Literature DB >> 22065830

(E)-N'-(3-Bromo-5-chloro-2-hy-droxy-benzyl-idene)nicotinohydrazide.

M Prabhu, K Parthipan, A Ramu, G Chakkaravarthi, G Rajagopal.   

Abstract

There are two independent mol-ecules in the asymmetric unit of the title compound, C(13)H(9)BrClN(3)O(2), in which the dihedral angles between the benzene and pyridine rings are 8.23 (9)° and 52.84 (12)°. Both the mol-ecules exist in an E configuration with respect to the C=N double bond. The two mol-ecules in the asymmetric unit are linked via weak C-H⋯O hydrogen bonds. In both the mol-ecules, an intra-molecular O-H⋯N hydrogen bond generate an S(6) graph-set motif. In the crystal, inter-molecular N-H⋯O and C-H⋯O hydrogen bonds generate bifurcated R(1) (2)(7) ring motifs. The crystal packing is further stabilized by weak inter-molecular N-H⋯O, N-H⋯N, C-H⋯O and π-π [centroid-centroid distance 3.615 (2) Å] inter-actions.

Entities:  

Year:  2011        PMID: 22065830      PMCID: PMC3201283          DOI: 10.1107/S1600536811038268

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Naveenkumar et al. (2010 ▶); Su et al. (2010 ▶); Tecer et al. (2010 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C13H9BrClN3O2 M = 354.59 Monoclinic, a = 18.2217 (5) Å b = 7.4666 (2) Å c = 23.6916 (5) Å β = 122.685 (1)° V = 2712.93 (12) Å3 Z = 8 Mo Kα radiation μ = 3.23 mm−1 T = 295 K 0.30 × 0.24 × 0.20 mm

Data collection

Bruker APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.444, T max = 0.564 34991 measured reflections 8116 independent reflections 4715 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.125 S = 1.02 8116 reflections 377 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.27 e Å−3 Δρmin = −0.84 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811038268/ng5231sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811038268/ng5231Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811038268/ng5231Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H9BrClN3O2F(000) = 1408
Mr = 354.59Dx = 1.736 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 7402 reflections
a = 18.2217 (5) Åθ = 2.3–27.8°
b = 7.4666 (2) ŵ = 3.23 mm1
c = 23.6916 (5) ÅT = 295 K
β = 122.685 (1)°Block, pale yellow
V = 2712.93 (12) Å30.30 × 0.24 × 0.20 mm
Z = 8
Bruker APEXII diffractometer8116 independent reflections
Radiation source: fine-focus sealed tube4715 reflections with I > 2σ(I)
graphiteRint = 0.042
ω and φ scansθmax = 30.4°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −25→25
Tmin = 0.444, Tmax = 0.564k = −10→10
34991 measured reflectionsl = −31→33
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.125H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0543P)2 + 1.4342P] where P = (Fo2 + 2Fc2)/3
8116 reflections(Δ/σ)max < 0.001
377 parametersΔρmax = 1.27 e Å3
4 restraintsΔρmin = −0.84 e Å3
xyzUiso*/Ueq
Br10.750800 (19)0.43505 (5)0.256817 (14)0.04545 (11)
Br20.92847 (3)0.37571 (8)0.62069 (2)0.08778 (19)
Cl10.97541 (6)0.57738 (16)0.17505 (5)0.0727 (3)
Cl21.13001 (5)0.78996 (14)0.56676 (6)0.0691 (3)
O10.41709 (16)0.7827 (4)−0.01578 (11)0.0622 (7)
O20.62074 (13)0.5694 (3)0.11875 (10)0.0427 (5)
O30.56100 (13)0.6644 (3)0.35290 (10)0.0471 (6)
O40.78596 (14)0.5308 (4)0.49132 (11)0.0498 (6)
N10.31049 (16)1.0700 (4)−0.22503 (12)0.0412 (6)
N20.50665 (16)0.7928 (4)−0.05295 (12)0.0404 (6)
N30.57128 (15)0.7165 (4)0.00520 (11)0.0390 (6)
N40.34447 (16)0.7592 (5)0.16222 (15)0.0613 (9)
N50.65084 (14)0.7503 (4)0.31986 (11)0.0371 (6)
N60.72089 (14)0.7123 (4)0.38238 (11)0.0386 (6)
C10.36031 (18)0.9139 (4)−0.12190 (14)0.0357 (6)
C20.37331 (18)0.9923 (4)−0.16888 (14)0.0367 (6)
H20.42930.9904−0.16070.044*
C30.2310 (2)1.0706 (5)−0.23508 (16)0.0463 (8)
H30.18571.1219−0.27440.056*
C40.2119 (2)1.0005 (5)−0.19115 (17)0.0489 (8)
H40.15551.0062−0.20030.059*
C50.2773 (2)0.9218 (5)−0.13355 (16)0.0454 (8)
H50.26610.8742−0.10260.054*
C60.42963 (19)0.8249 (4)−0.05901 (14)0.0390 (7)
C70.64618 (19)0.6968 (5)0.01529 (14)0.0421 (7)
H70.65680.7285−0.01760.051*
C80.71621 (18)0.6234 (4)0.07931 (14)0.0384 (7)
C90.70035 (18)0.5672 (4)0.12829 (14)0.0348 (6)
C100.77050 (19)0.5086 (4)0.18998 (14)0.0367 (6)
C110.85431 (19)0.5085 (5)0.20395 (15)0.0430 (7)
H110.90050.46950.24540.052*
C120.86859 (19)0.5669 (5)0.15582 (17)0.0482 (8)
C130.8007 (2)0.6208 (5)0.09373 (17)0.0478 (8)
H130.81150.65570.06120.057*
C140.49790 (16)0.7151 (4)0.23663 (13)0.0323 (6)
C150.50623 (19)0.6727 (4)0.18378 (14)0.0389 (7)
H150.56030.64420.19090.047*
C160.4322 (2)0.6739 (5)0.12011 (15)0.0513 (9)
H160.43510.64560.08310.062*
C170.3545 (2)0.7173 (6)0.11241 (17)0.0604 (10)
H170.30500.71760.06910.073*
C180.41587 (18)0.7556 (5)0.22332 (16)0.0476 (8)
H180.41060.78170.25930.057*
C190.57123 (17)0.7085 (4)0.30792 (13)0.0340 (6)
C200.79620 (18)0.7645 (4)0.39838 (15)0.0393 (7)
H200.80300.83570.36930.047*
C210.87182 (18)0.7109 (4)0.46324 (15)0.0390 (7)
C220.86279 (18)0.5946 (4)0.50526 (15)0.0404 (7)
C230.9379 (2)0.5408 (5)0.56524 (15)0.0491 (8)
C241.0189 (2)0.6014 (5)0.58363 (16)0.0510 (9)
H241.06820.56440.62380.061*
C251.02624 (18)0.7172 (5)0.54212 (17)0.0473 (8)
C260.95434 (18)0.7721 (5)0.48211 (16)0.0455 (8)
H260.96080.84960.45430.055*
H2A0.517 (2)0.813 (5)−0.0833 (13)0.054 (10)*
H5A0.655 (2)0.804 (4)0.2895 (12)0.041 (9)*
H2B0.5850 (19)0.618 (5)0.0836 (11)0.063 (12)*
H4A0.7488 (19)0.569 (5)0.4542 (10)0.068 (13)*
U11U22U33U12U13U23
Br10.03930 (17)0.0614 (2)0.03022 (15)−0.00234 (15)0.01524 (12)0.00653 (14)
Br20.0636 (3)0.1316 (5)0.0522 (2)0.0067 (3)0.0208 (2)0.0320 (3)
Cl10.0330 (4)0.1031 (8)0.0796 (7)0.0043 (5)0.0287 (4)0.0239 (6)
Cl20.0245 (4)0.0654 (6)0.0928 (7)−0.0062 (4)0.0157 (4)−0.0170 (5)
O10.0541 (14)0.102 (2)0.0400 (13)0.0159 (14)0.0314 (11)0.0236 (13)
O20.0291 (10)0.0656 (15)0.0317 (11)0.0023 (10)0.0152 (9)0.0069 (11)
O30.0347 (11)0.0793 (17)0.0298 (10)−0.0008 (11)0.0190 (9)0.0019 (11)
O40.0314 (11)0.0760 (18)0.0374 (12)0.0003 (11)0.0155 (10)0.0022 (12)
N10.0359 (13)0.0505 (16)0.0348 (13)0.0051 (12)0.0176 (11)0.0087 (12)
N20.0339 (13)0.0601 (17)0.0249 (12)−0.0015 (12)0.0143 (10)0.0063 (11)
N30.0341 (13)0.0509 (16)0.0251 (11)0.0002 (11)0.0115 (10)0.0051 (11)
N40.0264 (13)0.094 (3)0.0499 (17)0.0097 (15)0.0117 (12)0.0140 (17)
N50.0219 (11)0.0573 (17)0.0272 (12)0.0003 (11)0.0100 (9)0.0064 (11)
N60.0232 (11)0.0540 (16)0.0289 (12)0.0022 (11)0.0077 (9)−0.0003 (11)
C10.0325 (14)0.0427 (18)0.0319 (14)−0.0003 (13)0.0174 (12)−0.0018 (12)
C20.0311 (14)0.0450 (17)0.0352 (15)0.0014 (13)0.0187 (12)0.0030 (13)
C30.0376 (16)0.055 (2)0.0391 (16)0.0046 (15)0.0160 (13)0.0046 (15)
C40.0322 (15)0.065 (2)0.0488 (18)0.0031 (15)0.0212 (14)0.0020 (17)
C50.0376 (16)0.059 (2)0.0467 (18)−0.0010 (15)0.0272 (14)0.0026 (16)
C60.0361 (16)0.050 (2)0.0295 (14)−0.0010 (13)0.0171 (12)0.0006 (13)
C70.0371 (16)0.058 (2)0.0272 (14)−0.0037 (14)0.0148 (12)0.0067 (13)
C80.0325 (15)0.0487 (19)0.0306 (14)−0.0015 (13)0.0149 (12)0.0043 (13)
C90.0294 (13)0.0389 (16)0.0317 (13)−0.0021 (12)0.0135 (11)−0.0004 (12)
C100.0351 (15)0.0404 (17)0.0312 (14)−0.0037 (13)0.0156 (12)0.0011 (12)
C110.0305 (15)0.0516 (19)0.0368 (16)−0.0020 (14)0.0117 (13)0.0049 (14)
C120.0285 (14)0.062 (2)0.0513 (19)−0.0014 (15)0.0196 (14)0.0073 (17)
C130.0375 (16)0.065 (2)0.0461 (18)−0.0016 (15)0.0260 (15)0.0093 (16)
C140.0234 (12)0.0395 (17)0.0308 (14)0.0019 (12)0.0125 (11)0.0050 (12)
C150.0308 (14)0.054 (2)0.0307 (14)−0.0013 (13)0.0161 (12)0.0047 (13)
C160.0460 (19)0.070 (2)0.0288 (15)−0.0042 (17)0.0143 (14)0.0041 (15)
C170.0329 (17)0.087 (3)0.0378 (18)−0.0017 (18)0.0037 (14)0.0145 (18)
C180.0293 (15)0.067 (2)0.0448 (18)0.0084 (15)0.0190 (14)0.0077 (16)
C190.0279 (13)0.0443 (17)0.0304 (14)0.0024 (12)0.0162 (11)−0.0003 (12)
C200.0288 (14)0.0459 (19)0.0368 (15)−0.0010 (13)0.0135 (12)−0.0013 (13)
C210.0248 (13)0.0464 (18)0.0373 (15)0.0014 (13)0.0112 (12)−0.0089 (13)
C220.0283 (14)0.054 (2)0.0342 (15)0.0028 (13)0.0137 (12)−0.0076 (13)
C230.0391 (17)0.065 (2)0.0342 (15)0.0096 (16)0.0142 (13)−0.0013 (15)
C240.0306 (15)0.065 (2)0.0368 (16)0.0095 (15)0.0047 (13)−0.0106 (16)
C250.0209 (13)0.051 (2)0.0547 (19)−0.0005 (13)0.0102 (13)−0.0177 (17)
C260.0285 (14)0.048 (2)0.0509 (19)−0.0029 (14)0.0152 (14)−0.0088 (15)
Br1—C101.885 (3)C5—H50.9300
Br2—C231.876 (4)C7—C81.462 (4)
Cl1—C121.745 (3)C7—H70.9300
Cl2—C251.738 (3)C8—C131.384 (4)
O1—C61.205 (4)C8—C91.403 (4)
O2—C91.342 (3)C9—C101.394 (4)
O2—H2B0.814 (10)C10—C111.377 (4)
O3—C191.222 (3)C11—C121.370 (5)
O4—C221.341 (4)C11—H110.9300
O4—H4A0.818 (10)C12—C131.375 (4)
N1—C21.331 (4)C13—H130.9300
N1—C31.336 (4)C14—C151.377 (4)
N2—C61.353 (4)C14—C181.384 (4)
N2—N31.363 (3)C14—C191.484 (4)
N2—H2A0.853 (10)C15—C161.378 (4)
N3—C71.261 (4)C15—H150.9300
N4—C181.325 (4)C16—C171.366 (5)
N4—C171.325 (5)C16—H160.9300
N5—C191.356 (4)C17—H170.9300
N5—N61.364 (3)C18—H180.9300
N5—H5A0.860 (10)C20—C211.461 (4)
N6—C201.272 (4)C20—H200.9300
C1—C51.385 (4)C21—C261.394 (4)
C1—C21.386 (4)C21—C221.396 (5)
C1—C61.492 (4)C22—C231.398 (4)
C2—H20.9300C23—C241.371 (5)
C3—C41.367 (5)C24—C251.369 (5)
C3—H30.9300C24—H240.9300
C4—C51.368 (5)C25—C261.376 (4)
C4—H40.9300C26—H260.9300
C9—O2—H2B112 (3)C11—C12—C13121.2 (3)
C22—O4—H4A107 (3)C11—C12—Cl1118.9 (2)
C2—N1—C3116.4 (3)C13—C12—Cl1119.9 (3)
C6—N2—N3117.5 (2)C12—C13—C8120.4 (3)
C6—N2—H2A125 (2)C12—C13—H13119.8
N3—N2—H2A117 (2)C8—C13—H13119.8
C7—N3—N2119.8 (2)C15—C14—C18118.6 (3)
C18—N4—C17116.2 (3)C15—C14—C19123.6 (2)
C19—N5—N6116.5 (2)C18—C14—C19117.7 (3)
C19—N5—H5A120 (2)C14—C15—C16118.1 (3)
N6—N5—H5A124 (2)C14—C15—H15121.0
C20—N6—N5119.1 (3)C16—C15—H15121.0
C5—C1—C2117.7 (3)C17—C16—C15118.6 (3)
C5—C1—C6117.6 (3)C17—C16—H16120.7
C2—C1—C6124.8 (3)C15—C16—H16120.7
N1—C2—C1124.0 (3)N4—C17—C16124.6 (3)
N1—C2—H2118.0N4—C17—H17117.7
C1—C2—H2118.0C16—C17—H17117.7
N1—C3—C4124.1 (3)N4—C18—C14123.8 (3)
N1—C3—H3118.0N4—C18—H18118.1
C4—C3—H3118.0C14—C18—H18118.1
C3—C4—C5118.7 (3)O3—C19—N5122.0 (3)
C3—C4—H4120.6O3—C19—C14122.3 (3)
C5—C4—H4120.6N5—C19—C14115.7 (2)
C4—C5—C1119.1 (3)N6—C20—C21118.8 (3)
C4—C5—H5120.4N6—C20—H20120.6
C1—C5—H5120.4C21—C20—H20120.6
O1—C6—N2121.7 (3)C26—C21—C22119.8 (3)
O1—C6—C1121.2 (3)C26—C21—C20119.3 (3)
N2—C6—C1117.1 (2)C22—C21—C20120.9 (3)
N3—C7—C8119.3 (3)O4—C22—C21123.7 (3)
N3—C7—H7120.3O4—C22—C23117.8 (3)
C8—C7—H7120.3C21—C22—C23118.4 (3)
C13—C8—C9119.3 (3)C24—C23—C22121.6 (3)
C13—C8—C7119.5 (3)C24—C23—Br2119.0 (2)
C9—C8—C7121.0 (3)C22—C23—Br2119.4 (3)
O2—C9—C10118.4 (3)C25—C24—C23119.1 (3)
O2—C9—C8122.9 (2)C25—C24—H24120.5
C10—C9—C8118.6 (3)C23—C24—H24120.5
C11—C10—C9121.5 (3)C24—C25—C26121.5 (3)
C11—C10—Br1119.2 (2)C24—C25—Cl2117.8 (2)
C9—C10—Br1119.3 (2)C26—C25—Cl2120.7 (3)
C12—C11—C10119.0 (3)C25—C26—C21119.6 (3)
C12—C11—H11120.5C25—C26—H26120.2
C10—C11—H11120.5C21—C26—H26120.2
C6—N2—N3—C7−174.5 (3)C7—C8—C13—C12174.4 (3)
C19—N5—N6—C20−173.2 (3)C18—C14—C15—C160.4 (5)
C3—N1—C2—C10.2 (5)C19—C14—C15—C16176.2 (3)
C5—C1—C2—N1−1.8 (5)C14—C15—C16—C170.2 (5)
C6—C1—C2—N1179.5 (3)C18—N4—C17—C16−0.8 (6)
C2—N1—C3—C41.3 (5)C15—C16—C17—N40.0 (6)
N1—C3—C4—C5−1.1 (6)C17—N4—C18—C141.4 (6)
C3—C4—C5—C1−0.6 (5)C15—C14—C18—N4−1.3 (5)
C2—C1—C5—C42.0 (5)C19—C14—C18—N4−177.4 (3)
C6—C1—C5—C4−179.2 (3)N6—N5—C19—O310.6 (4)
N3—N2—C6—O1−2.4 (5)N6—N5—C19—C14−167.8 (3)
N3—N2—C6—C1178.0 (3)C15—C14—C19—O3−145.3 (3)
C5—C1—C6—O1−9.7 (5)C18—C14—C19—O330.6 (5)
C2—C1—C6—O1169.1 (3)C15—C14—C19—N533.1 (4)
C5—C1—C6—N2169.9 (3)C18—C14—C19—N5−151.0 (3)
C2—C1—C6—N2−11.3 (5)N5—N6—C20—C21−175.0 (3)
N2—N3—C7—C8176.8 (3)N6—C20—C21—C26−178.0 (3)
N3—C7—C8—C13−172.5 (3)N6—C20—C21—C224.2 (5)
N3—C7—C8—C93.0 (5)C26—C21—C22—O4179.3 (3)
C13—C8—C9—O2178.5 (3)C20—C21—C22—O4−2.9 (5)
C7—C8—C9—O23.0 (5)C26—C21—C22—C23−0.9 (5)
C13—C8—C9—C10−0.6 (5)C20—C21—C22—C23176.9 (3)
C7—C8—C9—C10−176.1 (3)O4—C22—C23—C24−179.3 (3)
O2—C9—C10—C11−177.8 (3)C21—C22—C23—C240.9 (5)
C8—C9—C10—C111.3 (5)O4—C22—C23—Br22.9 (4)
O2—C9—C10—Br10.1 (4)C21—C22—C23—Br2−176.9 (2)
C8—C9—C10—Br1179.3 (2)C22—C23—C24—C25−0.1 (5)
C9—C10—C11—C12−0.2 (5)Br2—C23—C24—C25177.8 (3)
Br1—C10—C11—C12−178.2 (3)C23—C24—C25—C26−0.8 (5)
C10—C11—C12—C13−1.6 (5)C23—C24—C25—Cl2−179.6 (3)
C10—C11—C12—Cl1176.8 (3)C24—C25—C26—C210.9 (5)
C11—C12—C13—C82.4 (6)Cl2—C25—C26—C21179.6 (2)
Cl1—C12—C13—C8−176.0 (3)C22—C21—C26—C250.0 (5)
C9—C8—C13—C12−1.2 (5)C20—C21—C26—C25−177.8 (3)
D—H···AD—HH···AD···AD—H···A
O2—H2B···N30.81 (1)1.89 (3)2.576 (3)142 (4)
O4—H4A···N60.82 (1)1.83 (2)2.569 (3)149 (4)
C15—H15···O20.932.553.286 (4)137
C16—H16···O10.932.413.185 (4)141
N2—H2A···O3i0.85 (1)2.06 (1)2.906 (3)171 (3)
C2—H2···O3i0.932.523.380 (4)153
N5—H5A···N1ii0.86 (1)2.16 (1)3.009 (4)170 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2B⋯N30.81 (1)1.89 (3)2.576 (3)142 (4)
O4—H4A⋯N60.82 (1)1.83 (2)2.569 (3)149 (4)
C15—H15⋯O20.932.553.286 (4)137
C16—H16⋯O10.932.413.185 (4)141
N2—H2A⋯O3i0.85 (1)2.06 (1)2.906 (3)171 (3)
C2—H2⋯O3i0.932.523.380 (4)153
N5—H5A⋯N1ii0.86 (1)2.16 (1)3.009 (4)170 (3)

Symmetry codes: (i) ; (ii) .

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