Literature DB >> 2207135

Complete nucleotide sequence of the group I RNA bacteriophage fr.

M R Adhin1, A Avots, V Berzin, G P Overbeek, J van Duin.   

Abstract

We report the complete nucleotide sequence of the group I RNA bacteriophage fr. The entire genome consists of 3575 nucleotides, six nucleotides more than the only other sequenced group I representative, MS2. The greatest divergence between these phages occurs in the 5' terminal region of the A gene, while the lysis-replicase gene overlap, the coat gene and the central region of the replicase gene are highly conserved. Overall sequence homology between fr and MS2 is 77%. Here, we present a general comparison between the two phages. In the accompanying paper we use phylogenetic sequence comparison between MS2 and fr to deduce the secondary structure at the 3' untranslated region.

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Year:  1990        PMID: 2207135     DOI: 10.1016/0167-4781(90)90149-v

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  7 in total

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4.  RNA folding kinetics regulates translation of phage MS2 maturation gene.

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5.  Rethinking the evolution of single-stranded RNA (ssRNA) bacteriophages based on genomic sequences and characterizations of two R-plasmid-dependent ssRNA phages, C-1 and Hgal1.

Authors:  Sherin Kannoly; Yongping Shao; Ing-Nang Wang
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6.  Translational control by a long range RNA-RNA interaction; a basepair substitution analysis.

Authors:  J van Himbergen; B van Geffen; J van Duin
Journal:  Nucleic Acids Res       Date:  1993-04-25       Impact factor: 16.971

7.  Secondary structure model of the Mason-Pfizer monkey virus 5' leader sequence: identification of a structural motif common to a variety of retroviruses.

Authors:  G P Harrison; E Hunter; A M Lever
Journal:  J Virol       Date:  1995-04       Impact factor: 5.103

  7 in total

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