Literature DB >> 22074444

Extraction of DNA from malaria-infected erythrocytes using isotachophoresis.

Lewis A Marshall1, Crystal M Han, Juan G Santiago.   

Abstract

We demonstrate a technique for purification of nucleic acids from malaria parasites infecting human erythrocytes using isotachophoresis (ITP). We release nucleic acids from malaria-infected erythrocytes by lysing with heat and proteinase K for 10 min and immediately, thereafter, load sample onto a capillary device. We study the effect of temperature on lysis efficiency. We also implement pressure-driven counterflow during ITP extraction to extend focusing time and increase nucleic acid yield. We show that the purified genomic DNA samples are compatible with polymerase chain reaction (PCR) and demonstrate a clinically relevant limit of detection of 0.5 parasites per nanoliter using quantitative PCR.

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Year:  2011        PMID: 22074444     DOI: 10.1021/ac202567j

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  12 in total

1.  Simultaneous RNA purification and size selection using on-chip isotachophoresis with an ionic spacer.

Authors:  Crystal M Han; David Catoe; Sarah A Munro; Ruba Khnouf; Michael P Snyder; Juan G Santiago; Marc L Salit; Can Cenik
Journal:  Lab Chip       Date:  2019-07-22       Impact factor: 6.799

Review 2.  Strategies in Ebola virus disease (EVD) diagnostics at the point of care.

Authors:  Chad T Coarsey; Nwadiuto Esiobu; Ramswamy Narayanan; Mirjana Pavlovic; Hadi Shafiee; Waseem Asghar
Journal:  Crit Rev Microbiol       Date:  2017-04-25       Impact factor: 7.624

3.  Nucleic acid sample preparation from whole blood in a paper microfluidic device using isotachophoresis.

Authors:  Benjamin P Sullivan; Andrew T Bender; Duy N Ngyuen; Jane Yuqian Zhang; Jonathan D Posner
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2020-12-13       Impact factor: 3.205

Review 4.  Isotachophoresis: Theory and Microfluidic Applications.

Authors:  Ashwin Ramachandran; Juan G Santiago
Journal:  Chem Rev       Date:  2022-06-22       Impact factor: 72.087

5.  One-Step Nucleic Acid Purification and Noise-Resistant Polymerase Chain Reaction by Electrokinetic Concentration for Ultralow-Abundance Nucleic Acid Detection.

Authors:  Wei Ouyang; Jongyoon Han
Journal:  Angew Chem Int Ed Engl       Date:  2020-04-30       Impact factor: 15.336

6.  On-chip isotachophoresis for separation of ions and purification of nucleic acids.

Authors:  Giancarlo Garcia-Schwarz; Anita Rogacs; Supreet S Bahga; Juan G Santiago
Journal:  J Vis Exp       Date:  2012-03-02       Impact factor: 1.355

7.  Solar-thermal complex sample processing for nucleic acid based diagnostics in limited resource settings.

Authors:  Abdurrahman Gumus; Syed Ahsan; Belgin Dogan; Li Jiang; Ryan Snodgrass; Andrea Gardner; Zhengda Lu; Kenneth Simpson; David Erickson
Journal:  Biomed Opt Express       Date:  2016-04-22       Impact factor: 3.732

8.  An Alternative Method for Extracting Plasmodium DNA from EDTA Whole Blood for Malaria Diagnosis.

Authors:  Krongkaew Seesui; Kanokwan Imtawil; Phimphakon Chanetmahun; Porntip Laummaunwai; Thidarut Boonmars
Journal:  Korean J Parasitol       Date:  2018-02-28       Impact factor: 1.341

Review 9.  Towards Multiplex Molecular Diagnosis-A Review of Microfluidic Genomics Technologies.

Authors:  Ismail Hussain Kamal Basha; Eric Tatt Wei Ho; Caffiyar Mohamed Yousuff; Nor Hisham Bin Hamid
Journal:  Micromachines (Basel)       Date:  2017-08-30       Impact factor: 2.891

10.  A Simple and Cost-Effective Freeze-Thaw Based Method for Plasmodium DNA Extraction from Dried Blood Spot.

Authors:  Supriya Sharma; Riti Mann; Sandeep Kumar; Neelima Mishra; Bina Srivastava; Neena Valecha; Anupkumar R Anvikar
Journal:  Iran J Parasitol       Date:  2019 Jan-Mar       Impact factor: 1.012

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