Literature DB >> 21754026

3-(p-Tol-yl)-4-{3-[(phenyl-amino)-meth-yl]-7H-[1,2,4]triazolo[3,4-b][1,3,4]thia-diazin-6-yl}sydnone.

Hoong-Kun Fun, Ching Kheng Quah, Balakrishna Kalluraya.   

Abstract

In the title compound, C(20)H(17)N(7)O(2)S (systematic name: 3-(4-methyl-phen-yl)-4-{3-[(phenyl-amino)-meth-yl]-7H-1,2,4-triazolo[3,4-b][1,3,4]thia-diazin-6-yl}-1,2,3-oxadiazol-3-ium-5-olate), the 3,6-dihydro-2H-1,3,4-thia-diazine ring adopts a half-boat conformation. The oxadiazol-3-ium ring makes dihedral angles of 57.99 (6) and 54.48 (6)° with the phenyl and benzene rings, respectively, while the 1,2,4-triazole ring forms corresponding angles of 37.35 (6) and 73.89 (6)°. The dihedral angle between the oxadiazol-3-ium and 1,2,4-triazole rings is 21.12 (6)°. In the crystal, the mol-ecules are linked via inter-molecular N-H⋯O and C-H⋯N hydrogen bonds into a layer parallel to the (100) plane. The crystal structure is further consolidated by C-H⋯π inter-actions. An intra-molecular C-H⋯O hydrogen bond is also observed, which generates an S(6) ring motif.

Entities:  

Year:  2011        PMID: 21754026      PMCID: PMC3099773          DOI: 10.1107/S1600536811010786

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and the biological activity of sydnone derivatives, see: Rai et al. (2008 ▶); Kalluraya et al. (2002 ▶); Hedge et al. (2008 ▶). For general background to and the biological activity of triazolothia­diazine derivatives, see: Kalluraya & Rahiman (1997 ▶). For the synthesis of triazolothia­diazines, see: Kalluraya et al. (2003 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶). For bond-length data, see: Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For ring conformations, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C20H17N7O2S M = 419.47 Monoclinic, a = 10.1210 (4) Å b = 10.5065 (4) Å c = 19.6370 (6) Å β = 114.550 (2)° V = 1899.36 (12) Å3 Z = 4 Mo Kα radiation μ = 0.21 mm−1 T = 100 K 0.35 × 0.28 × 0.27 mm

Data collection

Bruker SMART APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.932, T max = 0.947 22363 measured reflections 6845 independent reflections 5754 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.109 S = 1.06 6845 reflections 272 parameters H-atom parameters constrained Δρmax = 0.49 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811010786/is2692sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811010786/is2692Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H17N7O2SF(000) = 872
Mr = 419.47Dx = 1.467 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 8225 reflections
a = 10.1210 (4) Åθ = 2.8–32.5°
b = 10.5065 (4) ŵ = 0.21 mm1
c = 19.6370 (6) ÅT = 100 K
β = 114.550 (2)°Block, orange
V = 1899.36 (12) Å30.35 × 0.28 × 0.27 mm
Z = 4
Bruker SMART APEXII DUO CCD area-detector diffractometer6845 independent reflections
Radiation source: fine-focus sealed tube5754 reflections with I > 2σ(I)
graphiteRint = 0.029
φ and ω scansθmax = 32.6°, θmin = 2.9°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −15→15
Tmin = 0.932, Tmax = 0.947k = −15→15
22363 measured reflectionsl = −29→29
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.109H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0589P)2 + 0.4436P] where P = (Fo2 + 2Fc2)/3
6845 reflections(Δ/σ)max = 0.002
272 parametersΔρmax = 0.49 e Å3
0 restraintsΔρmin = −0.25 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.76994 (3)0.59534 (2)1.086823 (13)0.01634 (7)
O10.29144 (9)0.96219 (7)1.00427 (4)0.01957 (15)
O20.51181 (10)0.92364 (7)1.10036 (4)0.02034 (16)
N10.39442 (11)0.30819 (8)0.79980 (5)0.01940 (18)
H10.44240.25000.83130.023*
N20.66867 (10)0.35357 (8)0.92354 (5)0.01599 (16)
N30.76192 (10)0.39417 (8)0.99600 (5)0.01605 (16)
N40.59144 (9)0.53924 (8)0.94311 (4)0.01301 (15)
N50.49010 (9)0.63271 (8)0.93523 (4)0.01330 (15)
N60.29928 (10)0.84348 (8)0.91836 (4)0.01433 (15)
N70.21520 (11)0.92571 (9)0.93095 (5)0.01882 (17)
C10.24653 (12)0.35564 (10)0.66818 (6)0.01858 (19)
H1A0.26960.44170.67590.022*
C20.15334 (12)0.31226 (11)0.59701 (6)0.0203 (2)
H2A0.11460.37010.55780.024*
C30.11761 (12)0.18408 (11)0.58390 (6)0.0203 (2)
H3A0.05570.15590.53640.024*
C40.17654 (12)0.09824 (10)0.64352 (6)0.01943 (19)
H4A0.15350.01230.63550.023*
C50.26881 (12)0.13991 (10)0.71441 (6)0.01743 (18)
H5A0.30700.08170.75340.021*
C60.30514 (11)0.26966 (9)0.72776 (5)0.01523 (17)
C70.44975 (12)0.43689 (9)0.81634 (5)0.01550 (17)
H7A0.37230.49450.81280.019*
H7B0.48720.46380.78050.019*
C80.56801 (11)0.44026 (9)0.89361 (5)0.01385 (17)
C90.71259 (11)0.50470 (9)1.00598 (5)0.01399 (16)
C100.68936 (11)0.74328 (9)1.03967 (6)0.01621 (18)
H10A0.69060.80511.07660.019*
H10B0.74770.77691.01520.019*
C110.53525 (11)0.72606 (9)0.98234 (5)0.01326 (16)
C120.42909 (11)0.82264 (9)0.97734 (5)0.01385 (17)
C130.42779 (12)0.90140 (9)1.03598 (5)0.01612 (18)
C140.24541 (11)0.79366 (9)0.84281 (5)0.01405 (17)
C150.10991 (12)0.73640 (11)0.81278 (6)0.0201 (2)
H15A0.05570.72750.84090.024*
C160.05717 (12)0.69250 (12)0.73922 (6)0.0215 (2)
H16A−0.03340.65340.71800.026*
C170.13799 (12)0.70619 (10)0.69677 (5)0.01611 (18)
C180.27547 (12)0.76301 (10)0.72997 (5)0.01676 (18)
H18A0.33080.77100.70240.020*
C190.33082 (12)0.80769 (10)0.80326 (5)0.01638 (18)
H19A0.42190.84570.82510.020*
C200.07796 (13)0.66428 (11)0.61610 (6)0.0207 (2)
H20A0.02100.58860.60990.031*
H20B0.15670.64700.60220.031*
H20C0.01800.73050.58480.031*
U11U22U33U12U13U23
S10.01723 (12)0.01541 (11)0.01298 (10)−0.00007 (8)0.00287 (9)−0.00047 (7)
O10.0246 (4)0.0170 (3)0.0176 (3)0.0046 (3)0.0092 (3)−0.0020 (3)
O20.0298 (4)0.0152 (3)0.0137 (3)0.0000 (3)0.0068 (3)−0.0018 (2)
N10.0258 (5)0.0125 (3)0.0133 (3)−0.0004 (3)0.0017 (3)−0.0003 (3)
N20.0175 (4)0.0158 (4)0.0149 (3)0.0018 (3)0.0069 (3)−0.0007 (3)
N30.0152 (4)0.0168 (4)0.0154 (3)0.0015 (3)0.0056 (3)−0.0002 (3)
N40.0135 (4)0.0120 (3)0.0127 (3)0.0014 (3)0.0046 (3)−0.0004 (3)
N50.0151 (4)0.0114 (3)0.0135 (3)0.0021 (3)0.0061 (3)0.0004 (3)
N60.0169 (4)0.0128 (3)0.0136 (3)0.0011 (3)0.0066 (3)0.0006 (3)
N70.0214 (4)0.0178 (4)0.0173 (4)0.0049 (3)0.0081 (3)−0.0010 (3)
C10.0210 (5)0.0182 (4)0.0146 (4)0.0002 (4)0.0055 (4)0.0007 (3)
C20.0192 (5)0.0264 (5)0.0143 (4)0.0004 (4)0.0058 (4)0.0013 (4)
C30.0178 (5)0.0278 (5)0.0152 (4)−0.0025 (4)0.0067 (4)−0.0050 (4)
C40.0186 (5)0.0200 (4)0.0203 (4)−0.0017 (4)0.0087 (4)−0.0059 (3)
C50.0186 (5)0.0156 (4)0.0175 (4)0.0009 (4)0.0069 (4)−0.0016 (3)
C60.0164 (4)0.0157 (4)0.0136 (4)0.0008 (3)0.0062 (3)−0.0016 (3)
C70.0191 (5)0.0137 (4)0.0126 (4)0.0004 (3)0.0055 (3)−0.0002 (3)
C80.0166 (4)0.0128 (4)0.0134 (4)−0.0003 (3)0.0074 (3)−0.0010 (3)
C90.0123 (4)0.0153 (4)0.0136 (4)0.0001 (3)0.0046 (3)0.0007 (3)
C100.0157 (4)0.0137 (4)0.0168 (4)−0.0010 (3)0.0043 (3)−0.0010 (3)
C110.0157 (4)0.0122 (4)0.0124 (3)0.0000 (3)0.0064 (3)0.0008 (3)
C120.0167 (4)0.0118 (4)0.0126 (3)0.0008 (3)0.0056 (3)0.0001 (3)
C130.0225 (5)0.0114 (4)0.0153 (4)0.0014 (3)0.0087 (4)0.0010 (3)
C140.0157 (4)0.0140 (4)0.0120 (3)0.0011 (3)0.0053 (3)0.0008 (3)
C150.0167 (5)0.0283 (5)0.0175 (4)−0.0025 (4)0.0091 (4)−0.0018 (4)
C160.0155 (5)0.0306 (5)0.0176 (4)−0.0047 (4)0.0061 (4)−0.0026 (4)
C170.0161 (4)0.0175 (4)0.0132 (4)0.0011 (3)0.0046 (3)0.0015 (3)
C180.0184 (5)0.0190 (4)0.0139 (4)−0.0026 (4)0.0078 (3)0.0013 (3)
C190.0170 (4)0.0177 (4)0.0144 (4)−0.0033 (3)0.0066 (3)0.0008 (3)
C200.0203 (5)0.0254 (5)0.0134 (4)−0.0004 (4)0.0040 (4)−0.0004 (3)
S1—C91.7315 (10)C4—H4A0.9300
S1—C101.8196 (10)C5—C61.4079 (14)
O1—N71.3756 (12)C5—H5A0.9300
O1—C131.4093 (13)C7—C81.4924 (14)
O2—C131.2177 (12)C7—H7A0.9700
N1—C61.3855 (12)C7—H7B0.9700
N1—C71.4479 (13)C10—C111.5079 (14)
N1—H10.8621C10—H10A0.9700
N2—C81.3097 (13)C10—H10B0.9700
N2—N31.4075 (12)C11—C121.4511 (14)
N3—C91.3106 (13)C12—C131.4226 (13)
N4—C81.3751 (12)C14—C151.3851 (15)
N4—C91.3790 (12)C14—C191.3893 (14)
N4—N51.3814 (11)C15—C161.3941 (15)
N5—C111.2943 (12)C15—H15A0.9300
N6—N71.3063 (12)C16—C171.3968 (15)
N6—C121.3605 (13)C16—H16A0.9300
N6—C141.4491 (12)C17—C181.4013 (15)
C1—C21.3983 (14)C17—C201.5075 (14)
C1—C61.3999 (14)C18—C191.3914 (13)
C1—H1A0.9300C18—H18A0.9300
C2—C31.3904 (16)C19—H19A0.9300
C2—H2A0.9300C20—H20A0.9600
C3—C41.3998 (16)C20—H20B0.9600
C3—H3A0.9300C20—H20C0.9600
C4—C51.3861 (14)
C9—S1—C1095.43 (5)N3—C9—N4110.58 (8)
N7—O1—C13110.89 (8)N3—C9—S1128.39 (8)
C6—N1—C7121.96 (8)N4—C9—S1120.71 (7)
C6—N1—H1117.3C11—C10—S1112.54 (7)
C7—N1—H1116.9C11—C10—H10A109.1
C8—N2—N3108.22 (8)S1—C10—H10A109.1
C9—N3—N2106.42 (8)C11—C10—H10B109.1
C8—N4—C9105.18 (8)S1—C10—H10B109.1
C8—N4—N5123.82 (8)H10A—C10—H10B107.8
C9—N4—N5129.05 (8)N5—C11—C12116.74 (9)
C11—N5—N4115.69 (8)N5—C11—C10124.96 (9)
N7—N6—C12114.83 (8)C12—C11—C10118.28 (8)
N7—N6—C14115.79 (8)N6—C12—C13105.37 (9)
C12—N6—C14129.26 (8)N6—C12—C11126.59 (8)
N6—N7—O1104.84 (8)C13—C12—C11127.41 (9)
C2—C1—C6120.04 (10)O2—C13—O1120.33 (9)
C2—C1—H1A120.0O2—C13—C12135.62 (10)
C6—C1—H1A120.0O1—C13—C12104.05 (8)
C3—C2—C1121.08 (10)C15—C14—C19122.95 (9)
C3—C2—H2A119.5C15—C14—N6118.54 (9)
C1—C2—H2A119.5C19—C14—N6118.50 (9)
C2—C3—C4118.79 (10)C14—C15—C16118.04 (10)
C2—C3—H3A120.6C14—C15—H15A121.0
C4—C3—H3A120.6C16—C15—H15A121.0
C5—C4—C3120.77 (10)C15—C16—C17121.14 (10)
C5—C4—H4A119.6C15—C16—H16A119.4
C3—C4—H4A119.6C17—C16—H16A119.4
C4—C5—C6120.51 (9)C16—C17—C18118.74 (9)
C4—C5—H5A119.7C16—C17—C20121.11 (10)
C6—C5—H5A119.7C18—C17—C20120.13 (9)
N1—C6—C1122.34 (9)C19—C18—C17121.34 (9)
N1—C6—C5118.82 (9)C19—C18—H18A119.3
C1—C6—C5118.81 (9)C17—C18—H18A119.3
N1—C7—C8108.80 (8)C14—C19—C18117.77 (10)
N1—C7—H7A109.9C14—C19—H19A121.1
C8—C7—H7A109.9C18—C19—H19A121.1
N1—C7—H7B109.9C17—C20—H20A109.5
C8—C7—H7B109.9C17—C20—H20B109.5
H7A—C7—H7B108.3H20A—C20—H20B109.5
N2—C8—N4109.59 (8)C17—C20—H20C109.5
N2—C8—C7125.84 (9)H20A—C20—H20C109.5
N4—C8—C7124.51 (9)H20B—C20—H20C109.5
C8—N2—N3—C9−0.32 (11)C9—S1—C10—C1146.28 (8)
C8—N4—N5—C11−172.93 (9)N4—N5—C11—C12−177.38 (8)
C9—N4—N5—C1125.42 (14)N4—N5—C11—C104.59 (14)
C12—N6—N7—O1−1.21 (12)S1—C10—C11—N5−43.10 (12)
C14—N6—N7—O1−177.58 (8)S1—C10—C11—C12138.89 (8)
C13—O1—N7—N61.44 (11)N7—N6—C12—C130.52 (12)
C6—C1—C2—C3−0.22 (17)C14—N6—C12—C13176.30 (9)
C1—C2—C3—C40.11 (17)N7—N6—C12—C11171.94 (9)
C2—C3—C4—C50.03 (17)C14—N6—C12—C11−12.28 (16)
C3—C4—C5—C6−0.06 (17)N5—C11—C12—N6−17.48 (15)
C7—N1—C6—C1−8.93 (16)C10—C11—C12—N6160.69 (9)
C7—N1—C6—C5172.89 (10)N5—C11—C12—C13152.08 (10)
C2—C1—C6—N1−177.99 (11)C10—C11—C12—C13−29.75 (15)
C2—C1—C6—C50.19 (16)N7—O1—C13—O2178.77 (9)
C4—C5—C6—N1178.20 (10)N7—O1—C13—C12−1.14 (11)
C4—C5—C6—C1−0.05 (16)N6—C12—C13—O2−179.49 (12)
C6—N1—C7—C8−166.77 (10)C11—C12—C13—O29.2 (2)
N3—N2—C8—N40.91 (11)N6—C12—C13—O10.39 (10)
N3—N2—C8—C7178.01 (9)C11—C12—C13—O1−170.93 (9)
C9—N4—C8—N2−1.12 (11)N7—N6—C14—C15−55.54 (13)
N5—N4—C8—N2−166.45 (9)C12—N6—C14—C15128.71 (11)
C9—N4—C8—C7−178.27 (9)N7—N6—C14—C19123.23 (10)
N5—N4—C8—C716.41 (15)C12—N6—C14—C19−52.52 (14)
N1—C7—C8—N240.77 (14)C19—C14—C15—C16−0.75 (16)
N1—C7—C8—N4−142.55 (10)N6—C14—C15—C16177.97 (10)
N2—N3—C9—N4−0.40 (11)C14—C15—C16—C17−0.28 (17)
N2—N3—C9—S1173.15 (8)C15—C16—C17—C181.25 (17)
C8—N4—C9—N30.92 (11)C15—C16—C17—C20−177.10 (11)
N5—N4—C9—N3165.20 (9)C16—C17—C18—C19−1.25 (16)
C8—N4—C9—S1−173.20 (7)C20—C17—C18—C19177.12 (10)
N5—N4—C9—S1−8.92 (14)C15—C14—C19—C180.75 (15)
C10—S1—C9—N3161.54 (10)N6—C14—C19—C18−177.96 (9)
C10—S1—C9—N4−25.49 (9)C17—C18—C19—C140.28 (15)
Cg1 is the centroid of the C1–C6 phenyl ring.
D—H···AD—HH···AD···AD—H···A
C10—H10A···O20.972.403.1654 (14)136
N1—H1···O2i0.862.203.0218 (11)160
C18—H18A···N2ii0.932.623.4246 (14)145
C15—H15A···Cg1iii0.932.733.5537 (14)148
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 phenyl ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C10—H10A⋯O20.972.403.1654 (14)136
N1—H1⋯O2i0.862.203.0218 (11)160
C18—H18A⋯N2ii0.932.623.4246 (14)145
C15—H15ACg1iii0.932.733.5537 (14)148

Symmetry codes: (i) ; (ii) ; (iii) .

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Jyothi C Hegde; K S Girisha; Adithya Adhikari; Balakrishna Kalluraya
Journal:  Eur J Med Chem       Date:  2008-03-04       Impact factor: 6.514

3.  Convenient access to 1,3,4-trisubstituted pyrazoles carrying 5-nitrothiophene moiety via 1,3-dipolar cycloaddition of sydnones with acetylenic ketones and their antimicrobial evaluation.

Authors:  N Satheesha Rai; Balakrishna Kalluraya; B Lingappa; Shaliny Shenoy; Vedavati G Puranic
Journal:  Eur J Med Chem       Date:  2007-08-30       Impact factor: 6.514

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  4 in total

1.  (E)-4-{[(3-Propyl-5-sulfanyl-idene-4,5-dihydro-1H-1,2,4-triazol-4-yl)imino]-meth-yl}-3-(p-tol-yl)-1,2,3-oxadiazol-3-ium-5-olate.

Authors:  Hoong-Kun Fun; Ching Kheng Quah; Balakrishna Kalluraya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-17

2.  Ethyl 5-methyl-1-(4-nitro-phen-yl)-1H-1,2,3-triazole-4-carboxyl-ate.

Authors:  Hoong-Kun Fun; Ching Kheng Quah; Balakrishna Kalluraya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-27

3.  3-(4-Methyl-phen-yl)-4-[(thio-semi-carba-zono)meth-yl]-1,2,3-oxa-diazol-3-ium-5-olate 1,4-dioxane hemisolvate.

Authors:  M Abdul Rahiman; G N Ravikumar; Wan-Sin Loh; Ibrahim Abdul Razak
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-13

4.  N'-[1-(4-Chloro-phen-yl)ethyl-idene]-5-methyl-1-(4-nitro-phen-yl)-1H-1,2,3-triazole-4-carbohydrazide.

Authors:  Hoong-Kun Fun; Ching Kheng Quah; Balakrishna Kalluraya; Shobhitha Shetty
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-23
  4 in total

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