Literature DB >> 22065837

2-(2-Chloro-phen-yl)-3-methyl-5,6-diphenyl-2,3-dihydro-pyrazine.

N Anuradha, S Chitra, A Thiruvalluvar, K Pandiarajan, R J Butcher, J P Jasinski, J A Golen.   

Abstract

In the title mol-ecule, C(23)H(19)ClN(2), the heterocyclic ring adopts a screw-boat conformation, with all substituents equatorial. The benzene ring at position 2 makes dihedral angles of 77.88 (12) and 76.31 (12)° with the phenyl rings at positions 5 and 6, respectively. The dihedral angle between the phenyl rings at positions 5 and 6 is 70.05 (10)°. The Cl atom is disordered over two positions with occupancy factors of 0.946 (5) and 0.054 (5). In the crystal, C-H⋯π inter-actions are found.

Entities:  

Year:  2011        PMID: 22065837      PMCID: PMC3201404          DOI: 10.1107/S1600536811036336

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological properties of heterocyclic ring systems having a dihydro­pyrazine nucleus, see: Sondhi et al. (2005 ▶). For the use of dihydro­pyrazines, with reference to DNA breakage activity, see: Takechi et al. (2011 ▶). For the inhibition of the growth of Escherichia coli, see: Takeda et al. (2005 ▶). For a closely related crystal structure, see: Anuradha et al. (2009 ▶).

Experimental

Crystal data

C23H19ClN2 M = 358.85 Monoclinic, a = 10.5675 (8) Å b = 19.7014 (9) Å c = 10.4207 (7) Å β = 118.479 (9)° V = 1907.0 (3) Å3 Z = 4 Cu Kα radiation μ = 1.82 mm−1 T = 298 K 0.25 × 0.14 × 0.10 mm

Data collection

Oxford Diffraction Xcalibur Eos Gemini diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010 ▶) T min = 0.659, T max = 1.000 22812 measured reflections 3831 independent reflections 3092 reflections with I > 2σ(I) R int = 0.052

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.150 S = 1.04 3831 reflections 240 parameters 2 restraints H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.28 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED (Oxford Diffraction, 2010 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811036336/wn2451sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811036336/wn2451Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811036336/wn2451Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H19ClN2F(000) = 752
Mr = 358.85Dx = 1.250 Mg m3
Monoclinic, P21/cMelting point: 417 K
Hall symbol: -P 2ybcCu Kα radiation, λ = 1.54184 Å
a = 10.5675 (8) ÅCell parameters from 5083 reflections
b = 19.7014 (9) Åθ = 4.5–73.5°
c = 10.4207 (7) ŵ = 1.82 mm1
β = 118.479 (9)°T = 298 K
V = 1907.0 (3) Å3Block, pale-yellow
Z = 40.25 × 0.14 × 0.10 mm
Oxford Diffraction Xcalibur Eos Gemini diffractometer3831 independent reflections
Radiation source: Enhance (Cu) X-ray Source3092 reflections with I > 2σ(I)
graphiteRint = 0.052
Detector resolution: 16.1500 pixels mm-1θmax = 73.7°, θmin = 4.5°
ω scansh = −13→12
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010)k = −21→24
Tmin = 0.659, Tmax = 1.000l = −12→12
22812 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.150H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0681P)2 + 0.4958P] where P = (Fo2 + 2Fc2)/3
3831 reflections(Δ/σ)max = 0.001
240 parametersΔρmax = 0.32 e Å3
2 restraintsΔρmin = −0.28 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.To allow for a stable and meaningful refinement of the Cl atoms, the C—Cl bonding distances were restrained to be the same (DFIX 1.76 0.02 C22 Cl1 C22 Cl2 and EADP Cl1 Cl2).
xyzUiso*/UeqOcc. (<1)
Cl10.25340 (11)−0.21842 (8)0.16414 (14)0.1246 (4)0.946 (5)
N10.24840 (17)−0.00156 (8)0.13885 (16)0.0488 (5)
N40.2879 (2)−0.02095 (9)−0.10830 (18)0.0627 (6)
C20.3045 (2)−0.06586 (10)0.1173 (2)0.0556 (6)
C30.3806 (3)−0.05552 (12)0.0291 (3)0.0657 (8)
C50.2014 (2)0.02435 (9)−0.10666 (19)0.0479 (5)
C60.20118 (18)0.04090 (9)0.03284 (18)0.0439 (5)
C210.3972 (2)−0.09884 (10)0.2638 (2)0.0527 (6)
C220.3840 (3)−0.16562 (12)0.2953 (3)0.0698 (7)
C230.4712 (3)−0.19357 (14)0.4313 (3)0.0861 (9)
C240.5737 (3)−0.15478 (14)0.5392 (3)0.0767 (8)
C250.5914 (3)−0.08844 (13)0.5117 (2)0.0664 (7)
C260.5037 (2)−0.06128 (10)0.3758 (2)0.0571 (6)
C310.4413 (3)−0.11844 (14)−0.0028 (3)0.0828 (10)
C510.1010 (2)0.05635 (9)−0.24852 (19)0.0474 (5)
C52−0.0386 (2)0.07317 (11)−0.2826 (2)0.0562 (6)
C53−0.1342 (3)0.09626 (12)−0.4219 (2)0.0664 (7)
C54−0.0896 (3)0.10359 (11)−0.5258 (2)0.0682 (8)
C550.0493 (3)0.08806 (11)−0.4913 (2)0.0650 (8)
C560.1443 (2)0.06438 (10)−0.3546 (2)0.0552 (6)
C610.15526 (19)0.10853 (9)0.05924 (18)0.0441 (5)
C620.0827 (2)0.11347 (9)0.14084 (19)0.0478 (5)
C630.0489 (2)0.17630 (11)0.1757 (2)0.0568 (6)
C640.0894 (3)0.23491 (10)0.1328 (2)0.0619 (7)
C650.1610 (3)0.23089 (10)0.0524 (2)0.0638 (7)
C660.1926 (2)0.16820 (10)0.0139 (2)0.0563 (6)
Cl20.249 (2)−0.1906 (15)0.131 (2)0.1246 (4)0.054 (5)
H20.22221−0.095850.061660.0668*
H30.46199−0.025200.085540.0789*
H230.45990−0.238830.449090.1033*
H240.63129−0.173280.631140.0921*
H250.66209−0.061900.584230.0797*
H260.51645−0.016130.358540.0686*
H31A0.36507−0.15035−0.054900.1243*
H31B0.51148−0.138400.087240.1243*
H31C0.48607−0.10673−0.061190.1243*
H52−0.068640.06904−0.212300.0674*
H53−0.228460.10679−0.445000.0797*
H54−0.153600.11902−0.618850.0818*
H550.079760.09357−0.561000.0780*
H560.238100.05365−0.332810.0662*
H620.056800.074200.172130.0574*
H63−0.001470.178970.228400.0682*
H640.068320.277040.158260.0743*
H650.188480.270430.023480.0765*
H660.239010.16601−0.042630.0676*
U11U22U33U12U13U23
Cl10.1170 (7)0.0679 (8)0.1060 (7)−0.0285 (5)−0.0141 (5)0.0118 (5)
N10.0561 (9)0.0475 (8)0.0414 (7)0.0091 (7)0.0221 (7)0.0047 (6)
N40.0780 (12)0.0660 (11)0.0473 (9)0.0211 (9)0.0324 (9)0.0053 (8)
C20.0608 (11)0.0550 (11)0.0456 (10)0.0144 (9)0.0209 (9)0.0056 (8)
C30.0808 (14)0.0633 (13)0.0593 (12)0.0228 (11)0.0384 (11)0.0090 (9)
C50.0557 (10)0.0474 (9)0.0414 (9)0.0020 (8)0.0239 (8)0.0012 (7)
C60.0445 (8)0.0467 (9)0.0393 (8)0.0013 (7)0.0189 (7)0.0023 (7)
C210.0556 (10)0.0504 (10)0.0464 (10)0.0127 (8)0.0198 (8)0.0053 (8)
C220.0627 (12)0.0561 (12)0.0651 (13)0.0016 (10)0.0098 (10)0.0082 (10)
C230.0831 (17)0.0629 (14)0.0829 (17)0.0048 (12)0.0158 (14)0.0281 (13)
C240.0715 (14)0.0817 (16)0.0546 (12)0.0177 (12)0.0120 (11)0.0200 (11)
C250.0633 (12)0.0718 (14)0.0496 (11)0.0085 (10)0.0151 (10)−0.0023 (9)
C260.0647 (12)0.0514 (10)0.0512 (10)0.0083 (9)0.0243 (9)0.0015 (8)
C310.0993 (19)0.0769 (16)0.0746 (16)0.0360 (14)0.0434 (15)0.0067 (12)
C510.0601 (10)0.0442 (9)0.0375 (8)−0.0005 (8)0.0229 (8)0.0002 (7)
C520.0614 (11)0.0619 (12)0.0456 (10)0.0028 (9)0.0258 (9)0.0055 (8)
C530.0621 (12)0.0698 (14)0.0523 (11)0.0071 (10)0.0151 (10)0.0049 (10)
C540.0925 (17)0.0563 (12)0.0389 (10)0.0054 (11)0.0177 (10)0.0057 (8)
C550.1014 (18)0.0541 (11)0.0450 (10)0.0006 (11)0.0394 (11)0.0034 (8)
C560.0717 (12)0.0527 (10)0.0476 (10)0.0014 (9)0.0336 (10)0.0007 (8)
C610.0484 (9)0.0446 (9)0.0340 (8)0.0047 (7)0.0153 (7)0.0027 (6)
C620.0521 (10)0.0500 (10)0.0378 (8)0.0048 (8)0.0185 (7)0.0044 (7)
C630.0652 (12)0.0610 (12)0.0418 (9)0.0151 (9)0.0235 (9)0.0022 (8)
C640.0768 (14)0.0473 (10)0.0496 (10)0.0156 (9)0.0204 (10)0.0003 (8)
C650.0806 (14)0.0430 (10)0.0615 (12)0.0031 (9)0.0288 (11)0.0079 (9)
C660.0666 (12)0.0526 (10)0.0526 (10)0.0043 (9)0.0307 (9)0.0085 (8)
Cl20.1170 (7)0.0679 (8)0.1060 (7)−0.0285 (5)−0.0141 (5)0.0118 (5)
Cl1—C221.748 (3)C61—C621.394 (3)
Cl2—C221.70 (2)C62—C631.384 (3)
N1—C61.282 (2)C63—C641.378 (3)
N1—C21.461 (3)C64—C651.373 (4)
N4—C31.462 (3)C65—C661.388 (3)
N4—C51.284 (3)C2—H20.9800
C2—C31.496 (4)C3—H30.9800
C2—C211.512 (3)C23—H230.9300
C3—C311.504 (4)C24—H240.9300
C5—C511.488 (3)C25—H250.9300
C5—C61.491 (3)C26—H260.9300
C6—C611.488 (3)C31—H31A0.9600
C21—C261.387 (3)C31—H31B0.9600
C21—C221.379 (3)C31—H31C0.9600
C22—C231.384 (4)C52—H520.9300
C23—C241.364 (4)C53—H530.9300
C24—C251.370 (4)C54—H540.9300
C25—C261.378 (3)C55—H550.9300
C51—C521.383 (3)C56—H560.9300
C51—C561.392 (3)C62—H620.9300
C52—C531.392 (3)C63—H630.9300
C53—C541.379 (4)C64—H640.9300
C54—C551.369 (5)C65—H650.9300
C55—C561.375 (3)C66—H660.9300
C61—C661.392 (3)
C2—N1—C6116.95 (16)C61—C66—C65120.5 (2)
C3—N4—C5117.38 (19)N1—C2—H2108.00
N1—C2—C3110.66 (17)C3—C2—H2108.00
N1—C2—C21109.42 (15)C21—C2—H2108.00
C3—C2—C21113.6 (2)N4—C3—H3107.00
N4—C3—C2111.1 (2)C2—C3—H3107.00
N4—C3—C31109.0 (2)C31—C3—H3107.00
C2—C3—C31115.8 (2)C22—C23—H23120.00
N4—C5—C6119.82 (16)C24—C23—H23120.00
N4—C5—C51117.16 (17)C23—C24—H24120.00
C6—C5—C51122.98 (18)C25—C24—H24120.00
N1—C6—C5121.10 (17)C24—C25—H25120.00
N1—C6—C61116.89 (16)C26—C25—H25120.00
C5—C6—C61121.90 (15)C21—C26—H26119.00
C2—C21—C22124.1 (2)C25—C26—H26119.00
C2—C21—C26119.70 (18)C3—C31—H31A109.00
C22—C21—C26116.25 (19)C3—C31—H31B109.00
Cl1—C22—C21120.9 (2)C3—C31—H31C109.00
Cl1—C22—C23117.1 (2)H31A—C31—H31B109.00
C21—C22—C23122.0 (2)H31A—C31—H31C109.00
Cl2—C22—C2199.7 (10)H31B—C31—H31C109.00
Cl2—C22—C23138.3 (10)C51—C52—H52120.00
C22—C23—C24120.0 (3)C53—C52—H52120.00
C23—C24—C25119.8 (2)C52—C53—H53120.00
C24—C25—C26119.6 (2)C54—C53—H53120.00
C21—C26—C25122.4 (2)C53—C54—H54120.00
C5—C51—C52121.65 (19)C55—C54—H54120.00
C5—C51—C56119.2 (2)C54—C55—H55120.00
C52—C51—C56118.88 (17)C56—C55—H55120.00
C51—C52—C53120.1 (2)C51—C56—H56120.00
C52—C53—C54120.2 (3)C55—C56—H56120.00
C53—C54—C55119.7 (2)C61—C62—H62120.00
C54—C55—C56120.6 (2)C63—C62—H62120.00
C51—C56—C55120.5 (2)C62—C63—H63120.00
C6—C61—C62119.88 (16)C64—C63—H63120.00
C6—C61—C66121.54 (19)C63—C64—H64120.00
C62—C61—C66118.39 (17)C65—C64—H64120.00
C61—C62—C63120.57 (18)C64—C65—H65120.00
C62—C63—C64120.4 (2)C66—C65—H65120.00
C63—C64—C65119.8 (2)C61—C66—H66120.00
C64—C65—C66120.4 (2)C65—C66—H66120.00
C6—N1—C2—C335.9 (3)C2—C21—C22—Cl1−0.7 (4)
C6—N1—C2—C21161.74 (19)C2—C21—C22—C23−179.8 (3)
C2—N1—C6—C51.1 (3)C26—C21—C22—Cl1179.7 (2)
C2—N1—C6—C61−175.12 (18)C26—C21—C22—C230.5 (4)
C5—N4—C3—C235.6 (3)C2—C21—C26—C25179.9 (2)
C5—N4—C3—C31164.2 (2)C22—C21—C26—C25−0.5 (4)
C3—N4—C5—C61.5 (3)Cl1—C22—C23—C24−179.0 (3)
C3—N4—C5—C51−176.3 (2)C21—C22—C23—C240.2 (5)
N1—C2—C3—N4−54.1 (2)C22—C23—C24—C25−1.0 (5)
N1—C2—C3—C31−179.0 (2)C23—C24—C25—C261.1 (5)
C21—C2—C3—N4−177.59 (17)C24—C25—C26—C21−0.3 (4)
C21—C2—C3—C3157.5 (3)C5—C51—C52—C53−173.11 (19)
N1—C2—C21—C22130.8 (3)C56—C51—C52—C531.4 (3)
N1—C2—C21—C26−49.6 (3)C5—C51—C56—C55174.06 (18)
C3—C2—C21—C22−105.1 (3)C52—C51—C56—C55−0.6 (3)
C3—C2—C21—C2674.6 (3)C51—C52—C53—C54−1.1 (3)
N4—C5—C6—N1−22.5 (3)C52—C53—C54—C550.0 (3)
N4—C5—C6—C61153.6 (2)C53—C54—C55—C560.9 (3)
C51—C5—C6—N1155.2 (2)C54—C55—C56—C51−0.6 (3)
C51—C5—C6—C61−28.8 (3)C6—C61—C62—C63175.09 (18)
N4—C5—C51—C52142.8 (2)C66—C61—C62—C630.0 (3)
N4—C5—C51—C56−31.7 (3)C6—C61—C66—C65−173.53 (19)
C6—C5—C51—C52−35.0 (3)C62—C61—C66—C651.5 (3)
C6—C5—C51—C56150.53 (19)C61—C62—C63—C64−1.4 (3)
N1—C6—C61—C62−38.6 (3)C62—C63—C64—C651.4 (3)
N1—C6—C61—C66136.3 (2)C63—C64—C65—C660.1 (3)
C5—C6—C61—C62145.14 (19)C64—C65—C66—C61−1.6 (3)
C5—C6—C61—C66−39.9 (3)
Cg2, Cg3 and Cg4 are the centroids of the C21–C26, C51–C56 and C61–C66 rings, respectively.
D—H···AD—HH···AD···AD—H···A
C24—H24···Cg4i0.932.803.643 (3)152
C53—H53···Cg2ii0.932.993.873 (4)159
C64—H64···Cg3iii0.932.883.729 (2)153
Table 1

Hydrogen-bond geometry (Å, °)

Cg2, Cg3 and Cg4 are the centroids of the C21–C26, C51–C56 and C61–C66 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
C24—H24⋯Cg4i0.932.803.643 (3)152
C53—H53⋯Cg2ii0.932.993.873 (4)159
C64—H64⋯Cg3iii0.932.883.729 (2)153

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  The Role of dihydropyrazines in accelerated death of Escherichia coli on addition of copper(II).

Authors:  Osamu Takeda; Shinji Takechi; Takahiko Katoh; Tadatoshi Yamaguchi
Journal:  Biol Pharm Bull       Date:  2005-07       Impact factor: 2.233

3.  2-Methyl-3,5,6-triphenyl-2,3-dihydro-pyrazine.

Authors:  N Anuradha; A Thiruvalluvar; K Pandiarajan; S Chitra; R J Butcher
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-18

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  1 in total

1.  2-Methyl-3-(4-methyl-phen-yl)-5,6-diphenyl-2,3-dihydro-pyrazine.

Authors:  A Thiruvalluvar; N Anuradha; S Chitra; D Devanathan; R J Butcher
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-06
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.