Literature DB >> 21580418

(E)-N'-(3,5-Dibromo-2-hydroxy-benzyl-idene)nicotinohydrazide.

Yong-Qing Su1, Cong Li, Ping Wang.   

Abstract

In the title Schiff base compound, C(13)H(9)Br(2)N(3)O(2), there is an intra-molecular O-H⋯N hydrogen bond involving the hydroxyl substituent and the adjacent hydrazine N atom. The mol-ecule is almost planar, the dihedral angle between the benzene ring and the pyridine ring being 5.7 (2)°. In the crystal structure, symmetry-related mol-ecules are linked via N-H⋯O hydrogen bonds, forming chains propagating in [001].

Entities:  

Year:  2010        PMID: 21580418      PMCID: PMC2983678          DOI: 10.1107/S1600536810006276

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature on Schiff bases, see: Archibald et al. (1994 ▶); Harada et al. (1999 ▶); Ogawa et al. (1998 ▶). For similar structures, see: Mohd Lair et al. (2009 ▶); Li et al. (2010 ▶); Sun et al. (2009 ▶); Wang et al. (2010 ▶); Wen et al. (2009 ▶).

Experimental

Crystal data

C13H9Br2N3O2 M = 399.05 Monoclinic, a = 17.013 (4) Å b = 8.091 (2) Å c = 10.153 (3) Å β = 92.194 (13)° V = 1396.6 (6) Å3 Z = 4 Mo Kα radiation μ = 5.81 mm−1 T = 298 K 0.23 × 0.21 × 0.20 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.349, T max = 0.390 8024 measured reflections 3023 independent reflections 1933 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.111 S = 1.00 3023 reflections 185 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.64 e Å−3 Δρmin = −0.69 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810006276/su2163sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810006276/su2163Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H9Br2N3O2F(000) = 776
Mr = 399.05Dx = 1.898 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2084 reflections
a = 17.013 (4) Åθ = 2.4–25.2°
b = 8.091 (2) ŵ = 5.81 mm1
c = 10.153 (3) ÅT = 298 K
β = 92.194 (13)°Block, colourless
V = 1396.6 (6) Å30.23 × 0.21 × 0.20 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer3023 independent reflections
Radiation source: fine-focus sealed tube1933 reflections with I > 2σ(I)
graphiteRint = 0.036
ω scansθmax = 27.0°, θmin = 1.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −19→21
Tmin = 0.349, Tmax = 0.390k = −10→10
8024 measured reflectionsl = −12→8
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.111H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0589P)2] where P = (Fo2 + 2Fc2)/3
3023 reflections(Δ/σ)max = 0.001
185 parametersΔρmax = 0.64 e Å3
1 restraintΔρmin = −0.69 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.38611 (2)1.15620 (7)0.38681 (5)0.0731 (2)
Br20.44353 (2)0.85756 (6)0.88313 (4)0.06341 (18)
N10.11733 (17)0.8462 (3)0.5380 (3)0.0393 (7)
N20.04257 (16)0.7852 (4)0.5483 (3)0.0402 (7)
N3−0.16645 (18)0.5160 (4)0.5780 (3)0.0501 (8)
O10.22622 (14)1.0061 (3)0.4163 (2)0.0514 (7)
H10.18200.96960.42700.077*
O20.01730 (14)0.8169 (3)0.3293 (2)0.0508 (7)
C10.2459 (2)0.8814 (4)0.6310 (3)0.0383 (8)
C20.27257 (19)0.9725 (4)0.5231 (3)0.0377 (8)
C30.3494 (2)1.0292 (4)0.5283 (3)0.0437 (9)
C40.4001 (2)0.9964 (4)0.6347 (3)0.0455 (9)
H40.45121.03740.63730.055*
C50.3737 (2)0.9026 (4)0.7363 (3)0.0403 (8)
C60.2980 (2)0.8450 (4)0.7371 (3)0.0430 (9)
H60.28130.78230.80760.052*
C70.1655 (2)0.8224 (4)0.6360 (3)0.0396 (8)
H70.14900.76730.71040.048*
C8−0.00388 (19)0.7712 (4)0.4372 (3)0.0366 (8)
C9−0.08166 (19)0.6936 (4)0.4557 (3)0.0358 (8)
C10−0.1424 (2)0.7215 (5)0.3642 (4)0.0492 (9)
H10−0.13470.78890.29170.059*
C11−0.2145 (2)0.6488 (5)0.3811 (4)0.0541 (11)
H11−0.25610.66660.32070.065*
C12−0.2236 (2)0.5493 (5)0.4894 (4)0.0510 (10)
H12−0.27270.50250.50110.061*
C13−0.0972 (2)0.5869 (4)0.5595 (3)0.0417 (9)
H13−0.05630.56370.62000.050*
H20.024 (2)0.764 (6)0.629 (2)0.080*
U11U22U33U12U13U23
Br10.0414 (3)0.1045 (4)0.0730 (3)−0.0128 (2)−0.0014 (2)0.0354 (3)
Br20.0494 (3)0.0779 (3)0.0609 (3)0.0041 (2)−0.0244 (2)0.0057 (2)
N10.0304 (16)0.0528 (18)0.0347 (16)−0.0058 (13)0.0011 (12)−0.0056 (13)
N20.0285 (16)0.0596 (19)0.0324 (16)−0.0048 (14)−0.0016 (12)−0.0034 (14)
N30.0425 (19)0.057 (2)0.0510 (19)−0.0091 (15)0.0009 (15)0.0027 (15)
O10.0355 (15)0.079 (2)0.0393 (14)−0.0054 (13)−0.0059 (11)0.0100 (13)
O20.0404 (15)0.082 (2)0.0301 (14)−0.0050 (13)−0.0007 (11)0.0079 (13)
C10.0308 (19)0.044 (2)0.040 (2)−0.0013 (15)−0.0025 (15)−0.0067 (16)
C20.0319 (19)0.047 (2)0.0344 (18)0.0030 (15)−0.0022 (14)−0.0012 (16)
C30.035 (2)0.051 (2)0.045 (2)−0.0012 (16)−0.0013 (16)0.0044 (17)
C40.030 (2)0.051 (2)0.055 (2)−0.0002 (17)−0.0051 (17)−0.0015 (19)
C50.036 (2)0.044 (2)0.041 (2)0.0035 (16)−0.0078 (15)−0.0012 (17)
C60.043 (2)0.047 (2)0.039 (2)0.0002 (17)−0.0033 (16)−0.0008 (16)
C70.037 (2)0.044 (2)0.037 (2)−0.0012 (15)−0.0033 (16)−0.0010 (15)
C80.0315 (19)0.043 (2)0.0347 (19)0.0033 (15)−0.0029 (15)−0.0034 (16)
C90.0322 (19)0.043 (2)0.0318 (18)0.0028 (15)−0.0015 (14)−0.0087 (15)
C100.042 (2)0.066 (3)0.038 (2)−0.0023 (19)−0.0067 (17)0.0071 (19)
C110.034 (2)0.077 (3)0.050 (2)0.0003 (19)−0.0100 (17)−0.011 (2)
C120.037 (2)0.056 (2)0.061 (3)−0.0079 (18)0.0017 (18)−0.012 (2)
C130.038 (2)0.047 (2)0.039 (2)−0.0013 (17)−0.0042 (16)0.0019 (16)
Br1—C31.892 (4)C3—C41.382 (4)
Br2—C51.905 (3)C4—C51.370 (5)
N1—C71.278 (4)C4—H40.9300
N1—N21.372 (4)C5—C61.371 (5)
N2—C81.357 (4)C6—H60.9300
N2—H20.901 (10)C7—H70.9300
N3—C121.326 (4)C8—C91.483 (5)
N3—C131.330 (4)C9—C101.381 (5)
O1—C21.344 (4)C9—C131.396 (5)
O1—H10.8200C10—C111.377 (5)
O2—C81.223 (4)C10—H100.9300
C1—C61.401 (5)C11—C121.376 (5)
C1—C21.409 (5)C11—H110.9300
C1—C71.452 (5)C12—H120.9300
C2—C31.384 (5)C13—H130.9300
C7—N1—N2117.1 (3)C1—C6—H6120.3
C8—N2—N1118.6 (3)N1—C7—C1120.0 (3)
C8—N2—H2122 (3)N1—C7—H7120.0
N1—N2—H2119 (3)C1—C7—H7120.0
C12—N3—C13116.5 (3)O2—C8—N2122.5 (3)
C2—O1—H1109.5O2—C8—C9122.4 (3)
C6—C1—C2119.6 (3)N2—C8—C9115.1 (3)
C6—C1—C7118.3 (3)C10—C9—C13116.7 (3)
C2—C1—C7122.1 (3)C10—C9—C8119.6 (3)
O1—C2—C3119.2 (3)C13—C9—C8123.6 (3)
O1—C2—C1122.4 (3)C11—C10—C9119.6 (4)
C3—C2—C1118.4 (3)C11—C10—H10120.2
C4—C3—C2121.7 (3)C9—C10—H10120.2
C4—C3—Br1118.9 (3)C12—C11—C10118.5 (4)
C2—C3—Br1119.4 (3)C12—C11—H11120.8
C5—C4—C3118.9 (3)C10—C11—H11120.8
C5—C4—H4120.6N3—C12—C11124.0 (4)
C3—C4—H4120.6N3—C12—H12118.0
C4—C5—C6121.9 (3)C11—C12—H12118.0
C4—C5—Br2118.9 (3)N3—C13—C9124.6 (3)
C6—C5—Br2119.2 (3)N3—C13—H13117.7
C5—C6—C1119.4 (3)C9—C13—H13117.7
C5—C6—H6120.3
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.821.892.609 (4)146
N2—H2···O2i0.91 (2)2.14 (2)3.017 (4)162 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.821.892.609 (4)146
N2—H2⋯O2i0.91 (2)2.14 (2)3.017 (4)162 (3)

Symmetry code: (i) .

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Authors:  Nooraziah Mohd Lair; Hapipah Mohd Ali; Seik Weng Ng
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5.  N'-(2-Meth-oxy-1-naphthyl-idene)nicotino-hydrazide.

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