| Literature DB >> 22065521 |
Hoong-Kun Fun, Ching Kheng Quah, Balakrishna Kalluraya.
Abstract
The title compound, C(15)H(16)N(6)O(2)S, exists in a trans configuration with respect to the acyclic N=C bond. The 1,2,3-oxadiazol-3-ium ring makes dihedral angles of 10.59 (8) and 73.94 (8)°, respectively, with the 1,2,4-triazole and benzene rings. The mol-ecular structure is stabilized by an intra-molecular C-H⋯S hydrogen bond, which generates an S(6) ring motif. In the crystal, mol-ecules are linked into inversion dimers by pairs of inter-molecular N-H⋯S hydrogen bonds, generating eight-membered R(2) (2)(8) ring motifs. The dimers are further connected by C-H⋯O hydrogen bonds, forming a sheet parallel to the bc plane. The ethyl group is disordered over two sets of sites with occupancies of 0.744 (7) and 0.256 (7).Entities:
Year: 2011 PMID: 22065521 PMCID: PMC3201362 DOI: 10.1107/S1600536811037287
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H16N6O2S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 5356 reflections |
| θ = 2.2–27.6° | |
| µ = 0.21 mm−1 | |
| β = 104.575 (2)° | Needle, colourless |
| 0.51 × 0.17 × 0.08 mm | |
| Bruker SMART APEXII DUO CCD area-detector diffractometer | 5003 independent reflections |
| Radiation source: fine-focus sealed tube | 3637 reflections with |
| graphite | |
| φ and ω scans | θmax = 30.1°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 18912 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 5003 reflections | (Δ/σ)max = 0.001 |
| 243 parameters | Δρmax = 0.22 e Å−3 |
| 0 restraints | Δρmin = −0.21 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Occ. (<1) | |||||
| S1 | 1.08849 (3) | 1.22661 (6) | 0.061779 (16) | 0.04353 (11) | |
| O1 | 1.07417 (9) | 0.32936 (18) | 0.22957 (5) | 0.0546 (3) | |
| O2 | 0.90860 (8) | 0.41866 (18) | 0.18192 (5) | 0.0532 (3) | |
| N1 | 1.15527 (9) | 0.59146 (19) | 0.20345 (5) | 0.0412 (3) | |
| N2 | 1.17089 (11) | 0.4104 (2) | 0.23528 (7) | 0.0560 (3) | |
| N3 | 0.93160 (9) | 0.8734 (2) | 0.11642 (5) | 0.0419 (3) | |
| N4 | 0.90503 (8) | 1.05639 (18) | 0.07899 (5) | 0.0372 (2) | |
| N5 | 0.88806 (10) | 1.3345 (2) | 0.01976 (6) | 0.0487 (3) | |
| N6 | 0.78985 (10) | 1.2811 (2) | 0.02200 (7) | 0.0552 (3) | |
| C1 | 1.26773 (13) | 0.9030 (3) | 0.23096 (9) | 0.0590 (4) | |
| H1A | 1.2297 | 0.9496 | 0.2595 | 0.071* | |
| C2 | 1.34955 (13) | 1.0220 (3) | 0.22159 (10) | 0.0661 (5) | |
| H2A | 1.3667 | 1.1500 | 0.2443 | 0.079* | |
| C3 | 1.40617 (13) | 0.9549 (4) | 0.17941 (9) | 0.0676 (5) | |
| C4 | 1.37997 (16) | 0.7634 (4) | 0.14644 (10) | 0.0825 (7) | |
| H4A | 1.4184 | 0.7155 | 0.1182 | 0.099* | |
| C5 | 1.29812 (14) | 0.6417 (4) | 0.15446 (9) | 0.0684 (5) | |
| H5A | 1.2804 | 0.5142 | 0.1316 | 0.082* | |
| C6 | 1.24376 (11) | 0.7144 (2) | 0.19713 (7) | 0.0443 (3) | |
| C7 | 0.99772 (11) | 0.4668 (2) | 0.19272 (6) | 0.0411 (3) | |
| C8 | 1.05554 (10) | 0.6411 (2) | 0.17668 (6) | 0.0361 (3) | |
| C9 | 1.02620 (10) | 0.8309 (2) | 0.13889 (6) | 0.0386 (3) | |
| H9A | 1.0762 | 0.9226 | 0.1308 | 0.046* | |
| C10 | 0.96113 (10) | 1.2042 (2) | 0.05372 (6) | 0.0373 (3) | |
| C11 | 0.80236 (11) | 1.1116 (3) | 0.05860 (7) | 0.0474 (3) | |
| C12 | 0.71870 (12) | 0.9897 (3) | 0.07693 (11) | 0.0679 (5) | |
| H12A | 0.6594 | 1.0797 | 0.0726 | 0.081* | 0.744 (7) |
| H12B | 0.7412 | 0.9443 | 0.1217 | 0.081* | 0.744 (7) |
| H12C | 0.6567 | 1.0756 | 0.0638 | 0.081* | 0.256 (7) |
| H12D | 0.7358 | 0.9814 | 0.1243 | 0.081* | 0.256 (7) |
| C13A | 0.6932 (7) | 0.7918 (14) | 0.0331 (4) | 0.102 (3) | 0.744 (7) |
| H13A | 0.7545 | 0.7043 | 0.0384 | 0.123* | 0.744 (7) |
| H13B | 0.6718 | 0.8368 | −0.0122 | 0.123* | 0.744 (7) |
| C14A | 0.6070 (3) | 0.6572 (8) | 0.0496 (3) | 0.164 (3) | 0.744 (7) |
| H14A | 0.6042 | 0.5194 | 0.0290 | 0.245* | 0.744 (7) |
| H14B | 0.5423 | 0.7291 | 0.0340 | 0.245* | 0.744 (7) |
| H14C | 0.6209 | 0.6390 | 0.0961 | 0.245* | 0.744 (7) |
| C13B | 0.6925 (14) | 0.770 (4) | 0.0589 (11) | 0.082 (6) | 0.256 (7) |
| H13C | 0.6474 | 0.7109 | 0.0839 | 0.098* | 0.256 (7) |
| H13D | 0.7538 | 0.6814 | 0.0658 | 0.098* | 0.256 (7) |
| C14B | 0.6399 (10) | 0.782 (2) | −0.0107 (6) | 0.111 (5) | 0.256 (7) |
| H14D | 0.6068 | 0.6475 | −0.0247 | 0.166* | 0.256 (7) |
| H14E | 0.6892 | 0.8125 | −0.0354 | 0.166* | 0.256 (7) |
| H14F | 0.5892 | 0.8937 | −0.0175 | 0.166* | 0.256 (7) |
| C15 | 1.49528 (18) | 1.0890 (5) | 0.16902 (14) | 0.1059 (9) | |
| H15A | 1.4908 | 1.2311 | 0.1855 | 0.159* | |
| H15B | 1.4921 | 1.0958 | 0.1232 | 0.159* | |
| H15C | 1.5592 | 1.0247 | 0.1919 | 0.159* | |
| H1N5 | 0.8984 (13) | 1.445 (3) | −0.0018 (8) | 0.053 (5)* |
| S1 | 0.04646 (19) | 0.0376 (2) | 0.04930 (19) | −0.00191 (14) | 0.01724 (14) | 0.00811 (15) |
| O1 | 0.0733 (7) | 0.0373 (6) | 0.0597 (6) | 0.0047 (5) | 0.0290 (5) | 0.0156 (5) |
| O2 | 0.0634 (7) | 0.0455 (6) | 0.0582 (6) | −0.0161 (5) | 0.0295 (5) | −0.0057 (5) |
| N1 | 0.0470 (6) | 0.0360 (6) | 0.0430 (5) | 0.0075 (5) | 0.0159 (5) | 0.0074 (5) |
| N2 | 0.0652 (8) | 0.0450 (8) | 0.0605 (7) | 0.0138 (6) | 0.0207 (6) | 0.0192 (6) |
| N3 | 0.0436 (6) | 0.0370 (6) | 0.0467 (6) | 0.0015 (5) | 0.0143 (5) | 0.0112 (5) |
| N4 | 0.0403 (5) | 0.0317 (6) | 0.0409 (5) | 0.0015 (4) | 0.0127 (4) | 0.0046 (4) |
| N5 | 0.0514 (7) | 0.0394 (7) | 0.0548 (7) | 0.0039 (6) | 0.0128 (5) | 0.0145 (6) |
| N6 | 0.0474 (7) | 0.0497 (8) | 0.0666 (8) | 0.0070 (6) | 0.0108 (6) | 0.0151 (7) |
| C1 | 0.0542 (8) | 0.0500 (10) | 0.0791 (10) | 0.0052 (7) | 0.0286 (8) | −0.0071 (8) |
| C2 | 0.0557 (9) | 0.0518 (10) | 0.0933 (13) | −0.0060 (8) | 0.0234 (9) | −0.0122 (10) |
| C3 | 0.0485 (9) | 0.0806 (14) | 0.0764 (11) | −0.0124 (9) | 0.0203 (8) | −0.0046 (10) |
| C4 | 0.0672 (11) | 0.1099 (19) | 0.0830 (12) | −0.0267 (12) | 0.0424 (10) | −0.0313 (13) |
| C5 | 0.0622 (10) | 0.0821 (14) | 0.0679 (10) | −0.0176 (10) | 0.0293 (8) | −0.0269 (10) |
| C6 | 0.0396 (6) | 0.0440 (8) | 0.0494 (7) | 0.0044 (6) | 0.0115 (5) | 0.0046 (6) |
| C7 | 0.0599 (8) | 0.0309 (7) | 0.0384 (6) | −0.0021 (6) | 0.0234 (5) | −0.0015 (5) |
| C8 | 0.0436 (6) | 0.0301 (6) | 0.0379 (6) | 0.0011 (5) | 0.0161 (5) | 0.0017 (5) |
| C9 | 0.0425 (6) | 0.0309 (6) | 0.0454 (6) | −0.0014 (5) | 0.0167 (5) | 0.0051 (5) |
| C10 | 0.0480 (7) | 0.0305 (6) | 0.0346 (5) | 0.0000 (5) | 0.0126 (5) | 0.0005 (5) |
| C11 | 0.0424 (7) | 0.0443 (8) | 0.0555 (8) | 0.0043 (6) | 0.0119 (6) | 0.0050 (7) |
| C12 | 0.0438 (8) | 0.0637 (12) | 0.0984 (13) | 0.0038 (8) | 0.0222 (8) | 0.0150 (11) |
| C13A | 0.079 (3) | 0.067 (4) | 0.172 (8) | −0.012 (3) | 0.054 (5) | −0.010 (4) |
| C14A | 0.109 (3) | 0.099 (3) | 0.316 (8) | −0.047 (3) | 0.115 (4) | −0.049 (4) |
| C13B | 0.045 (5) | 0.052 (6) | 0.137 (15) | −0.018 (4) | 0.004 (7) | 0.034 (9) |
| C14B | 0.080 (7) | 0.132 (11) | 0.102 (8) | −0.029 (7) | −0.013 (6) | 0.001 (7) |
| C15 | 0.0746 (14) | 0.125 (2) | 0.130 (2) | −0.0437 (15) | 0.0464 (14) | −0.0228 (18) |
| S1—C10 | 1.6805 (14) | C7—C8 | 1.4260 (18) |
| O1—N2 | 1.3698 (18) | C8—C9 | 1.4273 (18) |
| O1—C7 | 1.4118 (18) | C9—H9A | 0.9300 |
| O2—C7 | 1.1982 (17) | C11—C12 | 1.486 (2) |
| N1—N2 | 1.3051 (17) | C12—C13B | 1.45 (2) |
| N1—C8 | 1.3515 (17) | C12—C13A | 1.530 (10) |
| N1—C6 | 1.4482 (18) | C12—H12A | 0.9600 |
| N3—C9 | 1.2669 (17) | C12—H12B | 0.9600 |
| N3—N4 | 1.3838 (16) | C12—H12C | 0.9700 |
| N4—C11 | 1.3800 (17) | C12—H12D | 0.9700 |
| N4—C10 | 1.3806 (16) | C13A—C14A | 1.539 (8) |
| N5—C10 | 1.3355 (19) | C13A—H13A | 0.9700 |
| N5—N6 | 1.3720 (18) | C13A—H13B | 0.9700 |
| N5—H1N5 | 0.855 (18) | C14A—H14A | 0.9600 |
| N6—C11 | 1.296 (2) | C14A—H14B | 0.9600 |
| C1—C6 | 1.373 (2) | C14A—H14C | 0.9600 |
| C1—C2 | 1.381 (2) | C13B—C14B | 1.46 (2) |
| C1—H1A | 0.9300 | C13B—H13C | 0.9700 |
| C2—C3 | 1.374 (3) | C13B—H13D | 0.9700 |
| C2—H2A | 0.9300 | C14B—H14D | 0.9600 |
| C3—C4 | 1.384 (3) | C14B—H14E | 0.9600 |
| C3—C15 | 1.520 (3) | C14B—H14F | 0.9600 |
| C4—C5 | 1.381 (3) | C15—H15A | 0.9600 |
| C4—H4A | 0.9300 | C15—H15B | 0.9600 |
| C5—C6 | 1.372 (2) | C15—H15C | 0.9600 |
| C5—H5A | 0.9300 | ||
| N2—O1—C7 | 111.44 (10) | N6—C11—C12 | 125.49 (14) |
| N2—N1—C8 | 115.36 (12) | N4—C11—C12 | 123.46 (14) |
| N2—N1—C6 | 118.51 (12) | C13B—C12—C11 | 124.6 (8) |
| C8—N1—C6 | 126.06 (12) | C11—C12—C13A | 108.9 (3) |
| N1—N2—O1 | 104.38 (11) | C13B—C12—H12A | 113.0 |
| C9—N3—N4 | 118.50 (11) | C11—C12—H12A | 109.8 |
| C11—N4—C10 | 108.14 (11) | C13A—C12—H12A | 111.1 |
| C11—N4—N3 | 118.55 (11) | C13B—C12—H12B | 88.6 |
| C10—N4—N3 | 133.28 (11) | C11—C12—H12B | 109.7 |
| C10—N5—N6 | 114.54 (13) | C13A—C12—H12B | 109.0 |
| C10—N5—H1N5 | 125.4 (12) | H12A—C12—H12B | 108.4 |
| N6—N5—H1N5 | 120.0 (12) | C13B—C12—H12C | 108.4 |
| C11—N6—N5 | 103.75 (12) | C11—C12—H12C | 107.0 |
| C6—C1—C2 | 118.49 (15) | C13A—C12—H12C | 103.1 |
| C6—C1—H1A | 120.8 | H12B—C12—H12C | 118.7 |
| C2—C1—H1A | 120.8 | C13B—C12—H12D | 101.6 |
| C3—C2—C1 | 121.25 (18) | C11—C12—H12D | 107.3 |
| C3—C2—H2A | 119.4 | C13A—C12—H12D | 122.7 |
| C1—C2—H2A | 119.4 | H12A—C12—H12D | 96.0 |
| C2—C3—C4 | 118.55 (17) | H12C—C12—H12D | 106.8 |
| C2—C3—C15 | 120.6 (2) | C12—C13A—C14A | 111.7 (6) |
| C4—C3—C15 | 120.82 (18) | C12—C13A—H13A | 109.3 |
| C5—C4—C3 | 121.52 (17) | C14A—C13A—H13A | 109.3 |
| C5—C4—H4A | 119.2 | C12—C13A—H13B | 109.3 |
| C3—C4—H4A | 119.2 | C14A—C13A—H13B | 109.3 |
| C6—C5—C4 | 118.02 (18) | H13A—C13A—H13B | 107.9 |
| C6—C5—H5A | 121.0 | C12—C13B—C14B | 103.8 (12) |
| C4—C5—H5A | 121.0 | C12—C13B—H13C | 111.0 |
| C5—C6—C1 | 122.16 (15) | C14B—C13B—H13C | 111.0 |
| C5—C6—N1 | 118.00 (14) | C12—C13B—H13D | 111.0 |
| C1—C6—N1 | 119.76 (13) | C14B—C13B—H13D | 111.0 |
| O2—C7—O1 | 120.32 (12) | H13C—C13B—H13D | 109.0 |
| O2—C7—C8 | 136.30 (14) | C13B—C14B—H14D | 109.5 |
| O1—C7—C8 | 103.37 (12) | C13B—C14B—H14E | 109.5 |
| N1—C8—C7 | 105.45 (12) | H14D—C14B—H14E | 109.5 |
| N1—C8—C9 | 121.96 (12) | C13B—C14B—H14F | 109.5 |
| C7—C8—C9 | 132.54 (12) | H14D—C14B—H14F | 109.5 |
| N3—C9—C8 | 119.54 (12) | H14E—C14B—H14F | 109.5 |
| N3—C9—H9A | 120.2 | C3—C15—H15A | 109.5 |
| C8—C9—H9A | 120.2 | C3—C15—H15B | 109.5 |
| N5—C10—N4 | 102.51 (12) | H15A—C15—H15B | 109.5 |
| N5—C10—S1 | 126.47 (11) | C3—C15—H15C | 109.5 |
| N4—C10—S1 | 131.01 (10) | H15A—C15—H15C | 109.5 |
| N6—C11—N4 | 111.05 (13) | H15B—C15—H15C | 109.5 |
| C8—N1—N2—O1 | 0.29 (16) | O1—C7—C8—N1 | 0.69 (13) |
| C6—N1—N2—O1 | −176.84 (11) | O2—C7—C8—C9 | −1.1 (3) |
| C7—O1—N2—N1 | 0.21 (15) | O1—C7—C8—C9 | 177.93 (13) |
| C9—N3—N4—C11 | −175.21 (13) | N4—N3—C9—C8 | −178.92 (11) |
| C9—N3—N4—C10 | 7.3 (2) | N1—C8—C9—N3 | −177.96 (12) |
| C10—N5—N6—C11 | −0.05 (18) | C7—C8—C9—N3 | 5.2 (2) |
| C6—C1—C2—C3 | 0.1 (3) | N6—N5—C10—N4 | 0.44 (16) |
| C1—C2—C3—C4 | −0.4 (3) | N6—N5—C10—S1 | −179.18 (11) |
| C1—C2—C3—C15 | 179.3 (2) | C11—N4—C10—N5 | −0.64 (14) |
| C2—C3—C4—C5 | 0.9 (3) | N3—N4—C10—N5 | 177.05 (13) |
| C15—C3—C4—C5 | −178.8 (2) | C11—N4—C10—S1 | 178.95 (11) |
| C3—C4—C5—C6 | −1.0 (3) | N3—N4—C10—S1 | −3.4 (2) |
| C4—C5—C6—C1 | 0.7 (3) | N5—N6—C11—N4 | −0.38 (17) |
| C4—C5—C6—N1 | 177.43 (18) | N5—N6—C11—C12 | 179.64 (16) |
| C2—C1—C6—C5 | −0.2 (3) | C10—N4—C11—N6 | 0.68 (17) |
| C2—C1—C6—N1 | −176.94 (15) | N3—N4—C11—N6 | −177.41 (12) |
| N2—N1—C6—C5 | 73.94 (19) | C10—N4—C11—C12 | −179.35 (15) |
| C8—N1—C6—C5 | −102.85 (18) | N3—N4—C11—C12 | 2.6 (2) |
| N2—N1—C6—C1 | −109.20 (17) | N6—C11—C12—C13B | 116.8 (9) |
| C8—N1—C6—C1 | 74.02 (19) | N4—C11—C12—C13B | −63.2 (9) |
| N2—O1—C7—O2 | 178.68 (12) | N6—C11—C12—C13A | 100.0 (4) |
| N2—O1—C7—C8 | −0.57 (14) | N4—C11—C12—C13A | −80.0 (4) |
| N2—N1—C8—C7 | −0.65 (15) | C13B—C12—C13A—C14A | 40 (2) |
| C6—N1—C8—C7 | 176.23 (12) | C11—C12—C13A—C14A | 179.8 (5) |
| N2—N1—C8—C9 | −178.25 (12) | C11—C12—C13B—C14B | −74.1 (13) |
| C6—N1—C8—C9 | −1.4 (2) | C13A—C12—C13B—C14B | −26 (2) |
| O2—C7—C8—N1 | −178.37 (15) |
| H··· | ||||
| N5—H1N5···S1i | 0.857 (18) | 2.440 (18) | 3.2933 (13) | 174.3 (16) |
| C1—H1A···O2ii | 0.93 | 2.48 | 3.346 (2) | 154 |
| C9—H9A···S1 | 0.93 | 2.42 | 3.1845 (13) | 139 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N5—H1 | 0.857 (18) | 2.440 (18) | 3.2933 (13) | 174.3 (16) |
| C1—H1 | 0.93 | 2.48 | 3.346 (2) | 154 |
| C9—H9 | 0.93 | 2.42 | 3.1845 (13) | 139 |
Symmetry codes: (i) ; (ii) .