Literature DB >> 22065480

5-Hy-droxy-3-methyl-5-phenyl-4,5-di-hydro-1H-pyrazole-1-carbothio-amide.

Biplab Ganguly, Ana Foi, Fabio Doctorovich, Benu K Dey, Tapashi G Roy.   

Abstract

In the title compound C(11)H(13)N(3)OS, the aromatic ring and the n class="Chemical">dihydro-pyrazole ring are oriented orthogonally with respect to each other, making a dihedral angle of 89.92 (9)°. An intra-molecular O-H⋯S hydrogen bond occurs. In the crystal, weak N-H⋯N and N-H⋯S hydrogen bonds link the mol-ecules into a columnar stack propagating along the b axis.

Entities:  

Year:  2011        PMID: 22065480      PMCID: PMC3201317          DOI: 10.1107/S1600536811036658

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of sulfurnitro­gen ligand compounds, see: Wilder Smith (1964 ▶); Grii & Khare (1976 ▶); French & Blang (1966 ▶); Davis Parke & Co (1957 ▶); Vattum & Rao (1959 ▶); Brockaman et al. (1959 ▶). For the carcinostatics thio­semicarbazone-containing nitro­gen heterocycles, see: Freedlander & French (1958 ▶); French & Blang (1965 ▶).

Experimental

Crystal data

C11H13N3OS M = 235.31 Monoclinic, a = 11.6955 (6) Å b = 7.6889 (4) Å c = 13.7588 (10) Å β = 111.978 (7)° V = 1147.35 (12) Å3 Z = 4 Mo Kα radiation μ = 0.26 mm−1 T = 298 K 0.39 × 0.41 × 0.43 mm

Data collection

Oxford Diffraction Gemini E CCD diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.541, T max = 1.000 19392 measured reflections 2326 independent reflections 2161 reflections with I > 2σ(I) R int = 0.069

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.130 S = 1.07 2326 reflections 157 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.27 e Å−3 Δρmin = −0.35 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS86 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1999 ▶); software used to prepare material for publication: WinGX publication routines (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811036658/ds2131sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811036658/ds2131Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811036658/ds2131Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H13N3OSF(000) = 496
Mr = 235.31Dx = 1.362 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 10287 reflections
a = 11.6955 (6) Åθ = 3.5–73.8°
b = 7.6889 (4) ŵ = 0.26 mm1
c = 13.7588 (10) ÅT = 298 K
β = 111.978 (7)°Prism, white
V = 1147.35 (12) Å30.43 × 0.41 × 0.39 mm
Z = 4
Oxford Diffraction Gemini E CCD diffractometer2161 reflections with I > 2σ(I)
graphiteRint = 0.069
ω scans, thick slicesθmax = 26.3°, θmin = 1.9°
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)h = −14→14
Tmin = 0.541, Tmax = 1.000k = −9→9
19392 measured reflectionsl = −17→16
2326 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.130H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0808P)2 + 0.2816P] where P = (Fo2 + 2Fc2)/3
2326 reflections(Δ/σ)max < 0.001
157 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.35 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.38340 (12)0.44242 (18)0.08551 (10)0.0382 (3)
O10.09679 (11)0.29274 (18)0.04417 (11)0.0503 (3)
N30.47610 (13)0.1959 (2)0.22717 (13)0.0479 (4)
C110.36034 (14)0.1729 (2)0.16030 (12)0.0370 (3)
C100.36242 (19)0.7124 (2)−0.00962 (16)0.0541 (5)
H10C0.44690.72730.03630.081*
H10A0.31380.80580.00080.081*
H10B0.35680.7128−0.0810.081*
N20.31423 (12)0.29247 (17)0.08476 (10)0.0392 (3)
H3B0.504 (2)0.124 (3)0.2795 (18)0.054 (6)*
H3A0.521 (2)0.286 (3)0.2218 (18)0.060 (6)*
H1O0.114 (2)0.194 (4)0.086 (2)0.068 (7)*
S10.27587 (4)0.00137 (5)0.17302 (3)0.04557 (19)
C60.17249 (13)0.1559 (2)−0.08034 (12)0.0379 (3)
C90.31586 (15)0.5446 (2)0.01356 (12)0.0396 (4)
C70.18692 (14)0.2977 (2)0.00036 (13)0.0399 (4)
C80.18774 (17)0.4804 (2)−0.04428 (16)0.0489 (4)
H8A0.16940.4756−0.11910.059*
H8B0.12780.5551−0.03170.059*
C10.07051 (15)0.0470 (2)−0.11386 (13)0.0444 (4)
H20.01190.0557−0.08350.053*
C30.1390 (2)−0.0863 (3)−0.23965 (14)0.0559 (5)
H40.1277−0.1666−0.2930.067*
C50.25740 (16)0.1420 (2)−0.12829 (14)0.0476 (4)
H60.32630.214−0.1070.057*
C20.05503 (17)−0.0744 (3)−0.19207 (14)0.0527 (5)
H3−0.0128−0.1484−0.21250.063*
C40.2406 (2)0.0223 (3)−0.20755 (17)0.0557 (5)
H50.2980.0149−0.23940.067*
U11U22U33U12U13U23
N10.0370 (7)0.0349 (7)0.0363 (7)−0.0034 (5)0.0064 (5)0.0002 (5)
O10.0396 (6)0.0545 (8)0.0526 (7)0.0057 (5)0.0122 (5)−0.0049 (6)
N30.0386 (7)0.0435 (8)0.0461 (8)0.0001 (6)−0.0018 (6)0.0117 (6)
C110.0363 (7)0.0343 (7)0.0348 (7)0.0028 (6)0.0068 (6)−0.0003 (6)
C100.0601 (11)0.0424 (9)0.0524 (10)−0.0035 (8)0.0127 (9)0.0093 (8)
N20.0341 (6)0.0336 (7)0.0376 (7)−0.0028 (5)−0.0007 (5)0.0029 (5)
S10.0429 (3)0.0374 (3)0.0500 (3)−0.00315 (15)0.0100 (2)0.00632 (16)
C60.0337 (7)0.0356 (7)0.0349 (8)0.0001 (6)0.0021 (6)0.0054 (6)
C90.0431 (8)0.0352 (7)0.0344 (8)0.0013 (6)0.0077 (6)−0.0005 (6)
C70.0318 (7)0.0365 (8)0.0398 (8)0.0019 (6)0.0002 (6)0.0022 (6)
C80.0436 (9)0.0357 (8)0.0491 (10)0.0028 (6)−0.0036 (8)0.0045 (7)
C10.0366 (8)0.0482 (9)0.0399 (9)−0.0050 (7)0.0046 (6)0.0004 (7)
C30.0708 (12)0.0495 (10)0.0395 (9)0.0022 (9)0.0116 (8)−0.0033 (8)
C50.0452 (8)0.0446 (9)0.0511 (10)−0.0049 (7)0.0161 (7)0.0040 (8)
C20.0511 (9)0.0516 (10)0.0428 (9)−0.0108 (8)0.0031 (7)−0.0042 (8)
C40.0659 (12)0.0559 (11)0.0502 (10)0.0065 (9)0.0273 (10)0.0070 (8)
N1—C91.279 (2)C6—C51.387 (2)
N1—N21.4062 (18)C6—C71.520 (2)
O1—C71.397 (2)C9—C81.493 (2)
O1—H1O0.93 (3)C7—C81.535 (2)
N3—C111.334 (2)C8—H8A0.97
N3—H3B0.87 (2)C8—H8B0.97
N3—H3A0.89 (3)C1—C21.384 (3)
C11—N21.340 (2)C1—H20.93
C11—S11.6958 (16)C3—C21.373 (3)
C10—C91.481 (2)C3—C41.382 (3)
C10—H10C0.96C3—H40.93
C10—H10A0.96C5—C41.384 (3)
C10—H10B0.96C5—H60.93
N2—C71.5077 (18)C2—H30.93
C6—C11.387 (2)C4—H50.93
C9—N1—N2108.12 (12)N2—C7—C6110.55 (12)
C7—O1—H1O105.7 (15)O1—C7—C8108.45 (14)
C11—N3—H3B117.4 (14)N2—C7—C8100.40 (12)
C11—N3—H3A121.5 (15)C6—C7—C8112.34 (14)
H3B—N3—H3A121 (2)C9—C8—C7104.14 (13)
N3—C11—N2116.99 (15)C9—C8—H8A110.9
N3—C11—S1120.81 (13)C7—C8—H8A110.9
N2—C11—S1122.18 (11)C9—C8—H8B110.9
C9—C10—H10C109.5C7—C8—H8B110.9
C9—C10—H10A109.5H8A—C8—H8B108.9
H10C—C10—H10A109.5C2—C1—C6120.76 (17)
C9—C10—H10B109.5C2—C1—H2119.6
H10C—C10—H10B109.5C6—C1—H2119.6
H10A—C10—H10B109.5C2—C3—C4119.37 (18)
C11—N2—N1119.56 (12)C2—C3—H4120.3
C11—N2—C7127.61 (13)C4—C3—H4120.3
N1—N2—C7112.54 (12)C4—C5—C6120.67 (17)
C1—C6—C5118.38 (16)C4—C5—H6119.7
C1—C6—C7121.50 (15)C6—C5—H6119.7
C5—C6—C7119.93 (14)C3—C2—C1120.45 (17)
N1—C9—C10122.10 (15)C3—C2—H3119.8
N1—C9—C8114.56 (15)C1—C2—H3119.8
C10—C9—C8123.34 (15)C3—C4—C5120.35 (19)
O1—C7—N2110.74 (13)C3—C4—H5119.8
O1—C7—C6113.58 (13)C5—C4—H5119.8
N3—C11—N2—N1−6.3 (2)C5—C6—C7—N2−53.08 (19)
S1—C11—N2—N1172.51 (12)C1—C6—C7—C8−116.66 (17)
N3—C11—N2—C7−179.61 (16)C5—C6—C7—C858.17 (19)
S1—C11—N2—C7−0.8 (2)N1—C9—C8—C7−4.7 (2)
C9—N1—N2—C11−173.10 (14)C10—C9—C8—C7175.24 (16)
C9—N1—N2—C71.16 (18)O1—C7—C8—C9120.77 (15)
N2—N1—C9—C10−177.61 (15)N2—C7—C8—C94.61 (18)
N2—N1—C9—C82.3 (2)C6—C7—C8—C9−112.86 (15)
C11—N2—C7—O155.5 (2)C5—C6—C1—C21.1 (2)
N1—N2—C7—O1−118.22 (15)C7—C6—C1—C2175.99 (15)
C11—N2—C7—C6−71.3 (2)C1—C6—C5—C4−0.1 (3)
N1—N2—C7—C6115.00 (14)C7—C6—C5—C4−175.07 (16)
C11—N2—C7—C8169.90 (16)C4—C3—C2—C11.1 (3)
N1—N2—C7—C8−3.79 (18)C6—C1—C2—C3−1.6 (3)
C1—C6—C7—O16.9 (2)C2—C3—C4—C5−0.1 (3)
C5—C6—C7—O1−178.28 (14)C6—C5—C4—C3−0.4 (3)
C1—C6—C7—N2132.09 (15)
D—H···AD—HH···AD···AD—H···A
O1—H1O···S10.93 (3)2.35 (3)3.1256 (15)141 (2)
N3—H3A···S1i0.89 (2)2.81 (2)3.5827 (17)145.9 (19)
N3—H3B···N1ii0.87 (2)2.30 (2)3.158 (2)168 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O⋯S10.93 (3)2.35 (3)3.1256 (15)141 (2)
N3—H3A⋯S1i0.89 (2)2.81 (2)3.5827 (17)145.9 (19)
N3—H3B⋯N1ii0.87 (2)2.30 (2)3.158 (2)168 (2)

Symmetry codes: (i) ; (ii) .

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