| Literature DB >> 21754026 |
Hoong-Kun Fun, Ching Kheng Quah, Balakrishna Kalluraya.
Abstract
In the title compound, C(20)H(17)N(7)O(2)S (systematic name: 3-(4-methyl-phen-yl)-4-{3-[(phenyl-amino)-meth-yl]-7H-1,2,4-triazolo[3,4-b][1,3,4]thia-diazin-6-yl}-1,2,3-oxadiazol-3-ium-5-olate), the 3,6-dihydro-2H-1,3,4-thia-diazine ring adopts a half-boat conformation. The oxadiazol-3-ium ring makes dihedral angles of 57.99 (6) and 54.48 (6)° with the phenyl and benzene rings, respectively, while the 1,2,4-triazole ring forms corresponding angles of 37.35 (6) and 73.89 (6)°. The dihedral angle between the oxadiazol-3-ium and 1,2,4-triazole rings is 21.12 (6)°. In the crystal, the mol-ecules are linked via inter-molecular N-H⋯O and C-H⋯N hydrogen bonds into a layer parallel to the (100) plane. The crystal structure is further consolidated by C-H⋯π inter-actions. An intra-molecular C-H⋯O hydrogen bond is also observed, which generates an S(6) ring motif.Entities:
Year: 2011 PMID: 21754026 PMCID: PMC3099773 DOI: 10.1107/S1600536811010786
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H17N7O2S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 8225 reflections |
| θ = 2.8–32.5° | |
| µ = 0.21 mm−1 | |
| β = 114.550 (2)° | Block, orange |
| 0.35 × 0.28 × 0.27 mm | |
| Bruker SMART APEXII DUO CCD area-detector diffractometer | 6845 independent reflections |
| Radiation source: fine-focus sealed tube | 5754 reflections with |
| graphite | |
| φ and ω scans | θmax = 32.6°, θmin = 2.9° |
| Absorption correction: multi-scan ( | |
| 22363 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 6845 reflections | (Δ/σ)max = 0.002 |
| 272 parameters | Δρmax = 0.49 e Å−3 |
| 0 restraints | Δρmin = −0.25 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| S1 | 0.76994 (3) | 0.59534 (2) | 1.086823 (13) | 0.01634 (7) | |
| O1 | 0.29144 (9) | 0.96219 (7) | 1.00427 (4) | 0.01957 (15) | |
| O2 | 0.51181 (10) | 0.92364 (7) | 1.10036 (4) | 0.02034 (16) | |
| N1 | 0.39442 (11) | 0.30819 (8) | 0.79980 (5) | 0.01940 (18) | |
| H1 | 0.4424 | 0.2500 | 0.8313 | 0.023* | |
| N2 | 0.66867 (10) | 0.35357 (8) | 0.92354 (5) | 0.01599 (16) | |
| N3 | 0.76192 (10) | 0.39417 (8) | 0.99600 (5) | 0.01605 (16) | |
| N4 | 0.59144 (9) | 0.53924 (8) | 0.94311 (4) | 0.01301 (15) | |
| N5 | 0.49010 (9) | 0.63271 (8) | 0.93523 (4) | 0.01330 (15) | |
| N6 | 0.29928 (10) | 0.84348 (8) | 0.91836 (4) | 0.01433 (15) | |
| N7 | 0.21520 (11) | 0.92571 (9) | 0.93095 (5) | 0.01882 (17) | |
| C1 | 0.24653 (12) | 0.35564 (10) | 0.66818 (6) | 0.01858 (19) | |
| H1A | 0.2696 | 0.4417 | 0.6759 | 0.022* | |
| C2 | 0.15334 (12) | 0.31226 (11) | 0.59701 (6) | 0.0203 (2) | |
| H2A | 0.1146 | 0.3701 | 0.5578 | 0.024* | |
| C3 | 0.11761 (12) | 0.18408 (11) | 0.58390 (6) | 0.0203 (2) | |
| H3A | 0.0557 | 0.1559 | 0.5364 | 0.024* | |
| C4 | 0.17654 (12) | 0.09824 (10) | 0.64352 (6) | 0.01943 (19) | |
| H4A | 0.1535 | 0.0123 | 0.6355 | 0.023* | |
| C5 | 0.26881 (12) | 0.13991 (10) | 0.71441 (6) | 0.01743 (18) | |
| H5A | 0.3070 | 0.0817 | 0.7534 | 0.021* | |
| C6 | 0.30514 (11) | 0.26966 (9) | 0.72776 (5) | 0.01523 (17) | |
| C7 | 0.44975 (12) | 0.43689 (9) | 0.81634 (5) | 0.01550 (17) | |
| H7A | 0.3723 | 0.4945 | 0.8128 | 0.019* | |
| H7B | 0.4872 | 0.4638 | 0.7805 | 0.019* | |
| C8 | 0.56801 (11) | 0.44026 (9) | 0.89361 (5) | 0.01385 (17) | |
| C9 | 0.71259 (11) | 0.50470 (9) | 1.00598 (5) | 0.01399 (16) | |
| C10 | 0.68936 (11) | 0.74328 (9) | 1.03967 (6) | 0.01621 (18) | |
| H10A | 0.6906 | 0.8051 | 1.0766 | 0.019* | |
| H10B | 0.7477 | 0.7769 | 1.0152 | 0.019* | |
| C11 | 0.53525 (11) | 0.72606 (9) | 0.98234 (5) | 0.01326 (16) | |
| C12 | 0.42909 (11) | 0.82264 (9) | 0.97734 (5) | 0.01385 (17) | |
| C13 | 0.42779 (12) | 0.90140 (9) | 1.03598 (5) | 0.01612 (18) | |
| C14 | 0.24541 (11) | 0.79366 (9) | 0.84281 (5) | 0.01405 (17) | |
| C15 | 0.10991 (12) | 0.73640 (11) | 0.81278 (6) | 0.0201 (2) | |
| H15A | 0.0557 | 0.7275 | 0.8409 | 0.024* | |
| C16 | 0.05717 (12) | 0.69250 (12) | 0.73922 (6) | 0.0215 (2) | |
| H16A | −0.0334 | 0.6534 | 0.7180 | 0.026* | |
| C17 | 0.13799 (12) | 0.70619 (10) | 0.69677 (5) | 0.01611 (18) | |
| C18 | 0.27547 (12) | 0.76301 (10) | 0.72997 (5) | 0.01676 (18) | |
| H18A | 0.3308 | 0.7710 | 0.7024 | 0.020* | |
| C19 | 0.33082 (12) | 0.80769 (10) | 0.80326 (5) | 0.01638 (18) | |
| H19A | 0.4219 | 0.8457 | 0.8251 | 0.020* | |
| C20 | 0.07796 (13) | 0.66428 (11) | 0.61610 (6) | 0.0207 (2) | |
| H20A | 0.0210 | 0.5886 | 0.6099 | 0.031* | |
| H20B | 0.1567 | 0.6470 | 0.6022 | 0.031* | |
| H20C | 0.0180 | 0.7305 | 0.5848 | 0.031* |
| S1 | 0.01723 (12) | 0.01541 (11) | 0.01298 (10) | −0.00007 (8) | 0.00287 (9) | −0.00047 (7) |
| O1 | 0.0246 (4) | 0.0170 (3) | 0.0176 (3) | 0.0046 (3) | 0.0092 (3) | −0.0020 (3) |
| O2 | 0.0298 (4) | 0.0152 (3) | 0.0137 (3) | 0.0000 (3) | 0.0068 (3) | −0.0018 (2) |
| N1 | 0.0258 (5) | 0.0125 (3) | 0.0133 (3) | −0.0004 (3) | 0.0017 (3) | −0.0003 (3) |
| N2 | 0.0175 (4) | 0.0158 (4) | 0.0149 (3) | 0.0018 (3) | 0.0069 (3) | −0.0007 (3) |
| N3 | 0.0152 (4) | 0.0168 (4) | 0.0154 (3) | 0.0015 (3) | 0.0056 (3) | −0.0002 (3) |
| N4 | 0.0135 (4) | 0.0120 (3) | 0.0127 (3) | 0.0014 (3) | 0.0046 (3) | −0.0004 (3) |
| N5 | 0.0151 (4) | 0.0114 (3) | 0.0135 (3) | 0.0021 (3) | 0.0061 (3) | 0.0004 (3) |
| N6 | 0.0169 (4) | 0.0128 (3) | 0.0136 (3) | 0.0011 (3) | 0.0066 (3) | 0.0006 (3) |
| N7 | 0.0214 (4) | 0.0178 (4) | 0.0173 (4) | 0.0049 (3) | 0.0081 (3) | −0.0010 (3) |
| C1 | 0.0210 (5) | 0.0182 (4) | 0.0146 (4) | 0.0002 (4) | 0.0055 (4) | 0.0007 (3) |
| C2 | 0.0192 (5) | 0.0264 (5) | 0.0143 (4) | 0.0004 (4) | 0.0058 (4) | 0.0013 (4) |
| C3 | 0.0178 (5) | 0.0278 (5) | 0.0152 (4) | −0.0025 (4) | 0.0067 (4) | −0.0050 (4) |
| C4 | 0.0186 (5) | 0.0200 (4) | 0.0203 (4) | −0.0017 (4) | 0.0087 (4) | −0.0059 (3) |
| C5 | 0.0186 (5) | 0.0156 (4) | 0.0175 (4) | 0.0009 (4) | 0.0069 (4) | −0.0016 (3) |
| C6 | 0.0164 (4) | 0.0157 (4) | 0.0136 (4) | 0.0008 (3) | 0.0062 (3) | −0.0016 (3) |
| C7 | 0.0191 (5) | 0.0137 (4) | 0.0126 (4) | 0.0004 (3) | 0.0055 (3) | −0.0002 (3) |
| C8 | 0.0166 (4) | 0.0128 (4) | 0.0134 (4) | −0.0003 (3) | 0.0074 (3) | −0.0010 (3) |
| C9 | 0.0123 (4) | 0.0153 (4) | 0.0136 (4) | 0.0001 (3) | 0.0046 (3) | 0.0007 (3) |
| C10 | 0.0157 (4) | 0.0137 (4) | 0.0168 (4) | −0.0010 (3) | 0.0043 (3) | −0.0010 (3) |
| C11 | 0.0157 (4) | 0.0122 (4) | 0.0124 (3) | 0.0000 (3) | 0.0064 (3) | 0.0008 (3) |
| C12 | 0.0167 (4) | 0.0118 (4) | 0.0126 (3) | 0.0008 (3) | 0.0056 (3) | 0.0001 (3) |
| C13 | 0.0225 (5) | 0.0114 (4) | 0.0153 (4) | 0.0014 (3) | 0.0087 (4) | 0.0010 (3) |
| C14 | 0.0157 (4) | 0.0140 (4) | 0.0120 (3) | 0.0011 (3) | 0.0053 (3) | 0.0008 (3) |
| C15 | 0.0167 (5) | 0.0283 (5) | 0.0175 (4) | −0.0025 (4) | 0.0091 (4) | −0.0018 (4) |
| C16 | 0.0155 (5) | 0.0306 (5) | 0.0176 (4) | −0.0047 (4) | 0.0061 (4) | −0.0026 (4) |
| C17 | 0.0161 (4) | 0.0175 (4) | 0.0132 (4) | 0.0011 (3) | 0.0046 (3) | 0.0015 (3) |
| C18 | 0.0184 (5) | 0.0190 (4) | 0.0139 (4) | −0.0026 (4) | 0.0078 (3) | 0.0013 (3) |
| C19 | 0.0170 (4) | 0.0177 (4) | 0.0144 (4) | −0.0033 (3) | 0.0066 (3) | 0.0008 (3) |
| C20 | 0.0203 (5) | 0.0254 (5) | 0.0134 (4) | −0.0004 (4) | 0.0040 (4) | −0.0004 (3) |
| S1—C9 | 1.7315 (10) | C4—H4A | 0.9300 |
| S1—C10 | 1.8196 (10) | C5—C6 | 1.4079 (14) |
| O1—N7 | 1.3756 (12) | C5—H5A | 0.9300 |
| O1—C13 | 1.4093 (13) | C7—C8 | 1.4924 (14) |
| O2—C13 | 1.2177 (12) | C7—H7A | 0.9700 |
| N1—C6 | 1.3855 (12) | C7—H7B | 0.9700 |
| N1—C7 | 1.4479 (13) | C10—C11 | 1.5079 (14) |
| N1—H1 | 0.8621 | C10—H10A | 0.9700 |
| N2—C8 | 1.3097 (13) | C10—H10B | 0.9700 |
| N2—N3 | 1.4075 (12) | C11—C12 | 1.4511 (14) |
| N3—C9 | 1.3106 (13) | C12—C13 | 1.4226 (13) |
| N4—C8 | 1.3751 (12) | C14—C15 | 1.3851 (15) |
| N4—C9 | 1.3790 (12) | C14—C19 | 1.3893 (14) |
| N4—N5 | 1.3814 (11) | C15—C16 | 1.3941 (15) |
| N5—C11 | 1.2943 (12) | C15—H15A | 0.9300 |
| N6—N7 | 1.3063 (12) | C16—C17 | 1.3968 (15) |
| N6—C12 | 1.3605 (13) | C16—H16A | 0.9300 |
| N6—C14 | 1.4491 (12) | C17—C18 | 1.4013 (15) |
| C1—C2 | 1.3983 (14) | C17—C20 | 1.5075 (14) |
| C1—C6 | 1.3999 (14) | C18—C19 | 1.3914 (13) |
| C1—H1A | 0.9300 | C18—H18A | 0.9300 |
| C2—C3 | 1.3904 (16) | C19—H19A | 0.9300 |
| C2—H2A | 0.9300 | C20—H20A | 0.9600 |
| C3—C4 | 1.3998 (16) | C20—H20B | 0.9600 |
| C3—H3A | 0.9300 | C20—H20C | 0.9600 |
| C4—C5 | 1.3861 (14) | ||
| C9—S1—C10 | 95.43 (5) | N3—C9—N4 | 110.58 (8) |
| N7—O1—C13 | 110.89 (8) | N3—C9—S1 | 128.39 (8) |
| C6—N1—C7 | 121.96 (8) | N4—C9—S1 | 120.71 (7) |
| C6—N1—H1 | 117.3 | C11—C10—S1 | 112.54 (7) |
| C7—N1—H1 | 116.9 | C11—C10—H10A | 109.1 |
| C8—N2—N3 | 108.22 (8) | S1—C10—H10A | 109.1 |
| C9—N3—N2 | 106.42 (8) | C11—C10—H10B | 109.1 |
| C8—N4—C9 | 105.18 (8) | S1—C10—H10B | 109.1 |
| C8—N4—N5 | 123.82 (8) | H10A—C10—H10B | 107.8 |
| C9—N4—N5 | 129.05 (8) | N5—C11—C12 | 116.74 (9) |
| C11—N5—N4 | 115.69 (8) | N5—C11—C10 | 124.96 (9) |
| N7—N6—C12 | 114.83 (8) | C12—C11—C10 | 118.28 (8) |
| N7—N6—C14 | 115.79 (8) | N6—C12—C13 | 105.37 (9) |
| C12—N6—C14 | 129.26 (8) | N6—C12—C11 | 126.59 (8) |
| N6—N7—O1 | 104.84 (8) | C13—C12—C11 | 127.41 (9) |
| C2—C1—C6 | 120.04 (10) | O2—C13—O1 | 120.33 (9) |
| C2—C1—H1A | 120.0 | O2—C13—C12 | 135.62 (10) |
| C6—C1—H1A | 120.0 | O1—C13—C12 | 104.05 (8) |
| C3—C2—C1 | 121.08 (10) | C15—C14—C19 | 122.95 (9) |
| C3—C2—H2A | 119.5 | C15—C14—N6 | 118.54 (9) |
| C1—C2—H2A | 119.5 | C19—C14—N6 | 118.50 (9) |
| C2—C3—C4 | 118.79 (10) | C14—C15—C16 | 118.04 (10) |
| C2—C3—H3A | 120.6 | C14—C15—H15A | 121.0 |
| C4—C3—H3A | 120.6 | C16—C15—H15A | 121.0 |
| C5—C4—C3 | 120.77 (10) | C15—C16—C17 | 121.14 (10) |
| C5—C4—H4A | 119.6 | C15—C16—H16A | 119.4 |
| C3—C4—H4A | 119.6 | C17—C16—H16A | 119.4 |
| C4—C5—C6 | 120.51 (9) | C16—C17—C18 | 118.74 (9) |
| C4—C5—H5A | 119.7 | C16—C17—C20 | 121.11 (10) |
| C6—C5—H5A | 119.7 | C18—C17—C20 | 120.13 (9) |
| N1—C6—C1 | 122.34 (9) | C19—C18—C17 | 121.34 (9) |
| N1—C6—C5 | 118.82 (9) | C19—C18—H18A | 119.3 |
| C1—C6—C5 | 118.81 (9) | C17—C18—H18A | 119.3 |
| N1—C7—C8 | 108.80 (8) | C14—C19—C18 | 117.77 (10) |
| N1—C7—H7A | 109.9 | C14—C19—H19A | 121.1 |
| C8—C7—H7A | 109.9 | C18—C19—H19A | 121.1 |
| N1—C7—H7B | 109.9 | C17—C20—H20A | 109.5 |
| C8—C7—H7B | 109.9 | C17—C20—H20B | 109.5 |
| H7A—C7—H7B | 108.3 | H20A—C20—H20B | 109.5 |
| N2—C8—N4 | 109.59 (8) | C17—C20—H20C | 109.5 |
| N2—C8—C7 | 125.84 (9) | H20A—C20—H20C | 109.5 |
| N4—C8—C7 | 124.51 (9) | H20B—C20—H20C | 109.5 |
| C8—N2—N3—C9 | −0.32 (11) | C9—S1—C10—C11 | 46.28 (8) |
| C8—N4—N5—C11 | −172.93 (9) | N4—N5—C11—C12 | −177.38 (8) |
| C9—N4—N5—C11 | 25.42 (14) | N4—N5—C11—C10 | 4.59 (14) |
| C12—N6—N7—O1 | −1.21 (12) | S1—C10—C11—N5 | −43.10 (12) |
| C14—N6—N7—O1 | −177.58 (8) | S1—C10—C11—C12 | 138.89 (8) |
| C13—O1—N7—N6 | 1.44 (11) | N7—N6—C12—C13 | 0.52 (12) |
| C6—C1—C2—C3 | −0.22 (17) | C14—N6—C12—C13 | 176.30 (9) |
| C1—C2—C3—C4 | 0.11 (17) | N7—N6—C12—C11 | 171.94 (9) |
| C2—C3—C4—C5 | 0.03 (17) | C14—N6—C12—C11 | −12.28 (16) |
| C3—C4—C5—C6 | −0.06 (17) | N5—C11—C12—N6 | −17.48 (15) |
| C7—N1—C6—C1 | −8.93 (16) | C10—C11—C12—N6 | 160.69 (9) |
| C7—N1—C6—C5 | 172.89 (10) | N5—C11—C12—C13 | 152.08 (10) |
| C2—C1—C6—N1 | −177.99 (11) | C10—C11—C12—C13 | −29.75 (15) |
| C2—C1—C6—C5 | 0.19 (16) | N7—O1—C13—O2 | 178.77 (9) |
| C4—C5—C6—N1 | 178.20 (10) | N7—O1—C13—C12 | −1.14 (11) |
| C4—C5—C6—C1 | −0.05 (16) | N6—C12—C13—O2 | −179.49 (12) |
| C6—N1—C7—C8 | −166.77 (10) | C11—C12—C13—O2 | 9.2 (2) |
| N3—N2—C8—N4 | 0.91 (11) | N6—C12—C13—O1 | 0.39 (10) |
| N3—N2—C8—C7 | 178.01 (9) | C11—C12—C13—O1 | −170.93 (9) |
| C9—N4—C8—N2 | −1.12 (11) | N7—N6—C14—C15 | −55.54 (13) |
| N5—N4—C8—N2 | −166.45 (9) | C12—N6—C14—C15 | 128.71 (11) |
| C9—N4—C8—C7 | −178.27 (9) | N7—N6—C14—C19 | 123.23 (10) |
| N5—N4—C8—C7 | 16.41 (15) | C12—N6—C14—C19 | −52.52 (14) |
| N1—C7—C8—N2 | 40.77 (14) | C19—C14—C15—C16 | −0.75 (16) |
| N1—C7—C8—N4 | −142.55 (10) | N6—C14—C15—C16 | 177.97 (10) |
| N2—N3—C9—N4 | −0.40 (11) | C14—C15—C16—C17 | −0.28 (17) |
| N2—N3—C9—S1 | 173.15 (8) | C15—C16—C17—C18 | 1.25 (17) |
| C8—N4—C9—N3 | 0.92 (11) | C15—C16—C17—C20 | −177.10 (11) |
| N5—N4—C9—N3 | 165.20 (9) | C16—C17—C18—C19 | −1.25 (16) |
| C8—N4—C9—S1 | −173.20 (7) | C20—C17—C18—C19 | 177.12 (10) |
| N5—N4—C9—S1 | −8.92 (14) | C15—C14—C19—C18 | 0.75 (15) |
| C10—S1—C9—N3 | 161.54 (10) | N6—C14—C19—C18 | −177.96 (9) |
| C10—S1—C9—N4 | −25.49 (9) | C17—C18—C19—C14 | 0.28 (15) |
| H··· | ||||
| C10—H10A···O2 | 0.97 | 2.40 | 3.1654 (14) | 136 |
| N1—H1···O2i | 0.86 | 2.20 | 3.0218 (11) | 160 |
| C18—H18A···N2ii | 0.93 | 2.62 | 3.4246 (14) | 145 |
| C15—H15A···Cg1iii | 0.93 | 2.73 | 3.5537 (14) | 148 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C1–C6 phenyl ring.
| H⋯ | ||||
|---|---|---|---|---|
| C10—H10 | 0.97 | 2.40 | 3.1654 (14) | 136 |
| N1—H1⋯O2i | 0.86 | 2.20 | 3.0218 (11) | 160 |
| C18—H18 | 0.93 | 2.62 | 3.4246 (14) | 145 |
| C15—H15 | 0.93 | 2.73 | 3.5537 (14) | 148 |
Symmetry codes: (i) ; (ii) ; (iii) .