)
N40.08724 (15)0.59655 (15)0.09286 (13)0.0260 (4)
O10.61598 (13)0.95553 (13)0.14395 (11)0.0307 (3)
H1W0.68440.99320.16920.037*
H2W0.60900.90070.18860.037*
S10.30384 (4)0.64191 (4)−0.01275 (4)0.02147 (12)
U11U22U33U12U13U23
B10.0194 (10)0.0233 (11)0.0268 (11)0.0023 (8)0.0017 (8)0.0008 (9)
F10.0620 (10)0.1029 (14)0.0388 (8)0.0561 (10)−0.0106 (7)−0.0066 (9)
F20.0351 (7)0.0440 (8)0.0285 (6)−0.0059 (6)0.0039 (5)−0.0035 (6)
F30.0514 (9)0.0459 (9)0.0907 (12)−0.0177 (7)0.0457 (9)−0.0236 (8)
F40.0759 (10)0.0240 (7)0.0503 (8)−0.0093 (7)0.0178 (7)−0.0030 (6)
C10.0189 (9)0.0170 (9)0.0231 (9)−0.0021 (7)0.0004 (7)0.0028 (7)
C20.0188 (9)0.0196 (9)0.0203 (8)−0.0010 (7)0.0005 (7)0.0021 (7)
C30.0248 (10)0.0184 (9)0.0270 (10)−0.0014 (7)0.0034 (8)0.0006 (8)
C40.0283 (10)0.0214 (10)0.0283 (10)0.0025 (8)0.0073 (8)−0.0018 (8)
C50.0248 (10)0.0258 (10)0.0302 (10)−0.0003 (8)0.0090 (8)0.0004 (8)
C60.0243 (9)0.0213 (10)0.0297 (10)−0.0038 (8)0.0078 (8)0.0001 (8)
C70.0197 (9)0.0197 (9)0.0226 (9)0.0002 (7)0.0015 (7)0.0009 (7)
C80.0194 (9)0.0246 (10)0.0218 (9)−0.0032 (8)0.0020 (7)−0.0011 (8)
C90.0247 (10)0.0270 (11)0.0362 (11)0.0009 (8)0.0040 (8)−0.0007 (9)
C100.0246 (10)0.0425 (13)0.0365 (11)0.0058 (9)0.0086 (9)−0.0034 (10)
C110.0244 (10)0.0476 (14)0.0295 (10)−0.0075 (9)0.0116 (8)−0.0016 (10)
C120.0337 (11)0.0290 (11)0.0331 (11)−0.0092 (9)0.0131 (9)0.0009 (9)
Ni10.01766 (17)0.01400 (17)0.02659 (18)−0.00261 (13)0.00479 (13)−0.00057 (13)
N10.0205 (8)0.0182 (8)0.0264 (8)−0.0019 (6)0.0039 (6)0.0009 (6)
N20.0186 (7)0.0179 (8)0.0267 (8)−0.0013 (6)0.0048 (6)0.0000 (6)
N30.0193 (8)0.0208 (8)0.0282 (8)−0.0032 (6)0.0056 (6)0.0012 (7)
N40.0267 (8)0.0233 (9)0.0299 (8)−0.0047 (7)0.0099 (7)−0.0014 (7)
O10.0270 (7)0.0276 (8)0.0337 (8)−0.0075 (6)−0.0030 (6)0.0064 (6)
S10.0188 (2)0.0158 (2)0.0299 (2)−0.00252 (17)0.00479 (18)0.00033 (18)
B1—F31.377 (3)C7—S11.7517 (19)
B1—F11.385 (3)C8—N41.346 (3)
B1—F41.404 (3)C8—C91.390 (3)
B1—F21.426 (2)C9—C101.393 (3)
C1—N21.322 (2)C9—H90.9500
C1—C2i1.482 (2)C10—C111.382 (3)
C1—S11.7137 (18)C10—H100.9500
C2—N11.357 (2)C11—C121.391 (3)
C2—C31.391 (3)C11—H110.9500
C2—C1i1.482 (2)C12—N41.345 (2)
C3—C41.400 (3)C12—H120.9500
C3—H30.9500Ni1—N22.0515 (15)
C4—C51.384 (3)Ni1—N2i2.0515 (15)
C4—H40.9500Ni1—O1i2.1197 (14)
C5—C61.400 (3)Ni1—O12.1197 (14)
C5—H50.9500Ni1—N1i2.1320 (16)
C6—N11.352 (2)Ni1—N12.1320 (16)
C6—H60.9500N2—N31.381 (2)
C7—N31.305 (2)O1—H1W0.8564
C7—C81.478 (2)O1—H2W0.8588
F3—B1—F1108.98 (19)C9—C10—H10120.4
F3—B1—F4108.44 (17)C10—C11—C12118.91 (18)
F1—B1—F4109.02 (18)C10—C11—H11120.5
F3—B1—F2110.41 (17)C12—C11—H11120.5
F1—B1—F2109.73 (17)N4—C12—C11123.3 (2)
F4—B1—F2110.22 (17)N4—C12—H12118.4
N2—C1—C2i119.49 (16)C11—C12—H12118.4
N2—C1—S1113.30 (13)N2—Ni1—N2i180.00 (9)
C2i—C1—S1127.21 (14)N2—Ni1—O1i89.84 (6)
N1—C2—C3123.10 (16)N2i—Ni1—O1i90.16 (6)
N1—C2—C1i113.09 (16)N2—Ni1—O190.16 (6)
C3—C2—C1i123.81 (16)N2i—Ni1—O189.84 (6)
C2—C3—C4118.89 (17)O1i—Ni1—O1180.00 (8)
C2—C3—H3120.6N2—Ni1—N1i79.22 (6)
C4—C3—H3120.6N2i—Ni1—N1i100.78 (6)
C5—C4—C3118.81 (18)O1i—Ni1—N1i90.02 (6)
C5—C4—H4120.6O1—Ni1—N1i89.98 (6)
C3—C4—H4120.6N2—Ni1—N1100.78 (6)
C4—C5—C6118.84 (17)N2i—Ni1—N179.22 (6)
C4—C5—H5120.6O1i—Ni1—N189.98 (6)
C6—C5—H5120.6O1—Ni1—N190.02 (6)
N1—C6—C5123.20 (17)N1i—Ni1—N1180.0
N1—C6—H6118.4C6—N1—C2117.16 (16)
C5—C6—H6118.4C6—N1—Ni1128.93 (13)
N3—C7—C8123.90 (17)C2—N1—Ni1113.82 (12)
N3—C7—S1114.75 (13)C1—N2—N3114.22 (15)
C8—C7—S1121.34 (14)C1—N2—Ni1114.28 (12)
N4—C8—C9124.27 (17)N3—N2—Ni1131.42 (12)
N4—C8—C7114.47 (16)C7—N3—N2110.73 (15)
C9—C8—C7121.26 (17)C12—N4—C8116.68 (17)
C8—C9—C10117.7 (2)Ni1—O1—H1W123.4
C8—C9—H9121.2Ni1—O1—H2W131.6
C10—C9—H9121.2H1W—O1—H2W105.0
C11—C10—C9119.2 (2)C1—S1—C787.00 (9)
C11—C10—H10120.4
N1—C2—C3—C4−0.5 (3)C3—C2—N1—Ni1176.49 (14)
C1i—C2—C3—C4178.72 (17)C1i—C2—N1—Ni1−2.83 (19)
C2—C3—C4—C50.7 (3)C2i—C1—N2—N3179.76 (15)
C3—C4—C5—C6−0.1 (3)S1—C1—N2—N3−0.4 (2)
C4—C5—C6—N1−0.7 (3)C2i—C1—N2—Ni12.7 (2)
N3—C7—C8—N4−160.31 (18)S1—C1—N2—Ni1−177.46 (8)
S1—C7—C8—N420.7 (2)C8—C7—N3—N2−178.38 (16)
N3—C7—C8—C920.3 (3)S1—C7—N3—N20.6 (2)
S1—C7—C8—C9−158.62 (15)C1—N2—N3—C7−0.1 (2)
N4—C8—C9—C10−0.3 (3)Ni1—N2—N3—C7176.26 (13)
C7—C8—C9—C10179.01 (18)C11—C12—N4—C81.1 (3)
C8—C9—C10—C110.3 (3)C9—C8—N4—C12−0.4 (3)
C9—C10—C11—C120.3 (3)C7—C8—N4—C12−179.74 (17)
C10—C11—C12—N4−1.0 (3)N2—C1—S1—C70.63 (14)
C5—C6—N1—C20.9 (3)C2i—C1—S1—C7−179.58 (17)
C5—C6—N1—Ni1−175.27 (14)N3—C7—S1—C1−0.72 (15)
C3—C2—N1—C6−0.2 (3)C8—C7—S1—C1178.31 (16)
C1i—C2—N1—C6−179.56 (16)
D—H···AD—HH···AD···AD—H···A
O1—H1W···F1ii0.861.882.704 (2)160.
O1—H2W···F40.861.942.7880 (19)171.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1W⋯F1i0.861.882.704 (2)160
O1—H2W⋯F40.861.942.7880 (19)171

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  trans-Diaqua-bis-[2,5-bis-(pyridin-2-yl)-1,3,4-thia-diazole]cobalt(II) bis-(tetra-fluoridoborate).

Authors:  Fouad Bentiss; Frédéric Capet; Michel Lagrenée; Mohamed Saadi; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-04
  2 in total
  3 in total

1.  Crystal structure of bis-(azido-κN)bis[2,5-bis(pyridin-2-yl)-1,3,4-thia-diazole-κ(2) N (2),N (3)]cobalt(II).

Authors:  Abdelhakim Laachir; Fouad Bentiss; Salaheddine Guesmi; Mohamed Saadi; Lahcen El Ammari
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-04-09

2.  Crystal structure of bis-(azido-κN)bis-[2,5-bis-(pyridin-2-yl)-1,3,4-thia-diazole-κ(2) N (2),N (3)]nickel(II).

Authors:  Abdelhakim Laachir; Fouad Bentiss; Salaheddine Guesmi; Mohamed Saadi; Lahcen El Ammari
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-01-14

3.  Aqua-bis-[2,5-bis-(pyridin-2-yl)-1,3,4-thia-diazole-κ(2)N(2),N(3)](trifluoro-methane-sulfonato-κO)copper(II) trifluoro-methane-sulfonate.

Authors:  Fouad Bentiss; Moha Outirite; Michel Lagrenée; Mohamed Saadi; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-03
  3 in total

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