Literature DB >> 22088043

Communication: regularizing binding energy distributions and thermodynamics of hydration: theory and application to water modeled with classical and ab initio simulations.

Valéry Weber1, Safir Merchant, D Asthagiri.   

Abstract

The high-energy tail of the distribution of solute-solvent interaction energies is poorly characterized for condensed systems, but this tail region is of principal interest in determining the excess free energy of the solute. We introduce external fields centered on the solute to modulate the short-range repulsive interaction between the solute and solvent. This regularizes the binding energy distribution and makes it easy to calculate the free energy of the solute with the field. Together with the work done to apply the field in the presence and absence of the solute, we calculate the excess chemical potential of the solute. We present the formal development of this idea and apply it to study liquid water.
© 2011 American Institute of Physics

Entities:  

Year:  2011        PMID: 22088043     DOI: 10.1063/1.3660205

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  6 in total

1.  Intramolecular Interactions Overcome Hydration to Drive the Collapse Transition of Gly15.

Authors:  D Asthagiri; Deepti Karandur; Dheeraj S Tomar; B Montgomery Pettitt
Journal:  J Phys Chem B       Date:  2017-08-21       Impact factor: 2.991

2.  Deep neural network based quantum simulations and quasichemical theory for accurate modeling of molten salt thermodynamics.

Authors:  Yu Shi; Stephen T Lam; Thomas L Beck
Journal:  Chem Sci       Date:  2022-06-15       Impact factor: 9.969

3.  Solvation free energy of the peptide group: its model dependence and implications for the additive-transfer free-energy model of protein stability.

Authors:  Dheeraj S Tomar; D Asthagiri; Valéry Weber
Journal:  Biophys J       Date:  2013-09-17       Impact factor: 4.033

4.  Importance of Hydrophilic Hydration and Intramolecular Interactions in the Thermodynamics of Helix-Coil Transition and Helix-Helix Assembly in a Deca-Alanine Peptide.

Authors:  Dheeraj S Tomar; Valéry Weber; B Montgomery Pettitt; D Asthagiri
Journal:  J Phys Chem B       Date:  2015-12-22       Impact factor: 2.991

5.  Conditional solvation thermodynamics of isoleucine in model peptides and the limitations of the group-transfer model.

Authors:  Dheeraj S Tomar; Valéry Weber; B Montgomery Pettitt; D Asthagiri
Journal:  J Phys Chem B       Date:  2014-04-03       Impact factor: 2.991

6.  Hydrated Anions: From Clusters to Bulk Solution with Quasi-Chemical Theory.

Authors:  Diego T Gomez; Lawrence R Pratt; Dilipkumar N Asthagiri; Susan B Rempe
Journal:  Acc Chem Res       Date:  2022-07-13       Impact factor: 24.466

  6 in total

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