Literature DB >> 22065467

rac-(6S)-6-Hy-droxy-6-{2-[2-(propan-2-yl-idene)hydrazinyl-idene]prop-yl}indolo[2,1-b]quinazolin-12(6H)-one.

Matthew E Rodstein1, Paul D Steffen, Bogdana Krivogorsky, Peter Grundt.   

Abstract

The chiral title compound, C(21)H(20)N(4)O(2), crystallizes as a racemic mixture. In the crystal, mol-ecules form centrosymmetric π-overlapping dimers [inter-planar distance = 3.338 (6) Å], which are further connected along the a axis forming centrosymmetric dimers via O-H⋯N hydrogen bonds. C-H⋯O inter-actions are also observed. The indolo[2,1-b]quinazoline group is somewhat bent, with a small dihedral angle of 6.3 (4)° between the plane of the quinazoline system and the plane of the benzene ring of the indole moiety. The C=N-N=C atoms of the azine group is oriented almost perpendicular [84.1 (2)°] to the mean plane of the quinazoline system.

Entities:  

Year:  2011        PMID: 22065467      PMCID: PMC3201358          DOI: 10.1107/S1600536811037408

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound is a derivative of the natural product tryptanthrin (indolo[2,1-b]quinazoline-6,12-dione). For reactions occurring at the 6-keto group of tryptanthrin with nucleophiles including CH-acidic compounds, see: Grandolini et al. (1997 ▶); Bergman & Tilstam (1985 ▶); Jao et al. (2008 ▶); Zou & Huang (1985 ▶). For related strutures, see: Brufani et al. (1971 ▶); Bergman et al. (1987 ▶); Jao et al. (2008 ▶); Grundt et al. (2010 ▶). For the Chebychev weighting scheme, see: Prince (1982 ▶); Watkin (1994 ▶).

Experimental

Crystal data

C21H20N4O2 M = 360.42 Monoclinic, a = 8.6788 (17) Å b = 15.117 (3) Å c = 13.283 (3) Å β = 99.58 (3)° V = 1718.4 (6) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.20 × 0.20 × 0.20 mm

Data collection

Rigaku R-AXIS RAPID II image-plate diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.98, T max = 0.98 11165 measured reflections 2914 independent reflections 1850 reflections with I > 2σ(I) R int = 0.096

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.161 S = 1.01 2899 reflections 244 parameters Only H-atom displacement parameters refined Δρmax = 0.59 e Å−3 Δρmin = −0.48 e Å−3 Data collection: CrystalClear (Rigaku Americas, 2009 ▶); cell refinement: HKL-2000 (Otwinowski & Minor, 1997 ▶); data reduction: CrystalClear; program(s) used to solve structure: CrystalStructure (Rigaku Americas, 2009 ▶) and SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003 ▶); molecular graphics: CAMERON (Watkin et al., 1996 ▶); software used to prepare material for publication: CRYSTALS. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811037408/ld2027sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811037408/ld2027Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811037408/ld2027Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H20N4O2F(000) = 760
Mr = 360.42Dx = 1.393 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1820 reflections
a = 8.6788 (17) Åθ = 25–2°
b = 15.117 (3) ŵ = 0.09 mm1
c = 13.283 (3) ÅT = 100 K
β = 99.58 (3)°Block, colourless
V = 1718.4 (6) Å30.20 × 0.20 × 0.20 mm
Z = 4
Rigaku R-AXIS RAPID II image-plate diffractometer2914 independent reflections
Radiation source: Mo Sealed tube tube1850 reflections with I > 2σ(I)
graphiteRint = 0.096
Detector resolution: 10 pixels mm-1θmax = 24.7°, θmin = 3.1°
ω/2θ scansh = −10→9
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −17→17
Tmin = 0.98, Tmax = 0.98l = −14→15
11165 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.062Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.161Only H-atom displacement parameters refined
S = 1.01 Method, part 1, Chebychev polynomial,(Watkin, 1994; Prince, 1982) [weight] = 1.0/[A0*T0(x) + A1*T1(x) ··· + An-1]*Tn-1(x)] where Ai are the Chebychev coefficients listed below and x = F /Fmax Method = Robust Weighting (Prince, 1982) W = [weight] * [1-(deltaF/6*sigmaF)2]2 Ai are: 5.56 6.74 1.72
2899 reflections(Δ/σ)max = 0.0001471
244 parametersΔρmax = 0.59 e Å3
0 restraintsΔρmin = −0.48 e Å3
13 constraints
Experimental. 1H NMR (DMSO-d6, 500 MHz): δ 0.82 (s, 3H), 1.63 (s, 6H), 3.38 (d, J 16.6, 1H), 3.44 (d, J 16.5, 1H), 6.88 (s, 1H), 7.35 (t, J 7.3, 1H), 7.46 (t, J 7.7, 1H), 7.59 (t, J 7.2, 1H), 7.62 (d, J 6.7, 1H), 7.78 (d, J 8.0, 1H), 7.87 (t, J 8.3, 1H), 8.28 (d, J 7.8, 1H), 8.39 (d, J 7.7, 1H). 13C NMR (DMSO-d6, 125 MHz): δ 16.5, 17.3, 24.3, 45.5, 75.3, 115.9, 121.2, 123.4, 126.2, 126.3, 127.0, 127.3, 129.2, 134.4, 134.6, 139.2, 147.2, 157.6, 158.9, 159.0, 161.2.
Refinement. Crystals for Windows program eliminates all reflections with [sinθ/λ]2 < 0.01 in order to eliminate reflections that may be poorly measured in the vicinity of the beam stop. Such filter eliminated 15 reflections, which resulted in difference between 2914 measured unique reflections and 2899 reflections used for refinement.
xyzUiso*/Ueq
O190.8991 (3)0.37375 (18)0.4708 (2)0.0293
C60.8330 (4)0.4137 (3)0.3753 (3)0.0247
C140.7388 (4)0.4957 (2)0.3956 (3)0.0236
N110.5809 (3)0.4758 (2)0.3731 (2)0.0246
C160.5590 (4)0.3890 (2)0.3310 (3)0.0244
C150.7034 (4)0.3519 (3)0.3277 (3)0.0252
C70.7135 (5)0.2688 (3)0.2869 (3)0.0333
C80.5753 (5)0.2223 (3)0.2529 (3)0.0340
C90.4329 (5)0.2595 (3)0.2605 (3)0.0344
C100.4209 (5)0.3440 (3)0.2997 (3)0.0310
C120.4659 (4)0.5369 (3)0.3857 (3)0.0259
O180.3266 (3)0.51841 (19)0.3656 (2)0.0338
C170.5287 (4)0.6229 (3)0.4227 (3)0.0252
C130.6913 (4)0.6366 (3)0.4431 (3)0.0258
N50.7978 (3)0.5697 (2)0.4294 (2)0.0260
C40.7479 (5)0.7207 (3)0.4739 (3)0.0312
C30.6455 (5)0.7880 (3)0.4861 (3)0.0356
C20.4848 (5)0.7732 (3)0.4689 (3)0.0348
C10.4268 (4)0.6917 (3)0.4381 (3)0.0294
C200.9621 (4)0.4328 (3)0.3137 (3)0.0272
C210.9162 (4)0.4779 (2)0.2122 (3)0.0258
N230.7732 (4)0.4958 (2)0.1820 (2)0.0301
N240.7448 (4)0.5367 (2)0.0842 (3)0.0341
C250.6178 (5)0.5803 (3)0.0657 (3)0.0370
C270.5820 (5)0.6268 (3)−0.0346 (3)0.0413
C260.5009 (6)0.5914 (4)0.1369 (4)0.0487
C221.0477 (5)0.4992 (3)0.1570 (3)0.0363
H50.81170.24420.28220.0396*
H60.57850.16670.22600.0411*
H70.34030.22710.24070.0409*
H80.32450.36900.30400.0364*
H40.85600.73120.48770.0372*
H30.68550.84370.50510.0417*
H20.41500.81960.47860.0419*
H10.31810.68160.42800.0349*
H101.03970.47070.35420.0334*
H111.00970.37590.30190.0321*
H200.47680.6120−0.06750.0614*
H180.59150.6909−0.02450.0623*
H190.65530.6078−0.07790.0617*
H150.45650.65060.13150.0720*
H160.55160.58240.20690.0725*
H170.41790.54750.11940.0723*
H131.02320.48420.08670.0554*
H141.06730.56040.16190.0561*
H121.14150.46950.18480.0554*
H90.97930.40190.49250.0440*
U11U22U33U12U13U23
O190.0221 (13)0.0337 (15)0.0307 (15)−0.0019 (12)0.0004 (11)0.0048 (12)
C60.0199 (18)0.030 (2)0.0239 (19)0.0019 (16)0.0029 (15)0.0069 (16)
C140.0199 (18)0.029 (2)0.0214 (18)−0.0007 (15)0.0025 (14)0.0016 (16)
N110.0198 (15)0.0290 (17)0.0247 (16)−0.0018 (13)0.0028 (12)0.0013 (14)
C160.0276 (19)0.025 (2)0.0200 (18)−0.0013 (16)0.0023 (15)0.0037 (15)
C150.0254 (19)0.028 (2)0.0224 (19)−0.0033 (16)0.0051 (15)0.0065 (16)
C70.033 (2)0.031 (2)0.036 (2)0.0001 (18)0.0052 (17)0.0031 (18)
C80.039 (2)0.029 (2)0.034 (2)−0.0014 (18)0.0058 (18)−0.0013 (18)
C90.037 (2)0.036 (2)0.027 (2)−0.0116 (19)−0.0015 (17)0.0008 (18)
C100.026 (2)0.036 (2)0.030 (2)−0.0031 (17)0.0006 (16)0.0058 (18)
C120.023 (2)0.033 (2)0.0212 (19)−0.0011 (16)0.0028 (15)0.0003 (16)
O180.0193 (14)0.0423 (17)0.0384 (16)−0.0002 (12)0.0011 (12)−0.0022 (13)
C170.0224 (19)0.034 (2)0.0189 (18)0.0002 (16)0.0035 (14)0.0042 (16)
C130.0230 (19)0.030 (2)0.0244 (19)0.0033 (16)0.0049 (15)0.0058 (16)
N50.0210 (16)0.0290 (18)0.0278 (17)−0.0004 (14)0.0033 (13)0.0038 (14)
C40.026 (2)0.029 (2)0.039 (2)−0.0041 (17)0.0069 (17)0.0003 (18)
C30.038 (2)0.028 (2)0.040 (2)−0.0015 (18)0.0060 (19)−0.0028 (18)
C20.034 (2)0.035 (2)0.036 (2)0.0072 (19)0.0065 (18)0.0013 (19)
C10.0231 (19)0.035 (2)0.030 (2)0.0068 (17)0.0040 (16)0.0073 (17)
C200.0226 (19)0.028 (2)0.031 (2)0.0020 (16)0.0040 (16)0.0020 (16)
C210.028 (2)0.025 (2)0.0245 (19)0.0039 (16)0.0060 (16)−0.0017 (16)
N230.0278 (18)0.0352 (19)0.0271 (17)0.0024 (15)0.0042 (14)0.0050 (15)
N240.0301 (18)0.039 (2)0.0329 (19)0.0024 (16)0.0034 (15)0.0086 (16)
C250.034 (2)0.040 (2)0.037 (2)−0.004 (2)0.0052 (18)0.003 (2)
C270.037 (2)0.048 (3)0.037 (2)0.004 (2)0.0009 (19)0.008 (2)
C260.044 (3)0.058 (3)0.044 (3)0.011 (2)0.007 (2)0.004 (2)
C220.032 (2)0.043 (3)0.035 (2)0.0011 (19)0.0101 (18)−0.001 (2)
O19—C61.436 (4)C4—C31.379 (6)
O19—H90.826C4—H40.939
C6—C141.532 (5)C3—C21.393 (6)
C6—C151.518 (5)C3—H30.929
C6—C201.520 (5)C2—C11.367 (6)
C14—N111.386 (5)C2—H20.950
C14—N51.281 (5)C1—H10.942
N11—C161.426 (5)C20—C211.505 (5)
N11—C121.391 (5)C20—H100.975
C16—C151.380 (5)C20—H110.979
C16—C101.381 (5)C21—N231.268 (5)
C15—C71.377 (6)C21—C221.491 (5)
C7—C81.399 (6)N23—N241.423 (4)
C7—H50.941N24—C251.272 (5)
C8—C91.377 (6)C25—C271.493 (6)
C8—H60.916C25—C261.507 (6)
C9—C101.390 (6)C27—H200.971
C9—H70.941C27—H180.979
C10—H80.928C27—H190.969
C12—O181.226 (4)C26—H150.973
C12—C171.463 (5)C26—H160.970
C17—C131.408 (5)C26—H170.979
C17—C11.402 (5)C22—H130.950
C13—N51.401 (5)C22—H140.942
C13—C41.399 (5)C22—H120.948
C6—O19—H9106.3C3—C4—H4119.7
O19—C6—C14109.3 (3)C4—C3—C2120.6 (4)
O19—C6—C15105.5 (3)C4—C3—H3118.8
C14—C6—C15101.0 (3)C2—C3—H3120.6
O19—C6—C20109.4 (3)C3—C2—C1120.2 (4)
C14—C6—C20113.8 (3)C3—C2—H2120.2
C15—C6—C20117.0 (3)C1—C2—H2119.6
C6—C14—N11108.9 (3)C17—C1—C2120.1 (4)
C6—C14—N5125.1 (3)C17—C1—H1120.0
N11—C14—N5126.0 (3)C2—C1—H1119.9
C14—N11—C16110.3 (3)C6—C20—C21117.3 (3)
C14—N11—C12122.3 (3)C6—C20—H10108.6
C16—N11—C12127.4 (3)C21—C20—H10106.4
N11—C16—C15108.9 (3)C6—C20—H11106.8
N11—C16—C10128.6 (4)C21—C20—H11108.1
C15—C16—C10122.5 (4)H10—C20—H11109.6
C6—C15—C16110.5 (3)C20—C21—N23118.6 (3)
C6—C15—C7129.4 (4)C20—C21—C22115.4 (3)
C16—C15—C7120.1 (4)N23—C21—C22126.0 (4)
C15—C7—C8118.5 (4)C21—N23—N24113.2 (3)
C15—C7—H5120.3N23—N24—C25114.4 (3)
C8—C7—H5121.2N24—C25—C27117.4 (4)
C7—C8—C9120.2 (4)N24—C25—C26126.1 (4)
C7—C8—H6120.4C27—C25—C26116.5 (4)
C9—C8—H6119.3C25—C27—H20109.5
C8—C9—C10121.8 (4)C25—C27—H18110.1
C8—C9—H7120.1H20—C27—H18109.9
C10—C9—H7118.0C25—C27—H19109.3
C9—C10—C16116.7 (4)H20—C27—H19109.0
C9—C10—H8121.4H18—C27—H19109.0
C16—C10—H8121.9C25—C26—H15110.9
N11—C12—O18121.6 (4)C25—C26—H16109.9
N11—C12—C17113.4 (3)H15—C26—H16108.1
O18—C12—C17125.0 (4)C25—C26—H17108.7
C12—C17—C13120.0 (3)H15—C26—H17109.8
C12—C17—C1120.0 (3)H16—C26—H17109.4
C13—C17—C1120.0 (4)C21—C22—H13111.6
C17—C13—N5122.1 (4)C21—C22—H14108.7
C17—C13—C4118.8 (3)H13—C22—H14108.1
N5—C13—C4119.1 (3)C21—C22—H12112.6
C13—N5—C14116.3 (3)H13—C22—H12107.9
C13—C4—C3120.2 (4)H14—C22—H12107.8
C13—C4—H4120.1
D—H···AD—HH···AD···AD—H···A
C20—H10···O18i0.982.573.381 (6)140.(1)
O19—H9···N5ii0.832.082.872 (6)160.(1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C20—H10⋯O18i0.982.573.381 (6)140 (1)
O19—H9⋯N5ii0.832.082.872 (6)160 (1)

Symmetry codes: (i) ; (ii) .

  5 in total

1.  Synthesis and antimicrobial activity of some new derivatives of 6,12-dihydroindolo[2,1-b]quinazolin-6,12-dione.

Authors:  G Grandolini; V Ambrogi; L Perioli; M Giannangeli; L Jovicevic; V Rossi
Journal:  Farmaco       Date:  1997-11

2.  The structure of tryptanthrin.

Authors:  M Brufani; W Fedeli; F Mazza; A Gerhard; W Keller-Schierlein
Journal:  Experientia       Date:  1971

3.  [Minor constituents of qing dai, a traditional Chinese medicine. I. Isolation, structural determination and synthesis of tryptanthrin and qingdainone].

Authors:  J C Zou; L Huang
Journal:  Yao Xue Xue Bao       Date:  1985-01

4.  7,9-Dichloro-6H,12H-indolo[2,1-b]quinazoline-6,12-dione.

Authors:  Peter Grundt; Kelsi A Douglas; Bogdana Krivogorsky; Victor N Nemykin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-29

5.  Isolation, structure elucidation, and synthesis of cytotoxic tryptanthrin analogues from Phaius mishmensis.

Authors:  Chen-Wei Jao; Wei-Chih Lin; Yao-Ting Wu; Pei-Lin Wu
Journal:  J Nat Prod       Date:  2008-05-29       Impact factor: 4.050

  5 in total

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