Literature DB >> 22087656

Recent advances in biomarker discovery in solid organ transplant by proteomics.

Tara K Sigdel1, Minnie M Sarwal.   

Abstract

The identification and clinical use of more sensitive and specific biomarkers in the field of solid organ transplantation is an urgent need in medicine. Solid organ transplantation has seen improvements in the short-term survival of transplanted organs due to recent advancements in immunosuppressive therapy. However, the currently available methods of allograft monitoring are not optimal. Recent advancements in assaying methods for biomolecules such as genes, mRNA and proteins have helped to identify surrogate biomarkers that can be used to monitor the transplanted organ. These high-throughput 'omic' methods can help researchers to significantly speed up the identification and the validation steps, which are crucial factors for biomarker discovery efforts. Still, the progress towards identifying more sensitive and specific biomarkers remains a great deal slower than expected. In this article, we have evaluated the current status of biomarker discovery using proteomics tools in different solid organ transplants in recent years. This article summarizes recent reports and current status, along with the hurdles in efficient biomarker discovery of protein biomarkers using proteomics approaches. Finally, we will touch upon personalized medicine as a future direction for better management of transplanted organs, and provide what we think could be a recipe for success in this field.
© 2011 Expert Reviews Ltd

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Year:  2011        PMID: 22087656      PMCID: PMC3282122          DOI: 10.1586/epr.11.66

Source DB:  PubMed          Journal:  Expert Rev Proteomics        ISSN: 1478-9450            Impact factor:   3.940


  86 in total

1.  Proteomic-based identification of cleaved urinary beta2-microglobulin as a potential marker for acute tubular injury in renal allografts.

Authors:  Stefan Schaub; John A Wilkins; Mihaela Antonovici; Oleg Krokhin; Tracey Weiler; David Rush; Peter Nickerson
Journal:  Am J Transplant       Date:  2005-04       Impact factor: 8.086

2.  Microstructural changes of bile canaliculi in canine liver: the effect of cold ischemia-reperfusion in orthotopic liver transplantation.

Authors:  H Yasui; N Yoshimura; Y Kobayashi; S Ochiai; T Matsuda; T Takamatsu; T Oka
Journal:  Transplant Proc       Date:  1998-11       Impact factor: 1.066

Review 3.  The pharmacogenetics of calcineurin inhibitors: one step closer toward individualized immunosuppression?

Authors:  Dennis A Hesselink; Teun van Gelder; Ron Hn van Schaik
Journal:  Pharmacogenomics       Date:  2005-06       Impact factor: 2.533

4.  Proteomic identification of human neutrophil alpha-defensins in chronic lung allograft rejection.

Authors:  Gary L Nelsestuen; Michael B Martinez; Marshall I Hertz; Kay Savik; Christine H Wendt
Journal:  Proteomics       Date:  2005-04       Impact factor: 3.984

5.  Heat shock protein 27 is associated with freedom from graft vasculopathy after human cardiac transplantation.

Authors:  A I De Souza; R Wait; A G Mitchell; N R Banner; M J Dunn; M L Rose
Journal:  Circ Res       Date:  2005-06-23       Impact factor: 17.367

Review 6.  Management of hyperglycaemia after pancreas transplantation: are new immunosuppressants the answer?

Authors:  Francesca M Egidi
Journal:  Drugs       Date:  2005       Impact factor: 9.546

Review 7.  Towards the application of proteomics in renal disease diagnosis.

Authors:  Bernardo C Vidal; Joseph V Bonventre; Stephen I-Hong Hsu
Journal:  Clin Sci (Lond)       Date:  2005-11       Impact factor: 6.124

8.  Bioinformatic analysis of the urine proteome of acute allograft rejection.

Authors:  Edmond O'Riordan; Tatyana N Orlova; Jianfeng Mei J; Khalid Butt; Praveen M Chander; Shafiq Rahman; Muong Mya; Rena Hu; Jahangir Momin; Elizabeth W Eng; Dierk J Hampel; Bertram Hartman; Matthias Kretzler; Veronica Delaney; Michael S Goligorsky
Journal:  J Am Soc Nephrol       Date:  2004-12       Impact factor: 10.121

9.  Cardiac protein abnormalities in dilated cardiomyopathy detected by two-dimensional polyacrylamide gel electrophoresis.

Authors:  J M Corbett; H J Why; C H Wheeler; P J Richardson; L C Archard; M H Yacoub; M J Dunn
Journal:  Electrophoresis       Date:  1998-08       Impact factor: 3.535

10.  Cytotoxic lymphocyte gene expression in peripheral blood leukocytes correlates with rejecting renal allografts.

Authors:  L M Vasconcellos; A D Schachter; X X Zheng; L H Vasconcellos; M Shapiro; W E Harmon; T B Strom; D Schachter
Journal:  Transplantation       Date:  1998-09-15       Impact factor: 4.939

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  10 in total

Review 1.  Biomarkers for kidney transplant rejection.

Authors:  Denise J Lo; Bruce Kaplan; Allan D Kirk
Journal:  Nat Rev Nephrol       Date:  2014-01-21       Impact factor: 28.314

2.  Thrombospondin-1, Platelet Factor 4, and Galectin-1 Are Associated with Engraftment in Patients with Sickle Cell Disease who Underwent Haploidentical Hematopoietic Stem Cell Transplantation.

Authors:  Ahmad Shaikh; Purevdorj B Olkhanud; Arunakumar Gangaplara; Abdoul Kone; Sajni Patel; Marjan Gucek; Courtney D Fitzhugh
Journal:  Transplant Cell Ther       Date:  2022-02-04

Review 3.  Biomarkers in Transplantation--Proteomics and Metabolomics.

Authors:  Uwe Christians; Jelena Klawitter; Jost Klawitter
Journal:  Ther Drug Monit       Date:  2016-04       Impact factor: 3.681

4.  Optimization for peptide sample preparation for urine peptidomics.

Authors:  Tara K Sigdel; Carrie D Nicora; Szu-Chuan Hsieh; Hong Dai; Wei-Jun Qian; David G Camp; Minnie M Sarwal
Journal:  Clin Proteomics       Date:  2014-02-25       Impact factor: 3.988

5.  A urinary Common Rejection Module (uCRM) score for non-invasive kidney transplant monitoring.

Authors:  Tara K Sigdel; Joshua Y C Yang; Oriol Bestard; Andrew Schroeder; Szu-Chuan Hsieh; Juliane M Liberto; Izabella Damm; Anna C M Geraedts; Minnie M Sarwal
Journal:  PLoS One       Date:  2019-07-31       Impact factor: 3.240

Review 6.  Unlocking the Potential of the Human Microbiome for Identifying Disease Diagnostic Biomarkers.

Authors:  Rima Hajjo; Dima A Sabbah; Abdel Qader Al Bawab
Journal:  Diagnostics (Basel)       Date:  2022-07-19

7.  A Computational Gene Expression Score for Predicting Immune Injury in Renal Allografts.

Authors:  Tara K Sigdel; Oriol Bestard; Tim Q Tran; Szu-Chuan Hsieh; Silke Roedder; Izabella Damm; Flavio Vincenti; Minnie M Sarwal
Journal:  PLoS One       Date:  2015-09-14       Impact factor: 3.240

8.  Assessment of Circulating Protein Signatures for Kidney Transplantation in Pediatric Recipients.

Authors:  Tara K Sigdel; Minnie M Sarwal
Journal:  Front Med (Lausanne)       Date:  2017-06-16

Review 9.  Role of biobanks in transplantation.

Authors:  Z Hanif; N Sufiyan; M Patel; M Z Akhtar
Journal:  Ann Med Surg (Lond)       Date:  2018-03-01

10.  Serum proteomic predicts effectiveness and reveals potential biomarkers for complications in liver transplant patients.

Authors:  Wenjing Wang; Bo Wang; Chang Liu; Jing Yan; Xiaofan Xiong; Xiaofei Wang; Juan Yang; Bo Guo; Chen Huang
Journal:  Aging (Albany NY)       Date:  2020-06-12       Impact factor: 5.682

  10 in total

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