Literature DB >> 21836842

trans-Diaqua-bis-[2,5-bis-(pyridin-2-yl)-1,3,4-thia-diazole]cobalt(II) bis-(tetra-fluoridoborate).

Fouad Bentiss, Frédéric Capet, Michel Lagrenée, Mohamed Saadi, Lahcen El Ammari.   

Abstract

The bidentate 1,3,4-thia-diazole ligand substituted by two 2-pyridyl rings (denoted L) has been found to produce the new monomeric title complex, [Co(C(12)H(8)N(4)S)(2)(H(2)O)(2)](BF(4))(2). The thia-diazole and pyridyl rings surrounding the Co atom are almost coplanar [dihedral angle = 4.35 (7)°]. The mean plane defined by these heterocyclic moieties makes a dihedral angle of 18.72 (6)° with the non-coordinated pyridyl ring. The Co(2+) cation, located at a crystallographic center of symmetry, is bonded to two ligands and two water mol-ecules in a trans configuration in an octa-hedral environment. The tetra-fluorido--borate ions can be regarded as free anions in the crystal lattice. Nevertheless, they are involved in an infinite two-dimensional network along the [010] and [101] directions of O-H⋯F hydrogen bonds.

Entities:  

Year:  2011        PMID: 21836842      PMCID: PMC3151744          DOI: 10.1107/S1600536811020125

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to compounds with the same ligand, see: Bentiss et al. (2002 ▶, 2004 ▶); Zheng et al. (2006 ▶). For an improved synthesis of the ligand, see: Lebrini et al. (2005 ▶).

Experimental

Crystal data

[Co(C12H8N4S)2(H2O)2](BF4)2 M = 749.15 Monoclinic, a = 10.8319 (2) Å b = 11.0623 (2) Å c = 13.2120 (3) Å β = 101.114 (1)° V = 1553.45 (5) Å3 Z = 2 Mo Kα radiation μ = 0.77 mm−1 T = 100 K 0.39 × 0.30 × 0.19 mm

Data collection

Bruker X8 APEXII diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.757, T max = 0.863 32328 measured reflections 3055 independent reflections 2877 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.064 S = 1.04 3055 reflections 214 parameters H-atom parameters constrained Δρmax = 0.54 e Å−3 Δρmin = −0.36 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811020125/im2290sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811020125/im2290Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C12H8N4S)2(H2O)2](BF4)2F(000) = 754
Mr = 749.15Dx = 1.602 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3055 reflections
a = 10.8319 (2) Åθ = 2.5–26.0°
b = 11.0623 (2) ŵ = 0.77 mm1
c = 13.2120 (3) ÅT = 100 K
β = 101.114 (1)°Prism, pink
V = 1553.45 (5) Å30.39 × 0.30 × 0.19 mm
Z = 2
Bruker X8 APEXII diffractometer3055 independent reflections
Radiation source: fine-focus sealed tube2877 reflections with I > 2σ(I)
graphiteRint = 0.023
φ and ω scansθmax = 26.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −13→13
Tmin = 0.757, Tmax = 0.863k = −13→13
32328 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.025Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.064H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.028P)2 + 1.2095P] where P = (Fo2 + 2Fc2)/3
3055 reflections(Δ/σ)max = 0.001
214 parametersΔρmax = 0.54 e Å3
0 restraintsΔρmin = −0.36 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.
xyzUiso*/Ueq
B10.57309 (16)0.64485 (16)0.25732 (14)0.0216 (3)
F10.67597 (12)0.59356 (14)0.32121 (9)0.0571 (4)
F20.58207 (9)0.62506 (10)0.15136 (7)0.0332 (2)
F30.46504 (11)0.59451 (11)0.27939 (11)0.0506 (3)
F40.57202 (12)0.76967 (9)0.27725 (9)0.0446 (3)
C10.40758 (13)0.75359 (13)−0.02371 (11)0.0182 (3)
C20.47872 (13)1.25525 (13)0.07062 (11)0.0183 (3)
C30.43647 (14)1.36225 (14)0.10807 (12)0.0217 (3)
H30.48181.43540.10610.026*
C40.32601 (15)1.36036 (14)0.14872 (12)0.0247 (3)
H40.29481.43230.17400.030*
C50.26323 (15)1.25161 (14)0.15134 (12)0.0245 (3)
H50.18821.24760.17840.029*
C60.31236 (14)1.14767 (14)0.11331 (12)0.0224 (3)
H60.26951.07320.11610.027*
C70.22011 (13)0.74718 (13)0.04650 (11)0.0196 (3)
C80.10139 (14)0.71559 (14)0.07978 (11)0.0206 (3)
C90.01592 (15)0.80486 (16)0.09485 (13)0.0278 (3)
H90.03260.88800.08540.033*
C10−0.09485 (16)0.76752 (18)0.12427 (14)0.0327 (4)
H10−0.15600.82530.13490.039*
C11−0.11496 (16)0.64530 (17)0.13791 (13)0.0317 (4)
H11−0.18990.61800.15780.038*
C12−0.02334 (16)0.56355 (16)0.12188 (13)0.0295 (4)
H12−0.03720.48000.13220.035*
Co10.50001.00000.00000.01779 (9)
N10.41821 (12)1.14819 (11)0.07273 (10)0.0196 (3)
N20.37922 (11)0.85730 (11)0.01641 (10)0.0195 (3)
N30.27082 (12)0.85445 (11)0.05733 (10)0.0210 (3)
N40.08401 (12)0.59657 (12)0.09253 (10)0.0243 (3)
O10.61489 (10)0.95481 (10)0.14452 (9)0.0267 (2)
H1W0.68330.99250.16970.032*
H2W0.60790.90000.18920.032*
S10.30230 (3)0.64074 (3)−0.01342 (3)0.01990 (10)
U11U22U33U12U13U23
B10.0179 (8)0.0198 (8)0.0261 (9)0.0022 (6)0.0013 (7)0.0020 (7)
F10.0467 (7)0.0832 (10)0.0362 (6)0.0401 (7)−0.0049 (5)0.0013 (6)
F20.0322 (5)0.0381 (6)0.0277 (5)−0.0042 (4)0.0018 (4)−0.0023 (4)
F30.0409 (6)0.0405 (7)0.0801 (9)−0.0129 (5)0.0361 (6)−0.0168 (6)
F40.0673 (8)0.0217 (5)0.0455 (6)−0.0078 (5)0.0126 (6)−0.0022 (5)
C10.0168 (7)0.0148 (7)0.0213 (7)−0.0023 (5)−0.0009 (5)0.0027 (5)
C20.0170 (7)0.0176 (7)0.0185 (7)−0.0009 (5)−0.0012 (5)0.0018 (5)
C30.0230 (8)0.0164 (7)0.0250 (8)−0.0022 (6)0.0024 (6)0.0006 (6)
C40.0273 (8)0.0204 (8)0.0270 (8)0.0026 (6)0.0070 (6)−0.0017 (6)
C50.0224 (7)0.0252 (8)0.0268 (8)−0.0006 (6)0.0074 (6)0.0007 (6)
C60.0213 (7)0.0198 (7)0.0266 (8)−0.0046 (6)0.0061 (6)0.0006 (6)
C70.0178 (7)0.0185 (7)0.0212 (7)−0.0003 (6)0.0006 (6)0.0010 (6)
C80.0177 (7)0.0232 (8)0.0201 (7)−0.0033 (6)0.0018 (5)−0.0013 (6)
C90.0220 (8)0.0259 (8)0.0348 (9)0.0002 (6)0.0032 (7)−0.0001 (7)
C100.0219 (8)0.0428 (10)0.0341 (9)0.0051 (7)0.0074 (7)−0.0038 (8)
C110.0226 (8)0.0463 (11)0.0284 (9)−0.0080 (7)0.0103 (7)−0.0017 (8)
C120.0305 (9)0.0300 (9)0.0302 (8)−0.0106 (7)0.0114 (7)−0.0016 (7)
Co10.01571 (14)0.01254 (14)0.02481 (16)−0.00254 (10)0.00315 (11)−0.00077 (10)
N10.0184 (6)0.0159 (6)0.0235 (6)−0.0018 (5)0.0017 (5)0.0012 (5)
N20.0166 (6)0.0164 (6)0.0253 (6)−0.0018 (5)0.0033 (5)−0.0002 (5)
N30.0173 (6)0.0194 (6)0.0264 (7)−0.0028 (5)0.0043 (5)0.0004 (5)
N40.0239 (7)0.0229 (7)0.0275 (7)−0.0059 (5)0.0083 (5)−0.0016 (5)
O10.0244 (6)0.0220 (6)0.0306 (6)−0.0050 (4)−0.0027 (5)0.0039 (5)
S10.01719 (18)0.01395 (17)0.0284 (2)−0.00295 (13)0.00399 (14)0.00011 (14)
B1—F31.377 (2)C7—S11.7543 (15)
B1—F11.383 (2)C8—N41.345 (2)
B1—F41.406 (2)C8—C91.394 (2)
B1—F21.439 (2)C9—C101.393 (2)
C1—N21.3245 (19)C9—H90.9500
C1—C2i1.485 (2)C10—C111.387 (3)
C1—S11.7138 (14)C10—H100.9500
C2—N11.3565 (19)C11—C121.389 (3)
C2—C31.394 (2)C11—H110.9500
C2—C1i1.485 (2)C12—N41.345 (2)
C3—C41.403 (2)C12—H120.9500
C3—H30.9500Co1—N22.0880 (12)
C4—C51.386 (2)Co1—N2i2.0880 (12)
C4—H40.9500Co1—O1i2.1280 (11)
C5—C61.400 (2)Co1—O12.1280 (11)
C5—H50.9500Co1—N1i2.1734 (13)
C6—N11.356 (2)Co1—N12.1734 (13)
C6—H60.9500N2—N31.3845 (17)
C7—N31.3039 (19)O1—H1W0.8597
C7—C81.479 (2)O1—H2W0.8597
F3—B1—F1108.81 (15)C9—C10—H10120.3
F3—B1—F4108.63 (14)C10—C11—C12118.70 (15)
F1—B1—F4108.86 (14)C10—C11—H11120.6
F3—B1—F2111.36 (14)C12—C11—H11120.6
F1—B1—F2109.49 (13)N4—C12—C11123.37 (16)
F4—B1—F2109.65 (13)N4—C12—H12118.3
N2—C1—C2i119.94 (13)C11—C12—H12118.3
N2—C1—S1112.95 (11)N2—Co1—N2i180.0
C2i—C1—S1127.10 (11)N2—Co1—O1i90.06 (5)
N1—C2—C3122.76 (13)N2i—Co1—O1i89.94 (5)
N1—C2—C1i113.20 (13)N2—Co1—O189.94 (5)
C3—C2—C1i124.03 (13)N2i—Co1—O190.06 (5)
C2—C3—C4119.07 (14)O1i—Co1—O1180.0
C2—C3—H3120.5N2—Co1—N1i78.03 (5)
C4—C3—H3120.5N2i—Co1—N1i101.97 (5)
C5—C4—C3118.77 (14)O1i—Co1—N1i89.90 (5)
C5—C4—H4120.6O1—Co1—N1i90.10 (5)
C3—C4—H4120.6N2—Co1—N1101.97 (5)
C4—C5—C6118.80 (14)N2i—Co1—N178.03 (5)
C4—C5—H5120.6O1i—Co1—N190.10 (5)
C6—C5—H5120.6O1—Co1—N189.90 (5)
N1—C6—C5123.17 (14)N1i—Co1—N1180.0
N1—C6—H6118.4C6—N1—C2117.42 (13)
C5—C6—H6118.4C6—N1—Co1128.27 (10)
N3—C7—C8123.68 (14)C2—N1—Co1114.19 (10)
N3—C7—S1114.88 (11)C1—N2—N3114.59 (12)
C8—C7—S1121.44 (11)C1—N2—Co1114.52 (10)
N4—C8—C9124.24 (14)N3—N2—Co1130.79 (9)
N4—C8—C7114.78 (13)C7—N3—N2110.42 (12)
C9—C8—C7120.97 (14)C8—N4—C12116.84 (14)
C10—C9—C8117.47 (16)Co1—O1—H1W123.1
C10—C9—H9121.3Co1—O1—H2W131.9
C8—C9—H9121.3H1W—O1—H2W105.0
C11—C10—C9119.38 (16)C1—S1—C787.15 (7)
C11—C10—H10120.3
N1—C2—C3—C4−0.8 (2)O1—Co1—N1—C291.44 (10)
C1i—C2—C3—C4178.56 (14)N1i—Co1—N1—C27.1 (4)
C2—C3—C4—C50.7 (2)C2i—C1—N2—N3179.69 (12)
C3—C4—C5—C60.0 (2)S1—C1—N2—N3−0.59 (16)
C4—C5—C6—N1−0.7 (2)C2i—C1—N2—Co12.91 (17)
N3—C7—C8—N4−160.18 (14)S1—C1—N2—Co1−177.38 (6)
S1—C7—C8—N420.91 (18)N2i—Co1—N2—C1−137 (5)
N3—C7—C8—C920.5 (2)O1i—Co1—N2—C189.03 (11)
S1—C7—C8—C9−158.44 (12)O1—Co1—N2—C1−90.97 (11)
N4—C8—C9—C10−0.5 (2)N1i—Co1—N2—C1−0.85 (10)
C7—C8—C9—C10178.78 (14)N1—Co1—N2—C1179.15 (10)
C8—C9—C10—C110.5 (2)N2i—Co1—N2—N347 (5)
C9—C10—C11—C120.1 (3)O1i—Co1—N2—N3−87.11 (12)
C10—C11—C12—N4−0.8 (3)O1—Co1—N2—N392.89 (12)
C5—C6—N1—C20.7 (2)N1i—Co1—N2—N3−176.99 (13)
C5—C6—N1—Co1−174.93 (11)N1—Co1—N2—N33.01 (13)
C3—C2—N1—C60.0 (2)C8—C7—N3—N2−178.29 (13)
C1i—C2—N1—C6−179.34 (12)S1—C7—N3—N20.69 (16)
C3—C2—N1—Co1176.30 (11)C1—N2—N3—C7−0.07 (18)
C1i—C2—N1—Co1−3.08 (15)Co1—N2—N3—C7176.07 (10)
N2—Co1—N1—C6−2.87 (14)C9—C8—N4—C12−0.1 (2)
N2i—Co1—N1—C6177.13 (14)C7—C8—N4—C12−179.41 (14)
O1i—Co1—N1—C687.21 (13)C11—C12—N4—C80.7 (2)
O1—Co1—N1—C6−92.79 (13)N2—C1—S1—C70.78 (11)
N1i—Co1—N1—C6−177.1 (5)C2i—C1—S1—C7−179.52 (13)
N2—Co1—N1—C2−178.64 (10)N3—C7—S1—C1−0.86 (12)
N2i—Co1—N1—C21.36 (10)C8—C7—S1—C1178.15 (13)
O1i—Co1—N1—C2−88.56 (10)
D—H···AD—HH···AD···AD—H···A
O1—H1W···F1ii0.861.882.7014 (16)161
O1—H2W···F40.861.942.7927 (16)172
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1W⋯F1i0.861.882.7014 (16)161
O1—H2W⋯F40.861.942.7927 (16)172

Symmetry code: (i) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  5 in total

1.  trans-Diaqua-bis-[2,5-bis-(pyridin-2-yl)-1,3,4-thia-diazole]nickel(II) bis-(tetra-fluoridoborate).

Authors:  Fouad Bentiss; Frédéric Capet; Michel Lagrenée; Mohamed Saadi; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-09

2.  Crystal structure of bis-(azido-κN)bis[2,5-bis(pyridin-2-yl)-1,3,4-thia-diazole-κ(2) N (2),N (3)]cobalt(II).

Authors:  Abdelhakim Laachir; Fouad Bentiss; Salaheddine Guesmi; Mohamed Saadi; Lahcen El Ammari
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-04-09

3.  Crystal structure of bis-(azido-κN)bis-[2,5-bis-(pyridin-2-yl)-1,3,4-thia-diazole-κ(2) N (2),N (3)]nickel(II).

Authors:  Abdelhakim Laachir; Fouad Bentiss; Salaheddine Guesmi; Mohamed Saadi; Lahcen El Ammari
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-01-14

4.  Crystal structure of bis-[2,5-bis-(pyridin-2-yl)-1,3,4-thia-diazole-κ(2) N (2),N (3)]bis-(thio-cyanato-κS)copper(II).

Authors:  Abdelhakim Laachir; Fouad Bentiss; Salaheddine Guesmi; Mohamed Saadi; Lahcen El Ammari
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-07-22

5.  Aqua-bis-[2,5-bis-(pyridin-2-yl)-1,3,4-thia-diazole-κ(2)N(2),N(3)](trifluoro-methane-sulfonato-κO)copper(II) trifluoro-methane-sulfonate.

Authors:  Fouad Bentiss; Moha Outirite; Michel Lagrenée; Mohamed Saadi; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-03
  5 in total

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