Literature DB >> 21579542

7,9-Dichloro-6H,12H-indolo[2,1-b]quinazoline-6,12-dione.

Peter Grundt1, Kelsi A Douglas, Bogdana Krivogorsky, Victor N Nemykin.   

Abstract

There are two independent mol-ecules in the asymmetric unit of the title compound, C(15)H(6)Cl(2)N(2)O(2). The conjugated four-ring system is essentially planar in each mol-ecule [maximum deviation = 0.089 (2) Å]. In the crystal, weak inter-molecular C-H⋯Cl, C-H⋯O and C-H⋯·N inter-actions help to stabilize the packing.

Entities:  

Year:  2010        PMID: 21579542      PMCID: PMC2979507          DOI: 10.1107/S1600536810018969

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, chemistry, and biological activity of the title compound see: Krivogorsky et al. (2008 ▶). For chemistry and biological activity of the natural product tryptanthrin (indolo[2,1-b]quinazoline-6,12-dione) and its derivatives and for related structures, see: Honda et al. (1979 ▶); Mitscher & Baker (1998 ▶); Kataoka et al. (2001 ▶); Bandekar et al. (2010 ▶); Sharma et al. (2002 ▶); Motoki et al. (2005 ▶); Yu et al. (2009 ▶); Bhattacharjee et al. (2002 ▶); Scovill et al. (2002 ▶); Bhattacharjee et al. (2004 ▶); Pitzer et al. (2000 ▶). For the extinction correction, see: Larson (1970 ▶).

Experimental

Crystal data

C15H6Cl2N2O2 M = 317.13 Triclinic, a = 7.0179 (2) Å b = 10.7276 (3) Å c = 17.2338 (12) Å α = 94.908 (7)° β = 96.709 (7)° γ = 107.395 (8)° V = 1219.66 (12) Å3 Z = 4 Mo Kα radiation μ = 0.54 mm−1 T = 100 K 0.54 × 0.48 × 0.35 mm

Data collection

Rigaku R-AXIS RAPID-II imaging plate diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.633, T max = 0.899 31502 measured reflections 5585 independent reflections 4830 reflections with I > 2σ(I) R int = 0.049

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.082 S = 1.00 5571 reflections 416 parameters 84 restraints All H-atom parameters refined Δρmax = 0.53 e Å−3 Δρmin = −0.36 e Å−3 Data collection: CrystalClear (Rigaku Americas, 2009 ▶); cell refinement: HKL-2000 (Otwinowski & Minor, 1997 ▶); data reduction: CrystalClear; program(s) used to solve structure: SHELXS86 (Sheldrick, 2008 ▶); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003 ▶); molecular graphics: CAMERON (Watkin et al., 1996 ▶); software used to prepare material for publication: CRYSTALS. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810018969/jj2032sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810018969/jj2032Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H6Cl2N2O2Z = 4
Mr = 317.13F(000) = 640
Triclinic, P1Dx = 1.727 Mg m3
Hall symbol: -P 1Melting point: 200 K
a = 7.0179 (2) ÅMo Kα radiation, λ = 0.71075 Å
b = 10.7276 (3) ÅCell parameters from 28356 reflections
c = 17.2338 (12) Åθ = 3.1–27.5°
α = 94.908 (7)°µ = 0.54 mm1
β = 96.709 (7)°T = 100 K
γ = 107.395 (8)°Block, yellow
V = 1219.66 (12) Å30.54 × 0.48 × 0.35 mm
Rigaku R-AXIS RAPID-II imaging plate diffractometer5585 independent reflections
Radiation source: Sealed tube (Mo)4830 reflections with I > 2σ(I)
graphiteRint = 0.049
Detector resolution: 10 pixels mm-1θmax = 27.5°, θmin = 3.1°
ω scansh = −9→9
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −13→13
Tmin = 0.633, Tmax = 0.899l = −22→22
31502 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.034All H-atom parameters refined
wR(F2) = 0.082 Method = Modified Sheldrick w = 1/[σ2(F2) + (0.02P)2 + 2.09P], where P = [max(Fo2,0) + 2Fc2]/3
S = 1.00(Δ/σ)max = 0.001
5571 reflectionsΔρmax = 0.53 e Å3
416 parametersΔρmin = −0.36 e Å3
84 restraintsExtinction correction: Larson (1970), Equation 22
0 constraintsExtinction coefficient: 43 (4)
Primary atom site location: structure-invariant direct methods
Experimental. The crystal was placed in the cold stream of an X-stream 2000 liquid nitrogen generator with open-flow nitrogen cryostat with a nominal stability of 0.1 K. 1H NMR (DMSO-d6, 500 MHz): d 7.75-7.78 (m, 2H), 7.98-8.00 (m, 2H), 8.33 (d, J 7.5, 1H), 8.41 (d, J 1.9, 1H). 13C NMR (DMSO-d6, 125 MHz): d 115.6, 118.3, 122.6, 127.0, 127.4, 129.9, 130.1, 132.3, 135.6, 141.6, 144.4, 146.1, 147.3, 157.6, 178.4.
Refinement. Crystals for Windows program eliminates all reflections with [Sin theta/lambda]**2 less than 0.01 in order to eliminate reflections that may be poorly measured in the vicinity of the beam stop. Such filter eliminated 14 reflections, which resulted in difference between 5585 measured unique reflections and 5571 reflections used for refinement.
xyzUiso*/Ueq
Cl1A0.12767 (7)0.19849 (5)−0.30745 (3)0.0154
Cl2A0.22470 (8)−0.16786 (5)−0.51632 (3)0.0203
O1A0.5092 (2)0.25603 (14)−0.16905 (8)0.0172
O2A0.8111 (2)−0.15104 (14)−0.30107 (8)0.0181
C1A1.1319 (3)−0.08669 (19)−0.17069 (12)0.0162
C2A1.2819 (3)−0.0485 (2)−0.10617 (12)0.0183
C3A1.2850 (3)0.0523 (2)−0.04843 (12)0.0208
C4A1.1391 (3)0.1145 (2)−0.05462 (12)0.0185
N5A0.8403 (2)0.14280 (16)−0.12490 (10)0.0151
C6A0.5402 (3)0.16629 (19)−0.20790 (11)0.0137
C7A0.2640 (3)0.09548 (18)−0.33341 (11)0.0137
C8A0.1974 (3)0.01396 (19)−0.40464 (11)0.0154
C9A0.3055 (3)−0.06961 (19)−0.42595 (11)0.0151
C10A0.4729 (3)−0.07980 (19)−0.37831 (11)0.0146
N11A0.6952 (2)0.01079 (16)−0.24828 (9)0.0130
C12A0.8273 (3)−0.06404 (19)−0.24787 (11)0.0140
C13A0.9855 (3)0.07665 (19)−0.11960 (11)0.0142
C14A0.7090 (3)0.10816 (18)−0.18691 (11)0.0134
C15A0.4331 (3)0.09159 (18)−0.28464 (11)0.0129
C16A0.5321 (3)0.00196 (19)−0.30772 (11)0.0141
C17A0.9828 (3)−0.02472 (18)−0.17809 (11)0.0139
Cl1B0.89170 (7)0.34858 (5)0.34019 (3)0.0173
Cl2B0.70190 (7)0.70635 (5)0.52404 (3)0.0192
O1B0.5337 (2)0.26130 (14)0.19080 (9)0.0189
O2B0.1512 (2)0.64871 (14)0.28391 (8)0.0169
C1B−0.1458 (3)0.55847 (19)0.14382 (12)0.0163
C2B−0.2819 (3)0.5080 (2)0.07583 (12)0.0193
C3B−0.2635 (3)0.4038 (2)0.02547 (12)0.0192
C4B−0.1086 (3)0.3521 (2)0.04302 (12)0.0176
N5B0.1872 (3)0.34718 (16)0.12667 (10)0.0153
C6B0.4831 (3)0.34864 (19)0.22288 (11)0.0148
C7B0.7333 (3)0.44170 (19)0.35489 (12)0.0146
C8B0.7737 (3)0.5271 (2)0.42418 (12)0.0165
C9B0.6463 (3)0.60188 (19)0.43630 (11)0.0151
C10B0.4808 (3)0.59806 (19)0.38219 (11)0.0144
N11B0.2930 (2)0.49043 (16)0.24801 (9)0.0130
C12B0.1523 (3)0.55777 (19)0.23644 (11)0.0138
C13B0.0312 (3)0.40238 (18)0.11173 (11)0.0139
C14B0.3049 (3)0.39217 (19)0.19191 (11)0.0140
C15B0.5689 (3)0.43274 (19)0.29911 (11)0.0139
C16B0.4478 (3)0.51304 (19)0.31342 (11)0.0135
C17B0.0111 (3)0.50602 (19)0.16292 (11)0.0141
H1A1.130 (2)−0.1539 (13)−0.2094 (9)0.0204*
H2A1.380 (2)−0.0909 (13)−0.1021 (9)0.0206*
H3A1.388 (2)0.0793 (14)−0.0051 (9)0.0251*
H4A1.142 (2)0.1815 (13)−0.0153 (9)0.0215*
H5A0.083 (2)0.0145 (13)−0.4368 (9)0.0178*
H6A0.541 (2)−0.1385 (13)−0.3938 (9)0.0187*
H1B−0.159 (2)0.6286 (13)0.1773 (9)0.0204*
H2B−0.388 (2)0.5439 (14)0.0634 (9)0.0248*
H3B−0.355 (2)0.3688 (14)−0.0209 (9)0.0224*
H4B−0.094 (2)0.2847 (13)0.0083 (9)0.0208*
H5B0.885 (2)0.5353 (13)0.4615 (9)0.0195*
H6B0.398 (2)0.6491 (12)0.3915 (9)0.0160*
U11U22U33U12U13U23
Cl1A0.0147 (2)0.0165 (2)0.0164 (2)0.00768 (18)0.00158 (17)0.00171 (18)
Cl2A0.0192 (2)0.0251 (3)0.0143 (2)0.0077 (2)−0.00299 (18)−0.00561 (19)
O1A0.0188 (7)0.0163 (7)0.0172 (7)0.0078 (6)0.0020 (6)−0.0021 (6)
O2A0.0182 (7)0.0184 (7)0.0177 (7)0.0084 (6)0.0001 (6)−0.0036 (6)
C1A0.0174 (10)0.0143 (9)0.0181 (10)0.0060 (8)0.0036 (8)0.0031 (8)
C2A0.0166 (10)0.0196 (10)0.0207 (10)0.0089 (8)0.0013 (8)0.0042 (8)
C3A0.0202 (10)0.0255 (11)0.0166 (10)0.0097 (9)−0.0037 (8)0.0014 (8)
C4A0.0196 (10)0.0208 (10)0.0138 (9)0.0067 (8)−0.0007 (8)−0.0015 (8)
N5A0.0154 (8)0.0161 (8)0.0138 (8)0.0061 (7)0.0005 (6)0.0000 (6)
C6A0.0131 (9)0.0135 (9)0.0146 (9)0.0039 (7)0.0020 (7)0.0031 (7)
C7A0.0137 (9)0.0125 (9)0.0154 (9)0.0042 (7)0.0033 (7)0.0026 (7)
C8A0.0122 (9)0.0187 (10)0.0144 (9)0.0048 (8)−0.0011 (7)0.0024 (8)
C9A0.0150 (9)0.0151 (9)0.0121 (9)0.0016 (8)0.0004 (7)−0.0015 (7)
C10A0.0134 (9)0.0133 (9)0.0162 (9)0.0039 (7)0.0012 (7)−0.0005 (7)
N11A0.0126 (8)0.0131 (8)0.0122 (8)0.0038 (6)−0.0005 (6)−0.0011 (6)
C12A0.0120 (9)0.0138 (9)0.0156 (9)0.0025 (7)0.0027 (7)0.0024 (7)
C13A0.0140 (9)0.0137 (9)0.0150 (9)0.0043 (7)0.0021 (7)0.0030 (7)
C14A0.0145 (9)0.0116 (9)0.0147 (9)0.0046 (7)0.0028 (7)0.0010 (7)
C15A0.0124 (9)0.0121 (9)0.0138 (9)0.0028 (7)0.0027 (7)0.0024 (7)
C16A0.0125 (9)0.0145 (9)0.0147 (9)0.0033 (7)0.0013 (7)0.0027 (7)
C17A0.0133 (9)0.0130 (9)0.0148 (9)0.0034 (7)0.0014 (7)0.0028 (7)
Cl1B0.0148 (2)0.0186 (2)0.0217 (2)0.00967 (18)0.00275 (18)0.00399 (19)
Cl2B0.0183 (2)0.0231 (3)0.0153 (2)0.00847 (19)−0.00197 (18)−0.00346 (19)
O1B0.0201 (7)0.0182 (7)0.0213 (7)0.0103 (6)0.0049 (6)0.0004 (6)
O2B0.0170 (7)0.0174 (7)0.0167 (7)0.0085 (6)−0.0007 (5)−0.0024 (6)
C1B0.0173 (9)0.0151 (9)0.0173 (9)0.0070 (8)0.0013 (8)0.0010 (8)
C2B0.0168 (10)0.0214 (10)0.0210 (10)0.0097 (8)−0.0012 (8)0.0028 (8)
C3B0.0179 (10)0.0207 (10)0.0162 (10)0.0052 (8)−0.0038 (8)−0.0006 (8)
C4B0.0207 (10)0.0163 (9)0.0157 (9)0.0068 (8)0.0010 (8)−0.0003 (8)
N5B0.0162 (8)0.0149 (8)0.0153 (8)0.0059 (7)0.0022 (6)0.0011 (7)
C6B0.0120 (9)0.0157 (9)0.0165 (9)0.0035 (7)0.0031 (7)0.0038 (8)
C7B0.0126 (9)0.0141 (9)0.0197 (10)0.0065 (7)0.0045 (7)0.0048 (8)
C8B0.0148 (9)0.0190 (10)0.0156 (9)0.0057 (8)−0.0010 (8)0.0039 (8)
C9B0.0160 (9)0.0143 (9)0.0128 (9)0.0024 (7)0.0013 (7)−0.0001 (7)
C10B0.0123 (9)0.0158 (9)0.0157 (9)0.0055 (7)0.0022 (7)0.0009 (8)
N11B0.0117 (7)0.0142 (8)0.0128 (8)0.0048 (6)0.0002 (6)−0.0001 (6)
C12B0.0120 (9)0.0141 (9)0.0155 (9)0.0039 (7)0.0022 (7)0.0027 (7)
C13B0.0145 (9)0.0117 (9)0.0158 (9)0.0035 (7)0.0030 (7)0.0034 (7)
C14B0.0141 (9)0.0126 (9)0.0166 (9)0.0053 (7)0.0049 (7)0.0022 (7)
C15B0.0124 (9)0.0137 (9)0.0162 (9)0.0045 (7)0.0034 (7)0.0030 (7)
C16B0.0106 (8)0.0144 (9)0.0152 (9)0.0034 (7)0.0009 (7)0.0029 (7)
C17B0.0145 (9)0.0137 (9)0.0144 (9)0.0045 (7)0.0024 (7)0.0034 (7)
Cl1A—C7A1.7272 (19)C1A—C2A1.379 (3)
Cl2A—C9A1.7358 (19)C1A—H1A0.937 (15)
Cl1B—C7B1.7276 (19)C2A—C3A1.399 (3)
Cl2B—C9B1.734 (2)C2A—H2A0.929 (16)
O1A—C6A1.213 (2)C3A—C4A1.379 (3)
O2A—C12A1.221 (2)C3A—H3A0.937 (16)
O1B—C6B1.211 (2)C4A—C13A1.399 (3)
O2B—C12B1.221 (2)C4A—H4A0.937 (15)
N5A—C13A1.405 (2)C14A—C6A1.518 (3)
N5A—C14A1.275 (2)C15B—C7B1.387 (3)
N11A—C16A1.419 (2)C15B—C16B1.405 (3)
N11A—C12A1.396 (2)C15B—C6B1.480 (3)
N11A—C14A1.395 (2)C7B—C8B1.387 (3)
N5B—C13B1.401 (2)C8B—C9B1.389 (3)
N5B—C14B1.277 (3)C8B—H5B0.931 (15)
N11B—C16B1.421 (2)C9B—C10B1.390 (3)
N11B—C12B1.394 (2)C10B—C16B1.384 (3)
N11B—C14B1.396 (2)C10B—H6B0.930 (15)
C15A—C7A1.386 (3)C12B—C17B1.467 (3)
C15A—C16A1.401 (3)C17B—C1B1.399 (3)
C15A—C6A1.477 (3)C17B—C13B1.410 (3)
C7A—C8A1.389 (3)C1B—C2B1.378 (3)
C8A—C9A1.389 (3)C1B—H1B0.942 (15)
C8A—H5A0.925 (15)C2B—C3B1.402 (3)
C9A—C10A1.390 (3)C2B—H2B0.947 (16)
C10A—C16A1.380 (3)C3B—C4B1.377 (3)
C10A—H6A0.938 (15)C3B—H3B0.937 (16)
C12A—C17A1.465 (3)C4B—C13B1.399 (3)
C17A—C1A1.397 (3)C4B—H4B0.936 (16)
C17A—C13A1.412 (3)C14B—C6B1.517 (3)
Cl1A—C7A—C15A121.65 (15)Cl1B—C7B—C15B121.43 (15)
Cl1A—C7A—C8A118.05 (15)Cl1B—C7B—C8B118.59 (15)
C15A—C7A—C8A120.30 (18)C15B—C7B—C8B119.98 (18)
C7A—C15A—C6A132.59 (18)C7B—C15B—C6B132.47 (18)
C7A—C15A—C16A118.79 (17)C7B—C15B—C16B118.96 (18)
C6A—C15A—C16A108.62 (16)C6B—C15B—C16B108.54 (16)
C15A—C6A—O1A129.87 (18)C15B—C6B—O1B130.04 (18)
C15A—C6A—C14A104.37 (15)C15B—C6B—C14B104.47 (16)
O1A—C6A—C14A125.75 (17)O1B—C6B—C14B125.46 (18)
C6A—C14A—N5A126.26 (17)C6B—C14B—N11B107.35 (16)
C6A—C14A—N11A107.38 (16)C6B—C14B—N5B126.40 (17)
N5A—C14A—N11A126.35 (17)N11B—C14B—N5B126.25 (17)
C14A—N5A—C13A115.81 (17)C14B—N11B—C16B110.20 (15)
N5A—C13A—C4A118.48 (17)C14B—N11B—C12B122.59 (16)
N5A—C13A—C17A122.13 (17)C16B—N11B—C12B127.14 (16)
C4A—C13A—C17A119.38 (18)N11B—C16B—C15B109.35 (16)
C13A—C4A—C3A119.69 (19)N11B—C16B—C10B127.71 (17)
C13A—C4A—H4A120.2 (10)C15B—C16B—C10B122.94 (18)
C3A—C4A—H4A120.2 (10)C16B—C10B—C9B115.54 (18)
C4A—C3A—C2A120.96 (19)C16B—C10B—H6B122.2 (10)
C4A—C3A—H3A119.0 (10)C9B—C10B—H6B122.3 (10)
C2A—C3A—H3A120.0 (10)C10B—C9B—C8B123.79 (18)
C3A—C2A—C1A120.04 (19)C10B—C9B—Cl2B119.12 (15)
C3A—C2A—H2A121.2 (10)C8B—C9B—Cl2B117.08 (15)
C1A—C2A—H2A118.8 (10)C9B—C8B—C7B118.75 (18)
C2A—C1A—C17A119.86 (19)C9B—C8B—H5B120.6 (10)
C2A—C1A—H1A119.9 (10)C7B—C8B—H5B120.6 (10)
C17A—C1A—H1A120.2 (10)N11B—C12B—O2B121.91 (17)
C13A—C17A—C1A120.07 (18)N11B—C12B—C17B112.41 (16)
C13A—C17A—C12A120.66 (17)O2B—C12B—C17B125.68 (17)
C1A—C17A—C12A119.26 (17)C12B—C17B—C13B120.36 (17)
C17A—C12A—N11A112.36 (16)C12B—C17B—C1B119.93 (17)
C17A—C12A—O2A125.53 (18)C13B—C17B—C1B119.70 (18)
N11A—C12A—O2A122.11 (17)C17B—C13B—N5B122.53 (17)
C12A—N11A—C14A122.65 (16)C17B—C13B—C4B119.38 (18)
C12A—N11A—C16A127.27 (16)N5B—C13B—C4B118.09 (17)
C14A—N11A—C16A110.08 (15)C13B—N5B—C14B115.64 (16)
N11A—C16A—C15A109.50 (16)C13B—C4B—C3B120.22 (19)
N11A—C16A—C10A127.57 (18)C13B—C4B—H4B119.5 (10)
C15A—C16A—C10A122.93 (18)C3B—C4B—H4B120.2 (10)
C16A—C10A—C9A115.95 (18)C4B—C3B—C2B120.39 (19)
C16A—C10A—H6A122.5 (10)C4B—C3B—H3B118.8 (10)
C9A—C10A—H6A121.5 (10)C2B—C3B—H3B120.8 (10)
C10A—C9A—C8A123.45 (18)C3B—C2B—C1B120.12 (19)
C10A—C9A—Cl2A118.47 (15)C3B—C2B—H2B120.2 (10)
C8A—C9A—Cl2A118.07 (15)C1B—C2B—H2B119.6 (10)
C9A—C8A—C7A118.51 (17)C17B—C1B—C2B120.18 (18)
C9A—C8A—H5A120.8 (10)C17B—C1B—H1B120.2 (10)
C7A—C8A—H5A120.6 (10)C2B—C1B—H1B119.6 (10)
D—H···AD—HH···AD···AD—H···A
C1B—H1B···Cl1Ai0.94 (2)2.73 (2)3.637 (2)162 (1)
C2A—H2A···O1Bii0.93 (2)2.54 (2)3.264 (3)135 (1)
C4B—H4B···N5Aiii0.94 (2)2.56 (2)3.422 (3)154 (1)
C10A—H6A···Cl2Biv0.94 (2)2.67 (2)3.585 (2)165 (1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1B—H1B⋯Cl1Ai0.94 (2)2.73 (2)3.637 (2)162 (1)
C2A—H2A⋯O1Bii0.93 (2)2.54 (2)3.264 (3)135 (1)
C4B—H4B⋯N5Aiii0.94 (2)2.56 (2)3.422 (3)154 (1)
C10A—H6A⋯Cl2Biv0.94 (2)2.67 (2)3.585 (2)165 (1)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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