Literature DB >> 22065521

(E)-4-{[(3-Propyl-5-sulfanyl-idene-4,5-dihydro-1H-1,2,4-triazol-4-yl)imino]-meth-yl}-3-(p-tol-yl)-1,2,3-oxadiazol-3-ium-5-olate.

Hoong-Kun Fun, Ching Kheng Quah, Balakrishna Kalluraya.   

Abstract

The title compound, C(15)H(16)N(6)O(2)S, exists in a trans configuration with respect to the acyclic N=C bond. The 1,2,3-oxadiazol-3-ium ring makes dihedral angles of 10.59 (8) and 73.94 (8)°, respectively, with the 1,2,4-triazole and benzene rings. The mol-ecular structure is stabilized by an intra-molecular C-H⋯S hydrogen bond, which generates an S(6) ring motif. In the crystal, mol-ecules are linked into inversion dimers by pairs of inter-molecular N-H⋯S hydrogen bonds, generating eight-membered R(2) (2)(8) ring motifs. The dimers are further connected by C-H⋯O hydrogen bonds, forming a sheet parallel to the bc plane. The ethyl group is disordered over two sets of sites with occupancies of 0.744 (7) and 0.256 (7).

Entities:  

Year:  2011        PMID: 22065521      PMCID: PMC3201362          DOI: 10.1107/S1600536811037287

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and applications of sydnone derivatives, see: Baker et al. (1949 ▶); Hedge et al. (2008 ▶); Rai et al. (2008 ▶); Kalluraya et al. (2002 ▶). For standard bond-length data, see: Allen et al. (1987 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶). For a related structure, see: Fun et al. (2011 ▶).

Experimental

Crystal data

C15H16N6O2S M = 344.40 Monoclinic, a = 13.4220 (11) Å b = 6.2411 (5) Å c = 21.1374 (16) Å β = 104.575 (2)° V = 1713.7 (2) Å3 Z = 4 Mo Kα radiation μ = 0.21 mm−1 T = 296 K 0.51 × 0.17 × 0.08 mm

Data collection

Bruker SMART APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.865, T max = 0.983 18912 measured reflections 5003 independent reflections 3637 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.123 S = 1.04 5003 reflections 243 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811037287/is2776sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811037287/is2776Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811037287/is2776Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H16N6O2SF(000) = 720
Mr = 344.40Dx = 1.335 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5356 reflections
a = 13.4220 (11) Åθ = 2.2–27.6°
b = 6.2411 (5) ŵ = 0.21 mm1
c = 21.1374 (16) ÅT = 296 K
β = 104.575 (2)°Needle, colourless
V = 1713.7 (2) Å30.51 × 0.17 × 0.08 mm
Z = 4
Bruker SMART APEXII DUO CCD area-detector diffractometer5003 independent reflections
Radiation source: fine-focus sealed tube3637 reflections with I > 2σ(I)
graphiteRint = 0.030
φ and ω scansθmax = 30.1°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −18→18
Tmin = 0.865, Tmax = 0.983k = −8→8
18912 measured reflectionsl = −29→29
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.123H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0622P)2 + 0.2043P] where P = (Fo2 + 2Fc2)/3
5003 reflections(Δ/σ)max = 0.001
243 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S11.08849 (3)1.22661 (6)0.061779 (16)0.04353 (11)
O11.07417 (9)0.32936 (18)0.22957 (5)0.0546 (3)
O20.90860 (8)0.41866 (18)0.18192 (5)0.0532 (3)
N11.15527 (9)0.59146 (19)0.20345 (5)0.0412 (3)
N21.17089 (11)0.4104 (2)0.23528 (7)0.0560 (3)
N30.93160 (9)0.8734 (2)0.11642 (5)0.0419 (3)
N40.90503 (8)1.05639 (18)0.07899 (5)0.0372 (2)
N50.88806 (10)1.3345 (2)0.01976 (6)0.0487 (3)
N60.78985 (10)1.2811 (2)0.02200 (7)0.0552 (3)
C11.26773 (13)0.9030 (3)0.23096 (9)0.0590 (4)
H1A1.22970.94960.25950.071*
C21.34955 (13)1.0220 (3)0.22159 (10)0.0661 (5)
H2A1.36671.15000.24430.079*
C31.40617 (13)0.9549 (4)0.17941 (9)0.0676 (5)
C41.37997 (16)0.7634 (4)0.14644 (10)0.0825 (7)
H4A1.41840.71550.11820.099*
C51.29812 (14)0.6417 (4)0.15446 (9)0.0684 (5)
H5A1.28040.51420.13160.082*
C61.24376 (11)0.7144 (2)0.19713 (7)0.0443 (3)
C70.99772 (11)0.4668 (2)0.19272 (6)0.0411 (3)
C81.05554 (10)0.6411 (2)0.17668 (6)0.0361 (3)
C91.02620 (10)0.8309 (2)0.13889 (6)0.0386 (3)
H9A1.07620.92260.13080.046*
C100.96113 (10)1.2042 (2)0.05372 (6)0.0373 (3)
C110.80236 (11)1.1116 (3)0.05860 (7)0.0474 (3)
C120.71870 (12)0.9897 (3)0.07693 (11)0.0679 (5)
H12A0.65941.07970.07260.081*0.744 (7)
H12B0.74120.94430.12170.081*0.744 (7)
H12C0.65671.07560.06380.081*0.256 (7)
H12D0.73580.98140.12430.081*0.256 (7)
C13A0.6932 (7)0.7918 (14)0.0331 (4)0.102 (3)0.744 (7)
H13A0.75450.70430.03840.123*0.744 (7)
H13B0.67180.8368−0.01220.123*0.744 (7)
C14A0.6070 (3)0.6572 (8)0.0496 (3)0.164 (3)0.744 (7)
H14A0.60420.51940.02900.245*0.744 (7)
H14B0.54230.72910.03400.245*0.744 (7)
H14C0.62090.63900.09610.245*0.744 (7)
C13B0.6925 (14)0.770 (4)0.0589 (11)0.082 (6)0.256 (7)
H13C0.64740.71090.08390.098*0.256 (7)
H13D0.75380.68140.06580.098*0.256 (7)
C14B0.6399 (10)0.782 (2)−0.0107 (6)0.111 (5)0.256 (7)
H14D0.60680.6475−0.02470.166*0.256 (7)
H14E0.68920.8125−0.03540.166*0.256 (7)
H14F0.58920.8937−0.01750.166*0.256 (7)
C151.49528 (18)1.0890 (5)0.16902 (14)0.1059 (9)
H15A1.49081.23110.18550.159*
H15B1.49211.09580.12320.159*
H15C1.55921.02470.19190.159*
H1N50.8984 (13)1.445 (3)−0.0018 (8)0.053 (5)*
U11U22U33U12U13U23
S10.04646 (19)0.0376 (2)0.04930 (19)−0.00191 (14)0.01724 (14)0.00811 (15)
O10.0733 (7)0.0373 (6)0.0597 (6)0.0047 (5)0.0290 (5)0.0156 (5)
O20.0634 (7)0.0455 (6)0.0582 (6)−0.0161 (5)0.0295 (5)−0.0057 (5)
N10.0470 (6)0.0360 (6)0.0430 (5)0.0075 (5)0.0159 (5)0.0074 (5)
N20.0652 (8)0.0450 (8)0.0605 (7)0.0138 (6)0.0207 (6)0.0192 (6)
N30.0436 (6)0.0370 (6)0.0467 (6)0.0015 (5)0.0143 (5)0.0112 (5)
N40.0403 (5)0.0317 (6)0.0409 (5)0.0015 (4)0.0127 (4)0.0046 (4)
N50.0514 (7)0.0394 (7)0.0548 (7)0.0039 (6)0.0128 (5)0.0145 (6)
N60.0474 (7)0.0497 (8)0.0666 (8)0.0070 (6)0.0108 (6)0.0151 (7)
C10.0542 (8)0.0500 (10)0.0791 (10)0.0052 (7)0.0286 (8)−0.0071 (8)
C20.0557 (9)0.0518 (10)0.0933 (13)−0.0060 (8)0.0234 (9)−0.0122 (10)
C30.0485 (9)0.0806 (14)0.0764 (11)−0.0124 (9)0.0203 (8)−0.0046 (10)
C40.0672 (11)0.1099 (19)0.0830 (12)−0.0267 (12)0.0424 (10)−0.0313 (13)
C50.0622 (10)0.0821 (14)0.0679 (10)−0.0176 (10)0.0293 (8)−0.0269 (10)
C60.0396 (6)0.0440 (8)0.0494 (7)0.0044 (6)0.0115 (5)0.0046 (6)
C70.0599 (8)0.0309 (7)0.0384 (6)−0.0021 (6)0.0234 (5)−0.0015 (5)
C80.0436 (6)0.0301 (6)0.0379 (6)0.0011 (5)0.0161 (5)0.0017 (5)
C90.0425 (6)0.0309 (6)0.0454 (6)−0.0014 (5)0.0167 (5)0.0051 (5)
C100.0480 (7)0.0305 (6)0.0346 (5)0.0000 (5)0.0126 (5)0.0005 (5)
C110.0424 (7)0.0443 (8)0.0555 (8)0.0043 (6)0.0119 (6)0.0050 (7)
C120.0438 (8)0.0637 (12)0.0984 (13)0.0038 (8)0.0222 (8)0.0150 (11)
C13A0.079 (3)0.067 (4)0.172 (8)−0.012 (3)0.054 (5)−0.010 (4)
C14A0.109 (3)0.099 (3)0.316 (8)−0.047 (3)0.115 (4)−0.049 (4)
C13B0.045 (5)0.052 (6)0.137 (15)−0.018 (4)0.004 (7)0.034 (9)
C14B0.080 (7)0.132 (11)0.102 (8)−0.029 (7)−0.013 (6)0.001 (7)
C150.0746 (14)0.125 (2)0.130 (2)−0.0437 (15)0.0464 (14)−0.0228 (18)
S1—C101.6805 (14)C7—C81.4260 (18)
O1—N21.3698 (18)C8—C91.4273 (18)
O1—C71.4118 (18)C9—H9A0.9300
O2—C71.1982 (17)C11—C121.486 (2)
N1—N21.3051 (17)C12—C13B1.45 (2)
N1—C81.3515 (17)C12—C13A1.530 (10)
N1—C61.4482 (18)C12—H12A0.9600
N3—C91.2669 (17)C12—H12B0.9600
N3—N41.3838 (16)C12—H12C0.9700
N4—C111.3800 (17)C12—H12D0.9700
N4—C101.3806 (16)C13A—C14A1.539 (8)
N5—C101.3355 (19)C13A—H13A0.9700
N5—N61.3720 (18)C13A—H13B0.9700
N5—H1N50.855 (18)C14A—H14A0.9600
N6—C111.296 (2)C14A—H14B0.9600
C1—C61.373 (2)C14A—H14C0.9600
C1—C21.381 (2)C13B—C14B1.46 (2)
C1—H1A0.9300C13B—H13C0.9700
C2—C31.374 (3)C13B—H13D0.9700
C2—H2A0.9300C14B—H14D0.9600
C3—C41.384 (3)C14B—H14E0.9600
C3—C151.520 (3)C14B—H14F0.9600
C4—C51.381 (3)C15—H15A0.9600
C4—H4A0.9300C15—H15B0.9600
C5—C61.372 (2)C15—H15C0.9600
C5—H5A0.9300
N2—O1—C7111.44 (10)N6—C11—C12125.49 (14)
N2—N1—C8115.36 (12)N4—C11—C12123.46 (14)
N2—N1—C6118.51 (12)C13B—C12—C11124.6 (8)
C8—N1—C6126.06 (12)C11—C12—C13A108.9 (3)
N1—N2—O1104.38 (11)C13B—C12—H12A113.0
C9—N3—N4118.50 (11)C11—C12—H12A109.8
C11—N4—C10108.14 (11)C13A—C12—H12A111.1
C11—N4—N3118.55 (11)C13B—C12—H12B88.6
C10—N4—N3133.28 (11)C11—C12—H12B109.7
C10—N5—N6114.54 (13)C13A—C12—H12B109.0
C10—N5—H1N5125.4 (12)H12A—C12—H12B108.4
N6—N5—H1N5120.0 (12)C13B—C12—H12C108.4
C11—N6—N5103.75 (12)C11—C12—H12C107.0
C6—C1—C2118.49 (15)C13A—C12—H12C103.1
C6—C1—H1A120.8H12B—C12—H12C118.7
C2—C1—H1A120.8C13B—C12—H12D101.6
C3—C2—C1121.25 (18)C11—C12—H12D107.3
C3—C2—H2A119.4C13A—C12—H12D122.7
C1—C2—H2A119.4H12A—C12—H12D96.0
C2—C3—C4118.55 (17)H12C—C12—H12D106.8
C2—C3—C15120.6 (2)C12—C13A—C14A111.7 (6)
C4—C3—C15120.82 (18)C12—C13A—H13A109.3
C5—C4—C3121.52 (17)C14A—C13A—H13A109.3
C5—C4—H4A119.2C12—C13A—H13B109.3
C3—C4—H4A119.2C14A—C13A—H13B109.3
C6—C5—C4118.02 (18)H13A—C13A—H13B107.9
C6—C5—H5A121.0C12—C13B—C14B103.8 (12)
C4—C5—H5A121.0C12—C13B—H13C111.0
C5—C6—C1122.16 (15)C14B—C13B—H13C111.0
C5—C6—N1118.00 (14)C12—C13B—H13D111.0
C1—C6—N1119.76 (13)C14B—C13B—H13D111.0
O2—C7—O1120.32 (12)H13C—C13B—H13D109.0
O2—C7—C8136.30 (14)C13B—C14B—H14D109.5
O1—C7—C8103.37 (12)C13B—C14B—H14E109.5
N1—C8—C7105.45 (12)H14D—C14B—H14E109.5
N1—C8—C9121.96 (12)C13B—C14B—H14F109.5
C7—C8—C9132.54 (12)H14D—C14B—H14F109.5
N3—C9—C8119.54 (12)H14E—C14B—H14F109.5
N3—C9—H9A120.2C3—C15—H15A109.5
C8—C9—H9A120.2C3—C15—H15B109.5
N5—C10—N4102.51 (12)H15A—C15—H15B109.5
N5—C10—S1126.47 (11)C3—C15—H15C109.5
N4—C10—S1131.01 (10)H15A—C15—H15C109.5
N6—C11—N4111.05 (13)H15B—C15—H15C109.5
C8—N1—N2—O10.29 (16)O1—C7—C8—N10.69 (13)
C6—N1—N2—O1−176.84 (11)O2—C7—C8—C9−1.1 (3)
C7—O1—N2—N10.21 (15)O1—C7—C8—C9177.93 (13)
C9—N3—N4—C11−175.21 (13)N4—N3—C9—C8−178.92 (11)
C9—N3—N4—C107.3 (2)N1—C8—C9—N3−177.96 (12)
C10—N5—N6—C11−0.05 (18)C7—C8—C9—N35.2 (2)
C6—C1—C2—C30.1 (3)N6—N5—C10—N40.44 (16)
C1—C2—C3—C4−0.4 (3)N6—N5—C10—S1−179.18 (11)
C1—C2—C3—C15179.3 (2)C11—N4—C10—N5−0.64 (14)
C2—C3—C4—C50.9 (3)N3—N4—C10—N5177.05 (13)
C15—C3—C4—C5−178.8 (2)C11—N4—C10—S1178.95 (11)
C3—C4—C5—C6−1.0 (3)N3—N4—C10—S1−3.4 (2)
C4—C5—C6—C10.7 (3)N5—N6—C11—N4−0.38 (17)
C4—C5—C6—N1177.43 (18)N5—N6—C11—C12179.64 (16)
C2—C1—C6—C5−0.2 (3)C10—N4—C11—N60.68 (17)
C2—C1—C6—N1−176.94 (15)N3—N4—C11—N6−177.41 (12)
N2—N1—C6—C573.94 (19)C10—N4—C11—C12−179.35 (15)
C8—N1—C6—C5−102.85 (18)N3—N4—C11—C122.6 (2)
N2—N1—C6—C1−109.20 (17)N6—C11—C12—C13B116.8 (9)
C8—N1—C6—C174.02 (19)N4—C11—C12—C13B−63.2 (9)
N2—O1—C7—O2178.68 (12)N6—C11—C12—C13A100.0 (4)
N2—O1—C7—C8−0.57 (14)N4—C11—C12—C13A−80.0 (4)
N2—N1—C8—C7−0.65 (15)C13B—C12—C13A—C14A40 (2)
C6—N1—C8—C7176.23 (12)C11—C12—C13A—C14A179.8 (5)
N2—N1—C8—C9−178.25 (12)C11—C12—C13B—C14B−74.1 (13)
C6—N1—C8—C9−1.4 (2)C13A—C12—C13B—C14B−26 (2)
O2—C7—C8—N1−178.37 (15)
D—H···AD—HH···AD···AD—H···A
N5—H1N5···S1i0.857 (18)2.440 (18)3.2933 (13)174.3 (16)
C1—H1A···O2ii0.932.483.346 (2)154
C9—H9A···S10.932.423.1845 (13)139
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N5—H1N5⋯S1i0.857 (18)2.440 (18)3.2933 (13)174.3 (16)
C1—H1A⋯O2ii0.932.483.346 (2)154
C9—H9A⋯S10.932.423.1845 (13)139

Symmetry codes: (i) ; (ii) .

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Hoong-Kun Fun; Ching Kheng Quah; Balakrishna Kalluraya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-31

5.  Structure validation in chemical crystallography.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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