Literature DB >> 22081388

Newly identified genetic variations in common Escherichia coli MG1655 stock cultures.

Peter L Freddolino1, Sasan Amini, Saeed Tavazoie.   

Abstract

We have recently identified seven mutations in commonly used stocks of the sequenced Escherichia coli strain MG1655 which do not appear in the reference sequence. The mutations are likely to cause loss of function of the glpR and crl genes, which may have serious implications for physiological experiments using the affected strains.

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Year:  2011        PMID： 22081388      PMCID： PMC3256642          DOI： 10.1128/JB.06087-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  24 in total

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Authors:  C K Holtman; R Thurlkill; D W Pettigrew
Journal:  J Bacteriol       Date:  2001-02       Impact factor: 3.490

2.  Genomic changes arising in long-term stab cultures of Escherichia coli.

Authors:  D Faure; R Frederick; D Włoch; P Portier; M Blot; J Adams
Journal:  J Bacteriol       Date:  2004-10       Impact factor: 3.490

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Authors:  I D Hiles; M P Gallagher; D J Jamieson; C F Higgins
Journal:  J Mol Biol       Date:  1987-05-05       Impact factor: 5.469

4.  Membrane topology of the integral membrane components, OppB and OppC, of the oligopeptide permease of Salmonella typhimurium.

Authors:  S R Pearce; M L Mimmack; M P Gallagher; U Gileadi; S C Hyde; C F Higgins
Journal:  Mol Microbiol       Date:  1992-01       Impact factor: 3.501

5.  The complete genome sequence of Escherichia coli K-12.

Authors:  F R Blattner; G Plunkett; C A Bloch; N T Perna; V Burland; M Riley; J Collado-Vides; J D Glasner; C K Rode; G F Mayhew; J Gregor; N W Davis; H A Kirkpatrick; M A Goeden; D J Rose; B Mau; Y Shao
Journal:  Science       Date:  1997-09-05       Impact factor: 47.728

6.  Molecular analysis of the gat genes from Escherichia coli and of their roles in galactitol transport and metabolism.

Authors:  B Nobelmann; J W Lengeler
Journal:  J Bacteriol       Date:  1996-12       Impact factor: 3.490

7.  Analysis of mutations affecting the dissmilation of galactitol (dulcitol) in Escherichia coli K 12.

Authors:  J Lengeler
Journal:  Mol Gen Genet       Date:  1977-03-28

8.  Binding specificity of the periplasmic oligopeptide-binding protein from Escherichia coli.

Authors:  C A Guyer; D G Morgan; J V Staros
Journal:  J Bacteriol       Date:  1986-11       Impact factor: 3.490

9.  A novel peptidyl-prolyl cis/trans isomerase from Escherichia coli.

Authors:  J U Rahfeld; A Schierhorn; K Mann; G Fischer
Journal:  FEBS Lett       Date:  1994-04-18       Impact factor: 4.124

10.  Physiological response to membrane protein overexpression in E. coli.

Authors:  Francesca Gubellini; Grégory Verdon; Nathan K Karpowich; Jon D Luff; Grégory Boël; Nils Gauthier; Samuel K Handelman; Sarah E Ades; John F Hunt
Journal:  Mol Cell Proteomics       Date:  2011-06-30       Impact factor: 5.911
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  34 in total

1.  Determinants of spontaneous mutation in the bacterium Escherichia coli as revealed by whole-genome sequencing.

Authors:  Patricia L Foster; Heewook Lee; Ellen Popodi; Jesse P Townes; Haixu Tang
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-12       Impact factor: 11.205

2.  The rpoS gene is predominantly inactivated during laboratory storage and undergoes source-sink evolution in Escherichia coli species.

Authors:  Alexandre Bleibtreu; Olivier Clermont; Pierre Darlu; Jérémy Glodt; Catherine Branger; Bertrand Picard; Erick Denamur
Journal:  J Bacteriol       Date:  2014-09-29       Impact factor: 3.490

3.  Measuring the wall depletion length of nanoconfined DNA.

Authors:  Aditya Bikram Bhandari; Jeffrey G Reifenberger; Hui-Min Chuang; Han Cao; Kevin D Dorfman
Journal:  J Chem Phys       Date:  2018-09-14       Impact factor: 3.488

4.  Complex physiology and compound stress responses during fermentation of alkali-pretreated corn stover hydrolysate by an Escherichia coli ethanologen.

Authors:  Michael S Schwalbach; David H Keating; Mary Tremaine; Wesley D Marner; Yaoping Zhang; William Bothfeld; Alan Higbee; Jeffrey A Grass; Cameron Cotten; Jennifer L Reed; Leonardo da Costa Sousa; Mingjie Jin; Venkatesh Balan; James Ellinger; Bruce Dale; Patricia J Kiley; Robert Landick
Journal:  Appl Environ Microbiol       Date:  2012-03-02       Impact factor: 4.792

Review 5.  Single-Cell Physiology.

Authors:  Sattar Taheri-Araghi; Steven D Brown; John T Sauls; Dustin B McIntosh; Suckjoon Jun
Journal:  Annu Rev Biophys       Date:  2015-02-26       Impact factor: 12.981

6.  Escherichia coli Lrp Regulates One-Third of the Genome via Direct, Cooperative, and Indirect Routes.

Authors:  Grace M Kroner; Michael B Wolfe; Peter L Freddolino
Journal:  J Bacteriol       Date:  2019-01-11       Impact factor: 3.490

7.  A Defective Undecaprenyl Pyrophosphate Synthase Induces Growth and Morphological Defects That Are Suppressed by Mutations in the Isoprenoid Pathway of Escherichia coli.

Authors:  William J MacCain; Suresh Kannan; Dannah Z Jameel; Jerry M Troutman; Kevin D Young
Journal:  J Bacteriol       Date:  2018-08-24       Impact factor: 3.490

8.  Multi-omics Quantification of Species Variation of Escherichia coli Links Molecular Features with Strain Phenotypes.

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Journal:  Cell Syst       Date:  2016-09-22       Impact factor: 10.304

9.  Addition of Escherichia coli K-12 growth observation and gene essentiality data to the EcoCyc database.

Authors:  Amanda Mackie; Suzanne Paley; Ingrid M Keseler; Alexander Shearer; Ian T Paulsen; Peter D Karp
Journal:  J Bacteriol       Date:  2013-12-20       Impact factor: 3.490

10.  A network of regulators promotes dehydration tolerance in Escherichia coli.

Authors:  Annie I Chen; Mark Goulian
Journal:  Environ Microbiol       Date:  2018-03-14       Impact factor: 5.491
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