Literature DB >> 22065101

Aqua-(dicyanamido-κN)(2,9-dimethyl-1,10-phenanthroline-κN,N')(nitrato-κO,O')cobalt(II)-2,9-dimethyl-1,10-phenanthroline-water (2/1/2).

Feng-Hua Cui, Pei-Zheng Zhao.   

Abstract

In the title compound, 2[Co(C(2)N(3))(NO(3))(C(14)H(12)N(2))(H(2)O)]·C(14)H(12)N(2)·2H(2)O, the Co(II) ion is coordinated by a bidentate 2,9-dimethyl-1,10-phenanthroline (dmphen) ligand, a bidentate nitrate anion, a water mol-ecule and a monodentate dicyan-amide group in a distorted octa-hedral geometry. One uncoordinated dmphen mol-ecule is situated on a crystallographic twofold axis and the asymmetric unit is completed by one water mol-ecule. In the crystal, mol-ecules form a one-dimensional framework in the [001] direction through O-H⋯N and O-H⋯O hydrogen bonds. The crystal packing is further stabilized by π-π stacking inter-actions between the dmphen rings of neighboring mol-ecules, with a centroid-centroid separation of 3.5641 (8) Å and a partially overlapped arrangement of parallel dmphen rings with a distance of 3.407 (2) Å.

Entities:  

Year:  2011        PMID: 22065101      PMCID: PMC3201307          DOI: 10.1107/S1600536811035148

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to metal–phenanthroline complexes, see: Naing et al. (1995 ▶); Wang et al. (1996 ▶); Wall et al. (1999 ▶). For related Co(II)–phenanthroline structures, see: Ding et al. (2006 ▶); Xuan & Zhao (2007 ▶); Zhao et al. (2008 ▶).

Experimental

Crystal data

2[Co(C2N3)(NO3)(C14H12N2)(H2O)]·C14H12N2·2H2O M = 1070.82 Monoclinic, a = 17.993 (6) Å b = 11.770 (4) Å c = 23.428 (7) Å β = 106.981 (4)° V = 4745 (3) Å3 Z = 4 Mo Kα radiation μ = 0.77 mm−1 T = 291 K 0.34 × 0.18 × 0.11 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.781, T max = 0.917 17592 measured reflections 4400 independent reflections 2862 reflections with I > 2σ(I) R int = 0.070

Refinement

R[F 2 > 2σ(F 2)] = 0.066 wR(F 2) = 0.196 S = 1.04 4400 reflections 328 parameters 36 restraints H-atom parameters constrained Δρmax = 1.06 e Å−3 Δρmin = −0.58 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811035148/bh2369sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811035148/bh2369Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2[Co(C2N3)(NO3)(C14H12N2)(H2O)]·C14H12N2·2H2OF(000) = 2208
Mr = 1070.82Dx = 1.499 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2628 reflections
a = 17.993 (6) Åθ = 2.4–21.2°
b = 11.770 (4) ŵ = 0.77 mm1
c = 23.428 (7) ÅT = 291 K
β = 106.981 (4)°Block, pink
V = 4745 (3) Å30.34 × 0.18 × 0.11 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer4400 independent reflections
Radiation source: fine-focus sealed tube2862 reflections with I > 2σ(I)
graphiteRint = 0.070
φ and ω scansθmax = 25.5°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −21→21
Tmin = 0.781, Tmax = 0.917k = −13→14
17592 measured reflectionsl = −28→28
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.066Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.196H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.1026P)2 + 4.8562P] where P = (Fo2 + 2Fc2)/3
4400 reflections(Δ/σ)max < 0.001
328 parametersΔρmax = 1.06 e Å3
36 restraintsΔρmin = −0.58 e Å3
0 constraints
xyzUiso*/Ueq
Co10.42687 (4)0.19148 (5)0.38145 (3)0.0453 (3)
O10.3472 (2)0.0602 (3)0.32847 (17)0.0706 (10)
O20.3720 (3)−0.1178 (3)0.3477 (2)0.1070 (17)
O30.4528 (2)0.0107 (3)0.39358 (17)0.0648 (10)
O40.4792 (3)0.1851 (3)0.31525 (17)0.0672 (11)
H1W0.44500.17470.28190.101*
H2W0.51240.23440.31240.101*
O50.5612 (6)−0.0066 (7)0.2802 (4)0.233 (5)
H3W0.57310.05720.29750.350*
H4W0.5602−0.03590.31320.350*
N10.5202 (2)0.2867 (3)0.43700 (16)0.0443 (9)
N20.3892 (2)0.3599 (3)0.35623 (16)0.0434 (9)
N30.3653 (3)0.1776 (4)0.4424 (2)0.0694 (13)
N40.2925 (4)0.1214 (6)0.5087 (3)0.114 (2)
N50.3362 (7)0.1052 (7)0.6164 (4)0.172 (4)
N60.3906 (3)−0.0181 (4)0.3558 (2)0.0667 (12)
N70.5696 (2)0.3653 (4)0.29332 (18)0.0534 (10)
C10.5844 (3)0.2489 (5)0.4772 (2)0.0568 (13)
C20.6423 (3)0.3248 (7)0.5087 (3)0.0753 (18)
H20.68660.29660.53630.090*
C30.6345 (3)0.4380 (6)0.4995 (3)0.0701 (16)
H30.67370.48710.52000.084*
C40.5662 (3)0.4812 (5)0.4582 (2)0.0582 (14)
C50.5522 (4)0.5994 (5)0.4464 (3)0.0696 (16)
H50.58870.65220.46690.084*
C60.4872 (4)0.6351 (5)0.4062 (3)0.0694 (16)
H60.47930.71250.39910.083*
C70.4299 (3)0.5567 (4)0.3738 (2)0.0534 (13)
C80.3608 (4)0.5883 (4)0.3314 (3)0.0639 (15)
H80.35040.66470.32260.077*
C90.3089 (3)0.5090 (5)0.3029 (3)0.0651 (15)
H90.26330.53080.27450.078*
C100.3242 (3)0.3931 (4)0.3164 (2)0.0504 (12)
C110.4419 (3)0.4398 (4)0.38500 (19)0.0433 (11)
C120.5111 (3)0.4015 (4)0.4278 (2)0.0455 (11)
C130.5937 (4)0.1235 (5)0.4881 (3)0.0800 (18)
H13A0.55820.09830.50910.120*
H13B0.64600.10730.51150.120*
H13C0.58270.08440.45050.120*
C140.2674 (3)0.3042 (5)0.2860 (3)0.0705 (16)
H14A0.29200.25210.26580.106*
H14B0.22400.33940.25760.106*
H14C0.24950.26380.31510.106*
C150.3341 (4)0.1530 (5)0.4758 (3)0.0691 (16)
C160.3184 (6)0.1179 (7)0.5646 (5)0.110 (3)
C170.6397 (4)0.3631 (7)0.3335 (3)0.0808 (18)
C180.6784 (4)0.4641 (8)0.3554 (3)0.099 (2)
H180.72740.46120.38300.118*
C190.6457 (5)0.5651 (8)0.3371 (3)0.101 (2)
H190.67120.63150.35340.121*
C200.5729 (5)0.5711 (6)0.2933 (3)0.0904 (19)
C210.5337 (5)0.6744 (6)0.2707 (4)0.105 (3)
H210.55650.74330.28560.127*
C220.5374 (3)0.4659 (4)0.2729 (2)0.0542 (13)
C230.6749 (4)0.2515 (8)0.3539 (3)0.111 (3)
H23A0.65220.19490.32450.167*
H23B0.66550.23200.39100.167*
H23C0.72990.25500.35950.167*
U11U22U33U12U13U23
Co10.0533 (5)0.0302 (4)0.0530 (4)−0.0039 (3)0.0165 (3)−0.0007 (3)
O10.075 (3)0.048 (2)0.079 (3)−0.002 (2)0.007 (2)0.0021 (19)
O20.133 (4)0.035 (2)0.144 (4)−0.020 (2)0.026 (3)−0.015 (2)
O30.070 (3)0.043 (2)0.078 (2)−0.0033 (18)0.017 (2)0.0042 (17)
O40.104 (3)0.041 (2)0.071 (2)−0.0056 (19)0.048 (2)−0.0030 (16)
O50.371 (15)0.145 (7)0.204 (9)−0.066 (8)0.118 (9)−0.001 (6)
N10.047 (2)0.040 (2)0.047 (2)−0.0035 (17)0.0147 (18)0.0012 (16)
N20.047 (2)0.035 (2)0.051 (2)−0.0026 (18)0.0189 (19)−0.0007 (17)
N30.078 (3)0.060 (3)0.082 (3)−0.016 (2)0.041 (3)−0.010 (2)
N40.129 (5)0.110 (5)0.136 (5)−0.022 (4)0.092 (5)−0.001 (4)
N50.295 (11)0.124 (7)0.147 (7)−0.022 (7)0.141 (8)−0.015 (5)
N60.084 (4)0.032 (3)0.082 (3)−0.010 (2)0.022 (3)−0.004 (2)
N70.043 (2)0.062 (3)0.058 (2)−0.001 (2)0.020 (2)−0.004 (2)
C10.054 (3)0.064 (3)0.051 (3)−0.004 (3)0.014 (2)0.001 (3)
C20.049 (3)0.112 (6)0.059 (3)−0.008 (3)0.007 (3)−0.003 (3)
C30.055 (3)0.078 (4)0.075 (4)−0.022 (3)0.017 (3)−0.017 (3)
C40.060 (3)0.057 (3)0.064 (3)−0.023 (3)0.028 (3)−0.017 (3)
C50.082 (4)0.050 (3)0.083 (4)−0.032 (3)0.034 (4)−0.026 (3)
C60.097 (5)0.037 (3)0.087 (4)−0.015 (3)0.048 (4)−0.013 (3)
C70.071 (4)0.030 (2)0.069 (3)−0.001 (2)0.036 (3)−0.006 (2)
C80.085 (4)0.034 (3)0.081 (4)0.015 (3)0.037 (3)0.009 (3)
C90.066 (4)0.054 (3)0.076 (4)0.016 (3)0.021 (3)0.008 (3)
C100.057 (3)0.042 (3)0.053 (3)0.006 (2)0.017 (2)0.002 (2)
C110.052 (3)0.034 (2)0.050 (3)−0.005 (2)0.023 (2)−0.0062 (19)
C120.050 (3)0.041 (3)0.052 (3)−0.009 (2)0.025 (2)−0.007 (2)
C130.078 (4)0.073 (4)0.078 (4)0.012 (3)0.007 (3)0.021 (3)
C140.061 (4)0.066 (4)0.074 (4)−0.002 (3)0.003 (3)−0.001 (3)
C150.079 (4)0.045 (3)0.098 (4)−0.009 (3)0.049 (4)−0.010 (3)
C160.160 (6)0.081 (5)0.128 (6)−0.018 (4)0.105 (6)−0.018 (5)
C170.054 (4)0.130 (6)0.065 (3)−0.010 (4)0.028 (3)−0.011 (4)
C180.066 (4)0.145 (6)0.088 (4)−0.038 (4)0.028 (3)−0.032 (4)
C190.096 (5)0.118 (5)0.106 (5)−0.066 (4)0.057 (4)−0.047 (4)
C200.114 (5)0.072 (4)0.112 (5)−0.040 (4)0.075 (4)−0.027 (3)
C210.152 (7)0.053 (3)0.139 (7)−0.025 (4)0.085 (5)−0.023 (4)
C220.061 (3)0.046 (3)0.071 (3)−0.014 (2)0.043 (3)−0.012 (2)
C230.073 (5)0.174 (8)0.084 (5)0.046 (5)0.019 (4)0.030 (5)
Co1—O42.037 (4)C5—H50.9300
Co1—N32.053 (5)C6—C71.425 (8)
Co1—N12.120 (4)C6—H60.9300
Co1—N22.122 (4)C7—C81.397 (7)
Co1—O32.180 (4)C7—C111.405 (7)
Co1—O12.224 (4)C8—C91.350 (8)
O1—N61.256 (6)C8—H80.9300
O2—N61.220 (5)C9—C101.408 (7)
O3—N61.253 (6)C9—H90.9300
O4—H1W0.8501C10—C141.491 (7)
O4—H2W0.8500C11—C121.425 (7)
O5—H3W0.8500C13—H13A0.9600
O5—H4W0.8501C13—H13B0.9600
N1—C11.336 (6)C13—H13C0.9600
N1—C121.371 (6)C14—H14A0.9600
N2—C101.325 (6)C14—H14B0.9600
N2—C111.366 (6)C14—H14C0.9600
N3—C151.126 (7)C17—C181.398 (10)
N4—C161.256 (11)C17—C231.476 (11)
N4—C151.276 (8)C18—C191.339 (11)
N5—C161.172 (11)C18—H180.9300
N7—C171.336 (7)C19—C201.410 (11)
N7—C221.344 (7)C19—H190.9300
C1—C21.406 (8)C20—C221.411 (8)
C1—C131.499 (8)C20—C211.427 (10)
C2—C31.349 (9)C21—C21i1.314 (17)
C2—H20.9300C21—H210.9300
C3—C41.419 (8)C22—C22i1.455 (11)
C3—H30.9300C23—H23A0.9600
C4—C121.398 (7)C23—H23B0.9600
C4—C51.426 (8)C23—H23C0.9600
C5—C61.337 (9)
O4—Co1—N3171.71 (16)C9—C8—C7120.8 (5)
O4—Co1—N191.57 (16)C9—C8—H8119.6
N3—Co1—N196.13 (17)C7—C8—H8119.6
O4—Co1—N290.19 (14)C8—C9—C10119.8 (5)
N3—Co1—N294.27 (17)C8—C9—H9120.1
N1—Co1—N278.95 (14)C10—C9—H9120.1
O4—Co1—O386.23 (14)N2—C10—C9121.2 (5)
N3—Co1—O388.30 (17)N2—C10—C14118.1 (4)
N1—Co1—O3109.58 (15)C9—C10—C14120.7 (5)
N2—Co1—O3170.81 (15)N2—C11—C7122.4 (4)
O4—Co1—O185.13 (16)N2—C11—C12117.9 (4)
N3—Co1—O186.69 (17)C7—C11—C12119.7 (4)
N1—Co1—O1167.45 (15)N1—C12—C4123.1 (5)
N2—Co1—O1113.10 (14)N1—C12—C11117.5 (4)
O3—Co1—O158.18 (14)C4—C12—C11119.3 (5)
N6—O1—Co191.2 (3)C1—C13—H13A109.5
N6—O3—Co193.4 (3)C1—C13—H13B109.5
Co1—O4—H1W109.6H13A—C13—H13B109.5
Co1—O4—H2W121.9C1—C13—H13C109.5
H1W—O4—H2W111.2H13A—C13—H13C109.5
H3W—O5—H4W89.8H13B—C13—H13C109.5
C1—N1—C12118.6 (4)C10—C14—H14A109.5
C1—N1—Co1128.6 (3)C10—C14—H14B109.5
C12—N1—Co1112.8 (3)H14A—C14—H14B109.5
C10—N2—C11119.2 (4)C10—C14—H14C109.5
C10—N2—Co1128.1 (3)H14A—C14—H14C109.5
C11—N2—Co1112.8 (3)H14B—C14—H14C109.5
C15—N3—Co1169.5 (5)N3—C15—N4173.6 (8)
C16—N4—C15122.4 (8)N5—C16—N4172.3 (10)
O2—N6—O3121.2 (5)N7—C17—C18120.5 (7)
O2—N6—O1121.6 (5)N7—C17—C23118.3 (7)
O3—N6—O1117.1 (4)C18—C17—C23121.2 (7)
C17—N7—C22119.3 (5)C19—C18—C17120.9 (7)
N1—C1—C2120.9 (5)C19—C18—H18119.6
N1—C1—C13118.5 (5)C17—C18—H18119.6
C2—C1—C13120.6 (5)C18—C19—C20120.3 (7)
C3—C2—C1121.1 (6)C18—C19—H19119.8
C3—C2—H2119.4C20—C19—H19119.8
C1—C2—H2119.4C19—C20—C22115.8 (7)
C2—C3—C4119.4 (5)C19—C20—C21124.5 (7)
C2—C3—H3120.3C22—C20—C21119.7 (7)
C4—C3—H3120.3C21i—C21—C20121.6 (4)
C12—C4—C3116.8 (5)C21i—C21—H21119.2
C12—C4—C5119.8 (5)C20—C21—H21119.2
C3—C4—C5123.4 (5)N7—C22—C20123.2 (6)
C6—C5—C4120.8 (5)N7—C22—C22i118.2 (3)
C6—C5—H5119.6C20—C22—C22i118.7 (4)
C4—C5—H5119.6C17—C23—H23A109.5
C5—C6—C7121.3 (5)C17—C23—H23B109.5
C5—C6—H6119.4H23A—C23—H23B109.5
C7—C6—H6119.4C17—C23—H23C109.5
C8—C7—C11116.7 (5)H23A—C23—H23C109.5
C8—C7—C6124.2 (5)H23B—C23—H23C109.5
C11—C7—C6119.1 (5)
O4—Co1—O1—N690.4 (3)C5—C6—C7—C8179.8 (5)
N3—Co1—O1—N6−88.2 (3)C5—C6—C7—C110.5 (8)
N1—Co1—O1—N615.2 (8)C11—C7—C8—C9−0.1 (8)
N2—Co1—O1—N6178.5 (3)C6—C7—C8—C9−179.5 (5)
O3—Co1—O1—N61.8 (3)C7—C8—C9—C100.5 (8)
O4—Co1—O3—N6−88.4 (3)C11—N2—C10—C90.6 (7)
N3—Co1—O3—N685.3 (3)Co1—N2—C10—C9−177.4 (4)
N1—Co1—O3—N6−178.8 (3)C11—N2—C10—C14−179.6 (4)
O1—Co1—O3—N6−1.8 (3)Co1—N2—C10—C142.4 (7)
O4—Co1—N1—C1−90.8 (4)C8—C9—C10—N2−0.8 (8)
N3—Co1—N1—C186.1 (4)C8—C9—C10—C14179.3 (5)
N2—Co1—N1—C1179.3 (4)C10—N2—C11—C7−0.1 (6)
O3—Co1—N1—C1−4.3 (4)Co1—N2—C11—C7178.2 (3)
O1—Co1—N1—C1−16.3 (9)C10—N2—C11—C12179.8 (4)
O4—Co1—N1—C1287.9 (3)Co1—N2—C11—C12−1.9 (5)
N3—Co1—N1—C12−95.2 (3)C8—C7—C11—N2−0.1 (7)
N2—Co1—N1—C12−2.0 (3)C6—C7—C11—N2179.3 (4)
O3—Co1—N1—C12174.4 (3)C8—C7—C11—C12180.0 (4)
O1—Co1—N1—C12162.4 (6)C6—C7—C11—C12−0.6 (7)
O4—Co1—N2—C1088.7 (4)C1—N1—C12—C40.4 (7)
N3—Co1—N2—C10−84.3 (4)Co1—N1—C12—C4−178.4 (4)
N1—Co1—N2—C10−179.8 (4)C1—N1—C12—C11−179.5 (4)
O1—Co1—N2—C103.9 (4)Co1—N1—C12—C111.7 (5)
O4—Co1—N2—C11−89.4 (3)C3—C4—C12—N11.1 (7)
N3—Co1—N2—C1197.5 (3)C5—C4—C12—N1−179.5 (4)
N1—Co1—N2—C112.1 (3)C3—C4—C12—C11−179.0 (4)
O1—Co1—N2—C11−174.2 (3)C5—C4—C12—C110.4 (7)
N1—Co1—N3—C15−113 (3)N2—C11—C12—N10.2 (6)
N2—Co1—N3—C15167 (3)C7—C11—C12—N1−179.9 (4)
O3—Co1—N3—C15−4(3)N2—C11—C12—C4−179.7 (4)
O1—Co1—N3—C1555 (3)C7—C11—C12—C40.2 (6)
Co1—O3—N6—O2−174.5 (5)C22—N7—C17—C181.8 (8)
Co1—O3—N6—O13.1 (5)C22—N7—C17—C23−178.1 (5)
Co1—O1—N6—O2174.5 (5)N7—C17—C18—C190.8 (10)
Co1—O1—N6—O3−3.0 (5)C23—C17—C18—C19−179.3 (6)
C12—N1—C1—C2−1.2 (7)C17—C18—C19—C20−2.9 (11)
Co1—N1—C1—C2177.4 (4)C18—C19—C20—C222.4 (10)
C12—N1—C1—C13178.9 (4)C18—C19—C20—C21−179.6 (7)
Co1—N1—C1—C13−2.5 (7)C19—C20—C21—C21i179.3 (9)
N1—C1—C2—C30.4 (9)C22—C20—C21—C21i−2.8 (14)
C13—C1—C2—C3−179.8 (6)C17—N7—C22—C20−2.2 (7)
C1—C2—C3—C41.2 (9)C17—N7—C22—C22i177.2 (5)
C2—C3—C4—C12−1.9 (8)C19—C20—C22—N70.1 (8)
C2—C3—C4—C5178.8 (5)C21—C20—C22—N7−177.9 (6)
C12—C4—C5—C6−0.5 (8)C19—C20—C22—C22i−179.3 (6)
C3—C4—C5—C6178.8 (5)C21—C20—C22—C22i2.6 (9)
C4—C5—C6—C70.1 (9)
D—H···AD—HH···AD···AD—H···A
O4—H1W···O5i0.852.573.111 (9)123.
O4—H2W···N70.851.972.810 (6)167.
O5—H3W···O40.852.392.941 (11)123.
O5—H4W···N5ii0.852.252.830 (15)126.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H1W⋯O5i0.852.573.111 (9)123
O4—H2W⋯N70.851.972.810 (6)167
O5—H4W⋯N5ii0.852.252.830 (15)126

Symmetry codes: (i) ; (ii) .

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