Literature DB >> 22065010

9-Hy-droxy-4,8-dimethyl-12-(pyrrolidin-1-ylmeth-yl)-3,14-dioxatricyclo-[9.3.0.0]tetra-dec-7-en-13-one.

Mohamed Moumou, Ahmed Benharref, Daniel Avignant, Abdelghani Oudahmane, Mohamed Akssira, Moha Berraho.   

Abstract

The title compound, C(19)H(29)O(4), was synthesized from 9α-hy-droxy-parthenolide (9α-hy-droxy-4,8-dimethyl-12-methylen-3,14-dioxatricyclo-[9.3.0.0(2,4)]tetra-dec-7-en-13-one), which was isolated from the chloro-form extract of the aerial parts of Anvillea radiata. The mol-ecule is built up from two fused five- and ten-membered rings with the pyrrolidin-1-ylmethyl group as a substituent. The five-membered lactone ring has an envelope conformation, whereas the ten-membered and pyrrolidine rings display approximate chair-chair and twisted conformations, respectively. The dihedral angle between the ten-membered ring and the lactone ring is 18.01 (19)°. An intra-molecular O-H⋯N hydrogen bond occurs. The crystal structure is stabilized by weak inter-molecular C-H⋯O hydrogen-bonding inter-actions.

Entities:  

Year:  2011        PMID: 22065010      PMCID: PMC3200593          DOI: 10.1107/S1600536811030467

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the isolation and biological activity of 9α-hy­droxy­parthenolide, see: Abdel Sattar et al. (1996 ▶); El Hassany et al. (2004 ▶). For the reactivity of this sesquiterpene, see: Castaneda-Acosta et al. (1993 ▶); Neukirch et al. (2003 ▶); Der-Ren et al. (2006 ▶); Neelakantan et al. (2009 ▶). For conformational analysis, see: Cremer & Pople (1975 ▶)

Experimental

Crystal data

C19H29NO4 M = 335.43 Orthorhombic, a = 8.1389 (6) Å b = 10.1788 (7) Å c = 21.7669 (15) Å V = 1803.3 (2) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 298 K 0.30 × 0.27 × 0.18 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.634, T max = 0.746 7656 measured reflections 2110 independent reflections 1220 reflections with I > 2σ(I) R int = 0.053

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.121 S = 0.99 2110 reflections 222 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.15 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2 and SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811030467/zl2390sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811030467/zl2390Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811030467/zl2390Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H29NO4F(000) = 728
Mr = 335.43Dx = 1.236 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 7656 reflections
a = 8.1389 (6) Åθ = 3.7–26.4°
b = 10.1788 (7) ŵ = 0.09 mm1
c = 21.7669 (15) ÅT = 298 K
V = 1803.3 (2) Å3PRISM, colourless
Z = 40.30 × 0.27 × 0.18 mm
Bruker APEXII CCD area-detector diffractometer2110 independent reflections
Radiation source: fine-focus sealed tube1220 reflections with I > 2σ(I)
graphiteRint = 0.053
Detector resolution: 8.3333 pixels mm-1θmax = 26.4°, θmin = 4.0°
φ and ω scansh = −10→9
Absorption correction: multi-scan (SADABS; Bruker, 2008)k = −10→12
Tmin = 0.634, Tmax = 0.746l = −16→27
7656 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H-atom parameters constrained
wR(F2) = 0.121w = 1/[σ2(Fo2) + (0.0601P)2] where P = (Fo2 + 2Fc2)/3
S = 0.99(Δ/σ)max < 0.001
2110 reflectionsΔρmax = 0.15 e Å3
222 parametersΔρmin = −0.15 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.017 (3)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
xyzUiso*/Ueq
C10.2577 (4)1.0264 (3)0.09346 (16)0.0496 (9)
H10.29821.10800.07490.059*
C30.1673 (5)1.0469 (4)0.15028 (16)0.0548 (10)
C40.1500 (5)1.1871 (4)0.16990 (18)0.0673 (11)
H4A0.24811.23460.15780.081*
H4B0.14301.19010.21440.081*
C5−0.0026 (5)1.2584 (4)0.14249 (19)0.0694 (12)
H5A−0.09841.23860.16740.083*
H5B0.01511.35260.14380.083*
C6−0.0347 (5)1.2170 (3)0.07708 (16)0.0508 (10)
H60.03911.24620.04750.061*
C7−0.1572 (4)1.1435 (3)0.05791 (15)0.0427 (8)
C8−0.1582 (4)1.0771 (3)−0.00454 (15)0.0462 (9)
H8−0.27221.0556−0.01500.055*
C9−0.0599 (4)0.9476 (3)−0.00085 (16)0.0441 (8)
H9A−0.08420.90510.03800.053*
H9B−0.09680.8897−0.03340.053*
C100.1272 (4)0.9652 (3)−0.00631 (15)0.0428 (8)
H100.14841.0592−0.01180.051*
C110.2305 (4)0.9192 (3)0.04834 (16)0.0469 (9)
H110.18110.84220.06800.056*
C120.3823 (5)0.8774 (3)−0.0393 (2)0.0580 (10)
C130.2083 (4)0.8935 (3)−0.05999 (17)0.0519 (10)
H130.15840.8063−0.06390.062*
C140.1989 (5)0.9619 (4)−0.12159 (17)0.0604 (11)
H14A0.24821.0483−0.11770.072*
H14B0.26350.9126−0.15110.072*
C15−0.0436 (6)0.8528 (4)−0.1647 (2)0.0802 (14)
H15A−0.08270.8038−0.12930.096*
H15B0.03330.7987−0.18740.096*
C16−0.1830 (7)0.8946 (5)−0.2044 (3)0.1017 (17)
H16A−0.28110.9096−0.18010.122*
H16B−0.20670.8285−0.23530.122*
C17−0.1246 (6)1.0221 (5)−0.23440 (19)0.0808 (14)
H17A−0.10371.0089−0.27780.097*
H17B−0.20651.0907−0.22980.097*
C180.0303 (6)1.0581 (4)−0.20152 (16)0.0690 (12)
H18A0.12531.0398−0.22700.083*
H18B0.03031.1507−0.19100.083*
C190.0421 (5)0.9509 (4)0.17490 (18)0.0735 (13)
H19A0.06280.86530.15810.110*
H19B−0.06620.97910.16340.110*
H19C0.04990.94740.21890.110*
C20−0.3045 (5)1.1034 (4)0.09593 (18)0.0682 (12)
H20A−0.29221.13610.13700.102*
H20B−0.31241.00930.09690.102*
H20C−0.40251.13930.07800.102*
N0.0336 (4)0.9768 (3)−0.14550 (13)0.0539 (8)
O10.5035 (4)0.8578 (3)−0.06984 (15)0.0824 (9)
O20.3922 (3)0.8876 (2)0.02235 (13)0.0600 (7)
O30.3332 (3)0.9963 (3)0.15201 (12)0.0662 (8)
O4−0.0948 (3)1.1599 (2)−0.05115 (11)0.0544 (7)
H4−0.07411.1161−0.08180.060 (13)*
U11U22U33U12U13U23
C10.040 (2)0.055 (2)0.054 (2)−0.0002 (18)−0.0123 (19)0.0075 (18)
C30.046 (2)0.071 (3)0.047 (2)0.004 (2)−0.0050 (19)0.011 (2)
C40.059 (3)0.088 (3)0.055 (2)0.000 (2)−0.009 (2)−0.010 (2)
C50.072 (3)0.070 (3)0.066 (3)0.007 (2)−0.003 (3)−0.012 (2)
C60.050 (2)0.049 (2)0.053 (2)0.0035 (18)−0.001 (2)−0.0002 (17)
C70.0356 (19)0.0471 (19)0.0454 (19)0.0053 (16)0.0035 (18)0.0030 (17)
C80.038 (2)0.054 (2)0.046 (2)−0.0014 (15)−0.0027 (18)0.0111 (18)
C90.043 (2)0.0413 (18)0.0484 (19)−0.0034 (15)−0.0035 (17)0.0050 (17)
C100.041 (2)0.0349 (17)0.052 (2)0.0005 (15)−0.0019 (18)0.0044 (16)
C110.038 (2)0.0424 (19)0.060 (2)0.0016 (15)−0.0031 (19)0.0104 (17)
C120.055 (3)0.041 (2)0.078 (3)0.0097 (19)0.009 (3)−0.0028 (19)
C130.051 (2)0.0458 (19)0.059 (2)−0.0019 (17)0.008 (2)−0.0038 (18)
C140.062 (3)0.064 (2)0.056 (2)0.004 (2)0.012 (2)−0.007 (2)
C150.106 (4)0.065 (3)0.069 (3)−0.026 (3)−0.011 (3)−0.011 (2)
C160.111 (4)0.109 (4)0.085 (3)−0.026 (4)−0.022 (3)−0.012 (3)
C170.091 (4)0.093 (3)0.059 (2)0.003 (3)−0.012 (3)−0.012 (2)
C180.083 (3)0.079 (3)0.045 (2)−0.009 (3)0.006 (2)0.004 (2)
C190.067 (3)0.089 (3)0.065 (2)−0.011 (3)0.002 (2)0.026 (2)
C200.046 (2)0.095 (3)0.064 (2)−0.002 (2)0.008 (2)0.001 (2)
N0.062 (2)0.0553 (18)0.0444 (16)−0.0090 (16)0.0040 (16)−0.0051 (15)
O10.068 (2)0.0735 (19)0.106 (2)0.0188 (16)0.0221 (19)−0.0043 (18)
O20.0461 (16)0.0548 (15)0.0791 (19)0.0125 (13)−0.0057 (14)0.0001 (13)
O30.0478 (16)0.0875 (19)0.0634 (16)0.0074 (14)−0.0176 (14)0.0097 (14)
O40.0635 (17)0.0531 (14)0.0466 (14)0.0046 (14)0.0035 (14)0.0102 (13)
C1—O31.448 (4)C12—O11.206 (4)
C1—C31.454 (5)C12—O21.349 (5)
C1—C111.485 (5)C12—C131.495 (5)
C1—H10.9800C13—C141.513 (5)
C3—O31.446 (4)C13—H130.9800
C3—C41.496 (5)C14—N1.450 (4)
C3—C191.510 (5)C14—H14A0.9700
C4—C51.558 (5)C14—H14B0.9700
C4—H4A0.9700C15—N1.470 (5)
C4—H4B0.9700C15—C161.489 (6)
C5—C61.508 (5)C15—H15A0.9700
C5—H5A0.9700C15—H15B0.9700
C5—H5B0.9700C16—C171.529 (6)
C6—C71.315 (4)C16—H16A0.9700
C6—H60.9300C16—H16B0.9700
C7—C201.513 (5)C17—C181.495 (6)
C7—C81.518 (5)C17—H17A0.9700
C8—O41.417 (4)C17—H17B0.9700
C8—C91.544 (5)C18—N1.474 (5)
C8—H80.9800C18—H18A0.9700
C9—C101.538 (4)C18—H18B0.9700
C9—H9A0.9700C19—H19A0.9600
C9—H9B0.9700C19—H19B0.9600
C10—C131.528 (5)C19—H19C0.9600
C10—C111.530 (4)C20—H20A0.9600
C10—H100.9800C20—H20B0.9600
C11—O21.468 (4)C20—H20C0.9600
C11—H110.9800O4—H40.8200
O3—C1—C359.8 (2)O2—C12—C13110.3 (3)
O3—C1—C11119.3 (3)C12—C13—C14111.4 (3)
C3—C1—C11126.3 (3)C12—C13—C10103.4 (3)
O3—C1—H1113.6C14—C13—C10115.8 (3)
C3—C1—H1113.6C12—C13—H13108.6
C11—C1—H1113.6C14—C13—H13108.6
O3—C3—C159.9 (2)C10—C13—H13108.6
O3—C3—C4114.9 (3)N—C14—C13114.4 (3)
C1—C3—C4115.3 (3)N—C14—H14A108.7
O3—C3—C19113.0 (3)C13—C14—H14A108.7
C1—C3—C19123.4 (4)N—C14—H14B108.7
C4—C3—C19116.9 (4)C13—C14—H14B108.7
C3—C4—C5114.2 (3)H14A—C14—H14B107.6
C3—C4—H4A108.7N—C15—C16104.2 (4)
C5—C4—H4A108.7N—C15—H15A110.9
C3—C4—H4B108.7C16—C15—H15A110.9
C5—C4—H4B108.7N—C15—H15B110.9
H4A—C4—H4B107.6C16—C15—H15B110.9
C6—C5—C4111.7 (3)H15A—C15—H15B108.9
C6—C5—H5A109.3C15—C16—C17104.7 (4)
C4—C5—H5A109.3C15—C16—H16A110.8
C6—C5—H5B109.3C17—C16—H16A110.8
C4—C5—H5B109.3C15—C16—H16B110.8
H5A—C5—H5B107.9C17—C16—H16B110.8
C7—C6—C5126.2 (4)H16A—C16—H16B108.9
C7—C6—H6116.9C18—C17—C16105.4 (4)
C5—C6—H6116.9C18—C17—H17A110.7
C6—C7—C20125.5 (3)C16—C17—H17A110.7
C6—C7—C8122.8 (3)C18—C17—H17B110.7
C20—C7—C8111.4 (3)C16—C17—H17B110.7
O4—C8—C7112.0 (3)H17A—C17—H17B108.8
O4—C8—C9110.9 (3)N—C18—C17105.9 (3)
C7—C8—C9109.3 (3)N—C18—H18A110.6
O4—C8—H8108.2C17—C18—H18A110.6
C7—C8—H8108.2N—C18—H18B110.6
C9—C8—H8108.2C17—C18—H18B110.6
C10—C9—C8114.2 (3)H18A—C18—H18B108.7
C10—C9—H9A108.7C3—C19—H19A109.5
C8—C9—H9A108.7C3—C19—H19B109.5
C10—C9—H9B108.7H19A—C19—H19B109.5
C8—C9—H9B108.7C3—C19—H19C109.5
H9A—C9—H9B107.6H19A—C19—H19C109.5
C13—C10—C11102.2 (3)H19B—C19—H19C109.5
C13—C10—C9115.6 (3)C7—C20—H20A109.5
C11—C10—C9116.6 (3)C7—C20—H20B109.5
C13—C10—H10107.3H20A—C20—H20B109.5
C11—C10—H10107.3C7—C20—H20C109.5
C9—C10—H10107.3H20A—C20—H20C109.5
O2—C11—C1106.4 (3)H20B—C20—H20C109.5
O2—C11—C10105.1 (3)C14—N—C15114.1 (3)
C1—C11—C10111.8 (3)C14—N—C18111.9 (3)
O2—C11—H11111.1C15—N—C18103.8 (3)
C1—C11—H11111.1C12—O2—C11110.3 (3)
C10—C11—H11111.1C3—O3—C160.3 (2)
O1—C12—O2120.8 (4)C8—O4—H4109.5
O1—C12—C13128.9 (4)
D—H···AD—HH···AD···AD—H···A
O4—H4···N0.822.172.964 (4)164
C1—H1···O4i0.982.573.533 (4)167
C11—H11···O1ii0.982.503.403 (4)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4⋯N0.822.172.964 (4)164
C1—H1⋯O4i0.982.573.533 (4)167
C11—H11⋯O1ii0.982.503.403 (4)154

Symmetry codes: (i) ; (ii) .

  8 in total

1.  Antitumor germacranolides from Anvillea garcinii.

Authors:  E Abdel Sattar; A M Galal; G S Mossa
Journal:  J Nat Prod       Date:  1996-04       Impact factor: 4.050

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Parthenolide and its photochemically synthesized 1(10)Z isomer: chemical reactivity and structure-activity relationship studies in human leucocyte chemotaxis.

Authors:  Hannes Neukirch; Nicole C Kaneider; Christian J Wiedermann; Antonio Guerriero; Michele D'Ambrosio
Journal:  Bioorg Med Chem       Date:  2003-04-03       Impact factor: 3.641

4.  Synthesis and anti-viral activity of a series of sesquiterpene lactones and analogues in the subgenomic HCV replicon system.

Authors:  Der-Ren Hwang; Yu-Shan Wu; Chun-Wei Chang; Tzu-Wen Lien; Wei-Cheng Chen; Uan-Kang Tan; John T A Hsu; Hsing-Pang Hsieh
Journal:  Bioorg Med Chem       Date:  2005-09-02       Impact factor: 3.641

5.  Biomimetic transformations of parthenolide.

Authors:  J Castañeda-Acosta; N H Fischer; D Vargas
Journal:  J Nat Prod       Date:  1993-01       Impact factor: 4.050

6.  Germacranolides from Anvillea radiata.

Authors:  B El Hassany; F El Hanbali; M Akssira; F Mellouki; A Haidour; A F Barrero
Journal:  Fitoterapia       Date:  2004-09       Impact factor: 2.882

7.  Aminoparthenolides as novel anti-leukemic agents: Discovery of the NF-kappaB inhibitor, DMAPT (LC-1).

Authors:  Sundar Neelakantan; Shama Nasim; Monica L Guzman; Craig T Jordan; Peter A Crooks
Journal:  Bioorg Med Chem Lett       Date:  2009-05-27       Impact factor: 2.823

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.