Literature DB >> 21201295

Bis(benzoato-κO,O')(2,9-dimethyl-1,10-phenanthroline-κN,N')cobalt(II).

Pei-Zheng Zhao1, Xiao-Peng Xuan, Qing-Hu Tang.   

Abstract

In the title compound, [Co(C(7)H(5)O(2))(2)(C(14)H(12)N(2))], the Co(II) ion is located on a twofold rotation axis and is chelated by a 2,9-dimethyl-1,10-phenanthroline (dmphen) ligand and two benzoate anions in a distorted octa-hedral geometry. The crystal packing is stabilized by π-π inter-actions between parallel dmphen ligands of neighbouring mol-ecules, with a face-to-face distance of 3.411 (2) Å.

Entities:  

Year:  2008        PMID: 21201295      PMCID: PMC2960282          DOI: 10.1107/S1600536807068080

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information on cobalt coordination chemistry, see: Wang et al. (1996 ▶); Wall et al. (1999 ▶); Naing et al. (1995 ▶). For related structures, see: Wu et al. (2003 ▶); Su et al. (2005 ▶); Ding et al. (2006 ▶); Ren et al. (2007 ▶); Zhong et al. (2006 ▶); Li et al. (2007 ▶).

Experimental

Crystal data

[Co(C7H5O2)2(C14H12N2)] M = 509.41 Monoclinic, a = 17.632 (3) Å b = 14.410 (2) Å c = 9.5282 (15) Å β = 90.796 (2)° V = 2420.6 (7) Å3 Z = 4 Mo Kα radiation μ = 0.75 mm−1 T = 293 (2) K 0.30 × 0.22 × 0.22 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.805, T max = 0.856 8882 measured reflections 2253 independent reflections 1840 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.111 S = 1.06 2253 reflections 180 parameters H-atom parameters constrained Δρmax = 0.48 e Å−3 Δρmin = −0.37 e Å−3 Data collection: SMART (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Bruker, 2001 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536807068080/xu2376sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807068080/xu2376Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C7H5O2)2(C14H12N2)]F000 = 1052
Mr = 509.41Dx = 1.398 Mg m3
Monoclinic, C2/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2433 reflections
a = 17.632 (3) Åθ = 2.3–22.5º
b = 14.410 (2) ŵ = 0.75 mm1
c = 9.5282 (15) ÅT = 293 (2) K
β = 90.796 (2)ºBlock, brown
V = 2420.6 (7) Å30.30 × 0.22 × 0.22 mm
Z = 4
Bruker SMART CCD area-detector diffractometer2253 independent reflections
Radiation source: fine-focus sealed tube1840 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.026
T = 293(2) Kθmax = 25.5º
φ and ω scansθmin = 2.3º
Absorption correction: multi-scan(SADABS; Sheldrick, 2004)h = −21→21
Tmin = 0.805, Tmax = 0.856k = −17→17
8882 measured reflectionsl = −11→11
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H-atom parameters constrained
wR(F2) = 0.111  w = 1/[σ2(Fo2) + (0.0507P)2 + 2.0726P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
2253 reflectionsΔρmax = 0.49 e Å3
180 parametersΔρmin = −0.37 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Co10.50000.76395 (3)0.75000.0542 (2)
C10.63842 (19)0.7820 (2)0.9976 (4)0.0839 (10)
H1A0.59750.74721.03730.126*
H1B0.67760.79061.06730.126*
H1C0.65850.74880.91910.126*
C20.60968 (14)0.8746 (2)0.9496 (3)0.0593 (7)
C30.63991 (16)0.9577 (2)1.0038 (3)0.0678 (8)
H30.67820.95521.07190.081*
C40.61443 (17)1.0410 (2)0.9589 (3)0.0651 (8)
H40.63451.09530.99660.078*
C50.55731 (15)1.04513 (18)0.8547 (3)0.0560 (6)
C60.52910 (13)0.96006 (17)0.8040 (2)0.0471 (6)
C70.52756 (18)1.1299 (2)0.8001 (3)0.0693 (8)
H70.54631.18610.83380.083*
C80.57021 (17)0.68233 (18)0.5604 (3)0.0602 (7)
C90.6070 (2)0.6373 (2)0.4415 (3)0.054 (4)0.452 (14)
C100.68276 (16)0.6552 (3)0.4177 (4)0.066 (3)0.452 (14)
H100.70950.69540.47660.079*0.452 (14)
C110.71880 (15)0.6135 (3)0.3065 (4)0.078 (6)0.452 (14)
H110.76980.62550.29050.094*0.452 (14)
C120.6791 (3)0.5537 (4)0.2190 (5)0.096 (4)0.452 (14)
H120.70340.52560.14410.115*0.452 (14)
C130.6034 (3)0.5358 (6)0.2427 (7)0.111 (4)0.452 (14)
H130.57670.49560.18380.133*0.452 (14)
C140.5674 (3)0.5776 (6)0.3540 (6)0.084 (3)0.452 (14)
H140.51640.56550.37000.100*0.452 (14)
C9'0.6177 (2)0.63122 (19)0.4495 (3)0.056 (3)0.548 (14)
C10'0.68099 (17)0.6701 (2)0.3936 (5)0.064 (3)0.548 (14)
H10'0.69700.72840.42360.077*0.548 (14)
C11'0.72124 (15)0.6236 (2)0.2934 (4)0.083 (5)0.548 (14)
H11'0.76430.65050.25530.100*0.548 (14)
C12'0.6981 (3)0.5377 (2)0.2495 (5)0.084 (3)0.548 (14)
H12'0.72570.50590.18230.101*0.548 (14)
C13'0.6347 (5)0.4987 (3)0.3043 (9)0.090 (3)0.548 (14)
H13'0.61850.44070.27340.108*0.548 (14)
C14'0.5949 (4)0.5449 (3)0.4048 (7)0.072 (2)0.548 (14)
H14'0.55210.51770.44310.087*0.548 (14)
N10.55395 (11)0.87653 (14)0.8526 (2)0.0496 (5)
O10.60107 (14)0.74637 (15)0.6274 (3)0.0847 (5)
O20.50361 (13)0.65984 (16)0.5879 (2)0.0847 (5)
U11U22U33U12U13U23
Co10.0625 (3)0.0494 (3)0.0509 (3)0.0000.0041 (2)0.000
C10.076 (2)0.098 (3)0.077 (2)0.0292 (18)−0.0178 (17)0.0002 (18)
C20.0486 (14)0.0791 (19)0.0502 (15)0.0093 (13)0.0026 (11)−0.0044 (13)
C30.0521 (16)0.098 (2)0.0530 (16)−0.0035 (15)−0.0033 (12)−0.0160 (15)
C40.0679 (18)0.075 (2)0.0522 (16)−0.0159 (15)0.0081 (13)−0.0161 (14)
C50.0638 (16)0.0613 (16)0.0433 (13)−0.0074 (12)0.0138 (12)−0.0070 (11)
C60.0506 (14)0.0547 (14)0.0363 (12)0.0007 (11)0.0101 (10)−0.0017 (10)
C70.099 (2)0.0540 (16)0.0549 (17)−0.0078 (14)0.0167 (14)−0.0058 (12)
C80.0749 (18)0.0479 (15)0.0579 (16)−0.0033 (13)0.0010 (14)0.0031 (12)
C90.059 (5)0.049 (7)0.055 (7)0.002 (5)0.015 (5)0.007 (5)
C100.066 (8)0.075 (6)0.056 (5)−0.008 (5)−0.008 (5)−0.001 (4)
C110.051 (9)0.105 (12)0.079 (10)0.001 (8)0.001 (7)0.006 (10)
C120.096 (7)0.120 (9)0.072 (6)0.012 (6)0.010 (5)−0.035 (5)
C130.103 (7)0.129 (9)0.103 (7)−0.024 (7)0.017 (6)−0.059 (7)
C140.074 (5)0.089 (6)0.088 (6)−0.014 (5)0.013 (5)−0.034 (5)
C9'0.062 (5)0.058 (6)0.047 (6)−0.003 (4)−0.004 (4)−0.006 (4)
C10'0.062 (6)0.059 (4)0.073 (4)0.000 (4)0.004 (4)0.009 (4)
C11'0.071 (9)0.099 (9)0.080 (9)0.007 (7)0.028 (7)0.012 (8)
C12'0.076 (4)0.110 (6)0.067 (4)0.015 (5)0.016 (4)−0.010 (5)
C13'0.097 (6)0.086 (5)0.086 (5)−0.018 (4)0.010 (4)−0.039 (4)
C14'0.068 (4)0.073 (4)0.077 (4)−0.020 (3)0.016 (4)−0.014 (3)
N10.0488 (12)0.0589 (13)0.0412 (11)0.0050 (9)0.0029 (9)−0.0033 (9)
O10.0876 (11)0.0800 (11)0.0870 (11)−0.0088 (8)0.0221 (9)−0.0209 (8)
O20.0876 (11)0.0800 (11)0.0870 (11)−0.0088 (8)0.0221 (9)−0.0209 (8)
Co1—N12.114 (2)C8—C91.465 (4)
Co1—N1i2.114 (2)C8—C9'1.544 (4)
Co1—O12.159 (2)C9—C101.3816 (16)
Co1—O1i2.159 (2)C9—C141.3816 (16)
Co1—O2i2.154 (2)C10—C111.3815 (16)
Co1—O22.154 (2)C10—H100.9300
Co1—C8i2.498 (3)C11—C121.3816 (16)
C1—C21.497 (4)C11—H110.9300
C1—H1A0.9600C12—C131.3816 (16)
C1—H1B0.9600C12—H120.9300
C1—H1C0.9600C13—C141.3816 (16)
C2—N11.339 (3)C13—H130.9300
C2—C31.406 (4)C14—H140.9300
C3—C41.349 (4)C9'—C10'1.3643 (16)
C3—H30.9300C9'—C14'1.3726 (16)
C4—C51.406 (4)C10'—C11'1.3726 (16)
C4—H40.9300C10'—H10'0.9300
C5—C61.406 (3)C11'—C12'1.3660 (16)
C5—C71.425 (4)C11'—H11'0.9300
C6—N11.360 (3)C12'—C13'1.3619 (15)
C6—C6i1.444 (5)C12'—H12'0.9300
C7—C7i1.353 (6)C13'—C14'1.3685 (16)
C7—H70.9300C13'—H13'0.9300
C8—O11.243 (3)C14'—H14'0.9300
C8—O21.249 (3)
N1—Co1—N1i79.73 (11)O1—C8—C9122.0 (3)
N1—Co1—O2i102.73 (9)O2—C8—C9118.4 (3)
N1i—Co1—O2i148.05 (8)O1—C8—C9'117.9 (3)
N1—Co1—O2148.05 (8)O2—C8—C9'122.7 (3)
N1i—Co1—O2102.73 (9)C10—C9—C14120.0
O2i—Co1—O291.74 (13)C10—C9—C8118.9 (2)
N1—Co1—O188.33 (8)C14—C9—C8121.1 (2)
N1i—Co1—O1102.08 (9)C11—C10—C9120.0
O2i—Co1—O1109.81 (9)C11—C10—H10120.0
O2—Co1—O159.85 (8)C9—C10—H10120.0
N1—Co1—O1i102.08 (9)C10—C11—C12120.0
N1i—Co1—O1i88.33 (8)C10—C11—H11120.0
O2i—Co1—O1i59.85 (8)C12—C11—H11120.0
O2—Co1—O1i109.81 (9)C11—C12—C13120.0
O1—Co1—O1i166.53 (12)C11—C12—H12120.0
N1—Co1—C8i104.54 (8)C13—C12—H12120.0
N1i—Co1—C8i118.14 (8)C12—C13—C14120.0
O2i—Co1—C8i30.01 (8)C12—C13—H13120.0
O2—Co1—C8i102.14 (9)C14—C13—H13120.0
O1—Co1—C8i139.20 (10)C9—C14—C13120.0
O1i—Co1—C8i29.84 (8)C9—C14—H14120.0
C2—C1—H1A109.5C13—C14—H14120.0
C2—C1—H1B109.5C10'—C9'—C14'119.2
H1A—C1—H1B109.5C10'—C9'—C8121.72 (19)
C2—C1—H1C109.5C14'—C9'—C8119.06 (19)
H1A—C1—H1C109.5C9'—C10'—C11'120.3
H1B—C1—H1C109.5C9'—C10'—H10'119.8
N1—C2—C3120.4 (3)C11'—C10'—H10'119.8
N1—C2—C1118.1 (3)C12'—C11'—C10'120.0
C3—C2—C1121.4 (3)C12'—C11'—H11'120.0
C4—C3—C2121.2 (3)C10'—C11'—H11'120.0
C4—C3—H3119.4C13'—C12'—C11'120.0
C2—C3—H3119.4C13'—C12'—H12'120.0
C3—C4—C5119.6 (3)C11'—C12'—H12'120.0
C3—C4—H4120.2C12'—C13'—C14'119.9
C5—C4—H4120.2C12'—C13'—H13'120.0
C4—C5—C6116.9 (3)C14'—C13'—H13'120.0
C4—C5—C7123.4 (3)C13'—C14'—C9'120.5
C6—C5—C7119.7 (2)C13'—C14'—H14'119.8
N1—C6—C5123.0 (2)C9'—C14'—H14'119.8
N1—C6—C6i117.74 (13)C2—N1—C6118.9 (2)
C5—C6—C6i119.30 (15)C2—N1—Co1128.61 (18)
C7i—C7—C5120.99 (16)C6—N1—Co1112.39 (15)
C7i—C7—H7119.5C8—O1—Co190.36 (19)
C5—C7—H7119.5C8—O2—Co190.41 (17)
O1—C8—O2119.4 (3)
N1—C2—C3—C4−0.8 (4)C3—C2—N1—C62.3 (4)
C1—C2—C3—C4179.2 (3)C1—C2—N1—C6−177.6 (2)
C2—C3—C4—C5−0.8 (4)C3—C2—N1—Co1178.41 (18)
C3—C4—C5—C60.8 (4)C1—C2—N1—Co1−1.5 (4)
C3—C4—C5—C7−179.4 (3)C5—C6—N1—C2−2.4 (3)
C4—C5—C6—N10.9 (4)C6i—C6—N1—C2177.8 (2)
C7—C5—C6—N1−179.0 (2)C5—C6—N1—Co1−179.10 (18)
C4—C5—C6—C6i−179.4 (2)C6i—C6—N1—Co11.2 (3)
C7—C5—C6—C6i0.8 (4)N1i—Co1—N1—C2−176.7 (3)
C4—C5—C7—C7i−179.9 (3)O2i—Co1—N1—C235.9 (2)
C6—C5—C7—C7i0.0 (5)O2—Co1—N1—C2−79.0 (3)
O1—C8—C9—C1011.2 (5)O1—Co1—N1—C2−74.1 (2)
O2—C8—C9—C10−174.2 (4)O1i—Co1—N1—C297.3 (2)
C9'—C8—C9—C10−49.13 (12)C8i—Co1—N1—C266.7 (2)
O1—C8—C9—C14−169.0 (5)N1i—Co1—N1—C6−0.41 (11)
O2—C8—C9—C145.7 (5)O2i—Co1—N1—C6−147.88 (16)
C9'—C8—C9—C14130.70 (19)O2—Co1—N1—C697.2 (2)
C14—C9—C10—C110.0O1—Co1—N1—C6102.19 (17)
C8—C9—C10—C11179.8 (3)O1i—Co1—N1—C6−86.45 (17)
C9—C10—C11—C120.0C8i—Co1—N1—C6−117.03 (16)
C10—C11—C12—C130.0O2—C8—O1—Co10.7 (3)
C11—C12—C13—C140.0C9—C8—O1—Co1175.3 (3)
C10—C9—C14—C130.0C9'—C8—O1—Co1−177.0 (2)
C8—C9—C14—C13−179.8 (3)N1—Co1—O1—C8−177.35 (18)
C12—C13—C14—C90.0N1i—Co1—O1—C8−98.22 (18)
O1—C8—C9'—C10'−20.3 (5)O2i—Co1—O1—C879.71 (19)
O2—C8—C9'—C10'162.1 (4)O2—Co1—O1—C8−0.39 (17)
C9—C8—C9'—C10'103.27 (16)O1i—Co1—O1—C841.69 (17)
O1—C8—C9'—C14'160.6 (4)C8i—Co1—O1—C872.1 (3)
O2—C8—C9'—C14'−17.0 (5)O1—C8—O2—Co1−0.7 (3)
C9—C8—C9'—C14'−75.85 (18)C9—C8—O2—Co1−175.5 (3)
C14'—C9'—C10'—C11'0.3C9'—C8—O2—Co1176.9 (3)
C8—C9'—C10'—C11'−178.9 (3)N1—Co1—O2—C86.1 (3)
C9'—C10'—C11'—C12'−0.3N1i—Co1—O2—C897.09 (18)
C10'—C11'—C12'—C13'0.6O2i—Co1—O2—C8−111.61 (19)
C11'—C12'—C13'—C14'−1.0O1—Co1—O2—C80.38 (17)
C12'—C13'—C14'—C9'1.0O1i—Co1—O2—C8−170.06 (17)
C10'—C9'—C14'—C13'−0.6C8i—Co1—O2—C8−140.01 (16)
C8—C9'—C14'—C13'178.5 (3)
Table 1

Selected bond lengths (Å)

Co1—N12.114 (2)
Co1—O12.159 (2)
Co1—O22.154 (2)
  2 in total

1.  DNA electrochemical biosensor for the detection of short DNA sequences related to the human immunodeficiency virus.

Authors:  J Wang; X Cai; G Rivas; H Shiraishi; P A Farias; N Dontha
Journal:  Anal Chem       Date:  1996-08-01       Impact factor: 6.986

2.  Tetraaqua(1,10-phenanthroline-kappa(2)N,N')cobalt(II) dinitrate: a hydrogen-bonded supramolecular network.

Authors:  Zhi Gang Li; Guan Hua Wang; Jia Jia Niu; Jing Wei Xu; Ning Hai Hu
Journal:  Acta Crystallogr C       Date:  2007-02-10       Impact factor: 1.172

  2 in total
  1 in total

1.  Aqua-(dicyanamido-κN)(2,9-dimethyl-1,10-phenanthroline-κN,N')(nitrato-κO,O')cobalt(II)-2,9-dimethyl-1,10-phenanthroline-water (2/1/2).

Authors:  Feng-Hua Cui; Pei-Zheng Zhao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-14
  1 in total

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