Literature DB >> 22072653

Draft genome sequence of the biocontrol bacterium Chromobacterium sp. strain C-61.

Hyun Jung Kim1, Ju Yeon Park, Song Hee Han, Jin Hee Lee, Xiaoqing Rong, Brian B McSpadden Gardener, Seur Kee Park, Young Cheol Kim.   

Abstract

Chromobacterium sp. strain C-61 is a plant-associated bacterium with proven capacities to suppress plant diseases. Here, we report the draft genome sequence and automatic annotation of strain C-61. A comparison of this sequence to the sequenced genome of Chromobacterium violaceum ATCC 12472 indicates the novelty of C-61 and a subset of gene functions that may be related to its biocontrol activities.

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Mesh：

Year:  2011        PMID： 22072653      PMCID： PMC3232892          DOI： 10.1128/JB.06191-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  5 in total

1.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

2.  Cloning and high-level production of a chitinase from Chromobacterium sp. and the role of conserved or nonconserved residues on its catalytic activity.

Authors:  Seur Kee Park; Chi Wook Kim; Hoon Kim; Jae Sung Jung; G E Harman
Journal:  Appl Microbiol Biotechnol       Date:  2007-02-09       Impact factor: 4.813

3.  Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler.

Authors:  Daniel R Zerbino; Gayle K McEwen; Elliott H Margulies; Ewan Birney
Journal:  PLoS One       Date:  2009-12-22       Impact factor: 3.240

4.  The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes.

Authors:  Ross Overbeek; Tadhg Begley; Ralph M Butler; Jomuna V Choudhuri; Han-Yu Chuang; Matthew Cohoon; Valérie de Crécy-Lagard; Naryttza Diaz; Terry Disz; Robert Edwards; Michael Fonstein; Ed D Frank; Svetlana Gerdes; Elizabeth M Glass; Alexander Goesmann; Andrew Hanson; Dirk Iwata-Reuyl; Roy Jensen; Neema Jamshidi; Lutz Krause; Michael Kubal; Niels Larsen; Burkhard Linke; Alice C McHardy; Folker Meyer; Heiko Neuweger; Gary Olsen; Robert Olson; Andrei Osterman; Vasiliy Portnoy; Gordon D Pusch; Dmitry A Rodionov; Christian Rückert; Jason Steiner; Rick Stevens; Ines Thiele; Olga Vassieva; Yuzhen Ye; Olga Zagnitko; Veronika Vonstein
Journal:  Nucleic Acids Res       Date:  2005-10-07       Impact factor: 16.971

5.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  5 in total
  3 in total

1.  Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides.

Authors:  Steven D Brown; Sagar M Utturkar; Dawn M Klingeman; Courtney M Johnson; Stanton L Martin; Miriam L Land; Tse-Yuan S Lu; Christopher W Schadt; Mitchel J Doktycz; Dale A Pelletier
Journal:  J Bacteriol       Date:  2012-11       Impact factor: 3.490

2.  Both extracellular chitinase and a new cyclic lipopeptide, chromobactomycin, contribute to the biocontrol activity of Chromobacterium sp. C61.

Authors:  Hyun Jung Kim; Ho Seong Choi; Si Young Yang; In Seon Kim; Tokutaro Yamaguchi; Jae Kyung Sohng; Seuk Kee Park; Jin-Cheol Kim; Choong Hwan Lee; Brian McSpadden Gardener; Young Cheol Kim
Journal:  Mol Plant Pathol       Date:  2013-09-11       Impact factor: 5.663

3.  Chromobacterium violaceum Pathogenicity: Updates and Insights from Genome Sequencing of Novel Chromobacterium Species.

Authors:  Juliana H Batista; José F da Silva Neto
Journal:  Front Microbiol       Date:  2017-11-10       Impact factor: 5.640
  3 in total

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