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Literature DB >> 21325422

Genome structure of caulobacter phage phiCb5.

Andris Kazaks¹, Tatyana Voronkova, Janis Rumnieks, Andris Dishlers, Kaspars Tars.

Abstract

The complete genome sequence of caulobacter phage phiCb5 has been determined, and four open reading frames (ORFs) have been identified and characterized. As for related phages, the ORFs code for maturation, coat, replicase, and lysis proteins, but unlike other Leviviridae members, the lysis protein gene of phiCb5 entirely overlaps with the replicase in a different reading frame. The lysis protein of phiCb5 is about two times longer than that of the distantly related MS2 phage and presumably contains two transmembrane helices. Analysis of the proposed genome secondary structure revealed a stable 5' stem-loop, similar to other phages, and a substantially shorter 3' untranslated region (UTR) structure with only three stem-loops.

Entities: Gene Species

Mesh：

Substances：
RNA, Viral

Year: 2011 PMID： 21325422 PMCID： PMC3126270 DOI： 10.1128/JVI.02256-10

Source DB: PubMed Journal: J Virol ISSN： 0022-538X Impact factor: 5.103

18 in total

1. A long-range pseudoknot in Qbeta RNA is essential for replication.

Authors: J Klovins; J van Duin
Journal: J Mol Biol Date: 1999-12-10 Impact factor: 5.469

2. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.

Authors: A Krogh; B Larsson; G von Heijne; E L Sonnhammer
Journal: J Mol Biol Date: 2001-01-19 Impact factor: 5.469

3. A protein antibiotic in the phage Qbeta virion: diversity in lysis targets.

Authors: T G Bernhardt; I N Wang; D K Struck; R Young
Journal: Science Date: 2001-06-22 Impact factor: 47.728

4. Nucleotide sequence of a ssRNA phage from Acinetobacter: kinship to coliphages.

Authors: J Klovins; G P Overbeek; S H E van den Worm; H-W Ackermann; J van Duin
Journal: J Gen Virol Date: 2002-06 Impact factor: 3.891

5. The structure of bacteriophage phiCb5 reveals a role of the RNA genome and metal ions in particle stability and assembly.

Authors: Pavel Plevka; Andris Kazaks; Tatyana Voronkova; Svetlana Kotelovica; Andris Dishlers; Lars Liljas; Kaspars Tars
Journal: J Mol Biol Date: 2009-06-23 Impact factor: 5.469

6. Design of artificial short-chained RNA species that are replicated by Q beta replicase.

Authors: H Zamora; R Luce; C K Biebricher
Journal: Biochemistry Date: 1995-01-31 Impact factor: 3.162

7. The readthrough protein A1 is essential for the formation of viable Q beta particles.

Authors: H Hofstetter; H J Monstein; C Weissmann
Journal: Biochim Biophys Acta Date: 1974-12-06

8. Sequence-specific interaction of R17 coat protein with its ribonucleic acid binding site.

Authors: J Carey; V Cameron; P L de Haseth; O C Uhlenbeck
Journal: Biochemistry Date: 1983-05-24 Impact factor: 3.162

9. Observations on the adsorption of Caulobacter bacteriophages containing ribonucleic acid.

Authors: J M Schmidt
Journal: J Gen Microbiol Date: 1966-11

10. The amino terminal half of the MS2-coded lysis protein is dispensable for function: implications for our understanding of coding region overlaps.

Authors: B Berkhout; M H de Smit; R A Spanjaard; T Blom; J van Duin
Journal: EMBO J Date: 1985-12-01 Impact factor: 11.598

11 in total

1. Mutational analysis of the MS2 lysis protein L.

Authors: Karthik R Chamakura; Garrett B Edwards; Ry Young
Journal: Microbiology (Reading) Date: 2017-07-21 Impact factor: 2.777

2. Rethinking the evolution of single-stranded RNA (ssRNA) bacteriophages based on genomic sequences and characterizations of two R-plasmid-dependent ssRNA phages, C-1 and Hgal1.

Authors: Sherin Kannoly; Yongping Shao; Ing-Nang Wang
Journal: J Bacteriol Date: 2012-07-20 Impact factor: 3.490

Genome structure of caulobacter phage phiCb5.

1. A long-range pseudoknot in Qbeta RNA is essential for replication.

2. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.

3. A protein antibiotic in the phage Qbeta virion: diversity in lysis targets.

4. Nucleotide sequence of a ssRNA phage from Acinetobacter: kinship to coliphages.

5. The structure of bacteriophage phiCb5 reveals a role of the RNA genome and metal ions in particle stability and assembly.

6. Design of artificial short-chained RNA species that are replicated by Q beta replicase.

7. The readthrough protein A1 is essential for the formation of viable Q beta particles.

8. Sequence-specific interaction of R17 coat protein with its ribonucleic acid binding site.

9. Observations on the adsorption of Caulobacter bacteriophages containing ribonucleic acid.

10. The amino terminal half of the MS2-coded lysis protein is dispensable for function: implications for our understanding of coding region overlaps.

1. Mutational analysis of the MS2 lysis protein L.

2. Rethinking the evolution of single-stranded RNA (ssRNA) bacteriophages based on genomic sequences and characterizations of two R-plasmid-dependent ssRNA phages, C-1 and Hgal1.

Review 3. Single-gene lysis in the metagenomic era.

Review 4. Phage single-gene lysis: Finding the weak spot in the bacterial cell wall.

5. Characterization of a novel group I F-specific RNA bacteriophage isolated from human stool.

Review 6. Genomics of bacterial and archaeal viruses: dynamics within the prokaryotic virosphere.

7. Structural basis for the adsorption of a single-stranded RNA bacteriophage.

8. Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil.

9. Diversity of pili-specific bacteriophages: genome sequence of IncM plasmid-dependent RNA phage M.

10. Expansion of known ssRNA phage genomes: From tens to over a thousand.