Literature DB >> 22064936

N-{(2S)-3-Hy-droxy-4-[(5-methyl-1,3,4-thia-diazol-2-yl)sulfan-yl]-1-phenyl-2-but-yl}-4-methyl-benzene-sulfonamide.

Claudia R B Gomes, Thatyana R A Vasconcelos, Walcimar T Vellasco Junior, Wilson Cunico, James L Wardell, Solange M S V Wardell, Edward R T Tiekink.   

Abstract

The thia-diazoyl and sulfonyl-benzene rings in the title compound, C(20)H(23)N(3)O(3)S(3), are aligned to the same side of the mol-ecule, forming a twisted 'U' shape [dihedral angle = 77.6 (5)°]. The benzyl-benzene ring is orientated in the opposite direction from the mol-ecule but projects approximately along the same axis as the other rings [dihedral angle between benzene rings = 28.2 (5)°] so that, overall, the mol-ecule has a flattened shape. The hy-droxy and amine groups are almost syn which enables the formation of inter-molecular hy-droxy-OH⋯N(thia-diazo-yl) and amine-H⋯O(sulfon-yl) hydrogen bonds leading to a supra-molecular chain aligned along the a axis.

Entities:  

Year:  2011        PMID: 22064936      PMCID: PMC3200695          DOI: 10.1107/S1600536811033575

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the use of amino alcohols in medicinal chemistry, see: Ferreira et al. (2009 ▶); de Oliveira et al. (2008 ▶); Brik & Wong (2003 ▶); Ghosh et al. (2001 ▶); Parikh et al. (2005 ▶); Andrews et al. (2006 ▶). For the anti-malarial activity of hy­droxy­ethyl­piperazines, see: Cunico, Gomes, Moreth et al. (2009 ▶). For the biological activity of hy­droxy­ethyl­sulfonamides, see: Cunico et al. (2008 ▶, 2011 ▶); Cunico, Gomes, Facchinetti et al. (2009 ▶). For related structures, see: Cunico, Gomes, Harrison et al. (2009 ▶); Gomes et al. (2011 ▶).

Experimental

Crystal data

C20H23N3O3S3 M = 449.59 Orthorhombic, a = 5.0420 (2) Å b = 18.4840 (8) Å c = 22.9650 (8) Å V = 2140.25 (15) Å3 Z = 4 Mo Kα radiation μ = 0.37 mm−1 T = 120 K 0.14 × 0.02 × 0.02 mm

Data collection

Bruker–Nonius Roper CCD camera on κ-goniostat diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.438, T max = 1.000 12594 measured reflections 2182 independent reflections 1538 reflections with I > 2σ(I) R int = 0.144

Refinement

R[F 2 > 2σ(F 2)] = 0.078 wR(F 2) = 0.206 S = 1.29 2182 reflections 270 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.48 e Å−3 Δρmin = −0.47 e Å−3 Absolute structure: nd Flack parameter: ? Rogers parameter: ? Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811033575/hb6366sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811033575/hb6366Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811033575/hb6366Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H23N3O3S3F(000) = 944
Mr = 449.59Dx = 1.395 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 20956 reflections
a = 5.0420 (2) Åθ = 2.9–27.5°
b = 18.4840 (8) ŵ = 0.37 mm1
c = 22.9650 (8) ÅT = 120 K
V = 2140.25 (15) Å3Needle, colourless
Z = 40.14 × 0.02 × 0.02 mm
Bruker–Nonius Roper CCD camera on κ-goniostat diffractometer2182 independent reflections
Radiation source: Bruker–Nonius FR591 rotating anode1538 reflections with I > 2σ(I)
graphiteRint = 0.144
Detector resolution: 9.091 pixels mm-1θmax = 25.0°, θmin = 3.4°
φ & ω scansh = −4→5
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)k = −20→21
Tmin = 0.438, Tmax = 1.000l = −27→26
12594 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.078H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.206w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3
S = 1.29(Δ/σ)max < 0.001
2182 reflectionsΔρmax = 0.48 e Å3
270 parametersΔρmin = −0.47 e Å3
2 restraintsAbsolute structure: nd
Primary atom site location: structure-invariant direct methods
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.1474 (5)0.17021 (13)0.05038 (10)0.0243 (6)
S20.3692 (5)0.07316 (15)0.14153 (11)0.0324 (7)
S30.2827 (4)0.01335 (13)−0.18450 (11)0.0222 (6)
O1−0.1857 (12)0.1270 (3)−0.0645 (3)0.0230 (15)
H1O−0.23 (2)0.097 (4)−0.039 (3)0.034*
O20.1680 (13)−0.0208 (3)−0.2346 (3)0.0246 (15)
O30.5507 (12)0.0390 (4)−0.1872 (3)0.0302 (17)
N10.5551 (15)0.0748 (5)0.0380 (4)0.027 (2)
N20.7075 (16)0.0234 (4)0.0689 (4)0.030 (2)
N30.0990 (15)0.0809 (4)−0.1688 (3)0.0205 (18)
H3N−0.074 (3)0.078 (5)−0.173 (4)0.025*
C10.3774 (19)0.1027 (5)0.0713 (4)0.023 (2)
C20.632 (2)0.0174 (5)0.1215 (4)0.029 (2)
C30.757 (2)−0.0339 (6)0.1642 (5)0.036 (3)
H3A0.6187−0.06340.18250.054*
H3B0.8512−0.00630.19430.054*
H3C0.8827−0.06550.14380.054*
C40.215 (2)0.1833 (5)−0.0267 (4)0.024 (2)
H4A0.14950.2316−0.03840.028*
H4B0.40990.1829−0.03260.028*
C50.0909 (18)0.1267 (5)−0.0661 (4)0.019 (2)
H50.15530.0778−0.05390.023*
C60.1811 (18)0.1406 (5)−0.1295 (4)0.020 (2)
H60.37910.1436−0.12990.024*
C70.264 (2)−0.0480 (5)−0.1259 (4)0.025 (2)
C80.058 (2)−0.0988 (6)−0.1256 (5)0.032 (3)
H8−0.0527−0.1045−0.15870.039*
C90.020 (2)−0.1406 (6)−0.0763 (5)0.038 (3)
H9−0.1215−0.1746−0.07500.046*
C100.189 (3)−0.1329 (6)−0.0285 (5)0.043 (3)
C110.395 (3)−0.0845 (6)−0.0296 (5)0.044 (3)
H110.5110−0.07970.00290.052*
C120.431 (2)−0.0421 (6)−0.0799 (5)0.033 (3)
H120.5749−0.0090−0.08160.040*
C130.135 (4)−0.1739 (7)0.0276 (6)0.073 (5)
H13A0.2824−0.16660.05460.110*
H13B0.1159−0.22550.01900.110*
H13C−0.0296−0.15590.04520.110*
C140.071 (2)0.2108 (5)−0.1548 (5)0.025 (2)
H14A−0.12300.2056−0.15980.031*
H14B0.10170.2504−0.12650.031*
C150.190 (2)0.2317 (5)−0.2115 (4)0.022 (2)
C160.399 (2)0.2813 (6)−0.2132 (5)0.034 (3)
H160.46150.3017−0.17770.041*
C170.519 (2)0.3018 (6)−0.2654 (5)0.038 (3)
H170.65930.3359−0.26550.046*
C180.433 (2)0.2729 (7)−0.3151 (6)0.045 (3)
H180.51460.2859−0.35090.054*
C190.227 (3)0.2243 (6)−0.3145 (5)0.047 (3)
H190.16610.2042−0.35010.056*
C200.108 (3)0.2043 (6)−0.2634 (5)0.039 (3)
H20−0.03480.1707−0.26420.046*
U11U22U33U12U13U23
S10.0275 (13)0.0300 (13)0.0153 (13)0.0022 (11)−0.0008 (10)−0.0003 (10)
S20.0342 (15)0.0430 (16)0.0201 (14)0.0050 (13)0.0017 (11)0.0089 (11)
S30.0178 (12)0.0274 (14)0.0213 (13)−0.0001 (10)0.0010 (9)−0.0063 (10)
O10.019 (3)0.029 (4)0.021 (4)−0.005 (3)0.002 (3)0.006 (3)
O20.027 (4)0.032 (4)0.015 (3)−0.010 (3)0.000 (3)−0.008 (3)
O30.017 (3)0.045 (4)0.029 (4)0.002 (3)0.001 (3)−0.006 (3)
N10.014 (4)0.044 (5)0.022 (5)−0.007 (4)0.004 (3)0.004 (4)
N20.027 (5)0.035 (5)0.028 (5)0.009 (4)−0.004 (4)0.004 (4)
N30.017 (4)0.026 (4)0.018 (4)−0.007 (3)−0.003 (3)−0.005 (3)
C10.018 (5)0.027 (5)0.024 (6)−0.013 (4)0.002 (4)−0.003 (4)
C20.033 (6)0.031 (6)0.024 (6)0.001 (5)−0.008 (5)0.003 (5)
C30.032 (6)0.041 (6)0.035 (7)0.009 (5)−0.002 (5)0.007 (5)
C40.036 (6)0.026 (5)0.009 (5)0.000 (5)0.001 (4)−0.003 (4)
C50.022 (5)0.018 (5)0.018 (5)0.008 (4)0.008 (4)0.004 (4)
C60.018 (5)0.021 (5)0.022 (5)0.002 (4)0.002 (4)−0.012 (4)
C70.028 (5)0.020 (5)0.026 (6)0.009 (4)0.002 (4)−0.001 (4)
C80.029 (6)0.043 (7)0.026 (6)0.006 (5)−0.002 (5)0.002 (5)
C90.051 (7)0.030 (6)0.034 (8)0.006 (5)−0.003 (5)0.003 (5)
C100.069 (9)0.039 (6)0.021 (7)0.024 (7)−0.011 (6)−0.004 (5)
C110.054 (8)0.042 (7)0.035 (7)0.015 (6)−0.021 (6)−0.001 (5)
C120.038 (6)0.032 (6)0.029 (7)−0.001 (5)−0.012 (5)−0.003 (5)
C130.123 (14)0.057 (9)0.040 (9)0.016 (10)0.001 (9)0.005 (7)
C140.030 (6)0.019 (5)0.027 (6)−0.002 (4)0.004 (4)−0.002 (4)
C150.030 (6)0.025 (5)0.011 (5)0.008 (4)−0.001 (4)−0.004 (4)
C160.033 (6)0.042 (7)0.027 (6)−0.010 (5)−0.003 (5)0.006 (5)
C170.040 (7)0.036 (7)0.038 (8)−0.011 (5)−0.003 (5)0.009 (6)
C180.048 (7)0.050 (8)0.036 (8)0.003 (6)0.012 (6)0.012 (6)
C190.089 (10)0.041 (7)0.010 (6)0.002 (7)0.007 (6)0.001 (5)
C200.048 (7)0.039 (6)0.030 (7)−0.009 (5)0.001 (6)0.009 (5)
S1—C11.770 (10)C7—C81.397 (14)
S1—C41.818 (9)C8—C91.384 (16)
S2—C11.704 (10)C8—H80.9500
S2—C21.742 (11)C9—C101.397 (16)
S3—O31.433 (7)C9—H90.9500
S3—O21.435 (6)C10—C111.374 (18)
S3—N31.596 (8)C10—C131.518 (18)
S3—C71.763 (10)C11—C121.407 (16)
O1—C51.395 (11)C11—H110.9500
O1—H1O0.838 (11)C12—H120.9500
N1—C11.285 (12)C13—H13A0.9800
N1—N21.414 (11)C13—H13B0.9800
N2—C21.271 (13)C13—H13C0.9800
N3—C61.485 (11)C14—C151.484 (14)
N3—H3N0.878 (11)C14—H14A0.9900
C2—C31.504 (14)C14—H14B0.9900
C3—H3A0.9800C15—C201.361 (15)
C3—H3B0.9800C15—C161.398 (14)
C3—H3C0.9800C16—C171.395 (16)
C4—C51.520 (13)C16—H160.9500
C4—H4A0.9900C17—C181.332 (17)
C4—H4B0.9900C17—H170.9500
C5—C61.546 (13)C18—C191.374 (17)
C5—H51.0000C18—H180.9500
C6—C141.526 (13)C19—C201.369 (16)
C6—H61.0000C19—H190.9500
C7—C121.357 (15)C20—H200.9500
C1—S1—C4103.5 (5)C8—C7—S3118.4 (8)
C1—S2—C285.4 (5)C9—C8—C7118.9 (11)
O3—S3—O2119.4 (4)C9—C8—H8120.6
O3—S3—N3107.4 (4)C7—C8—H8120.6
O2—S3—N3107.0 (4)C8—C9—C10120.0 (12)
O3—S3—C7107.3 (5)C8—C9—H9120.0
O2—S3—C7107.9 (4)C10—C9—H9120.0
N3—S3—C7107.4 (4)C11—C10—C9120.9 (11)
C5—O1—H1O105 (8)C11—C10—C13118.5 (12)
C1—N1—N2110.5 (8)C9—C10—C13120.4 (14)
C2—N2—N1111.9 (8)C10—C11—C12118.3 (10)
C6—N3—S3123.9 (6)C10—C11—H11120.8
C6—N3—H3N112 (6)C12—C11—H11120.8
S3—N3—H3N121 (6)C7—C12—C11121.0 (10)
N1—C1—S2116.9 (8)C7—C12—H12119.5
N1—C1—S1125.3 (8)C11—C12—H12119.5
S2—C1—S1117.8 (6)C10—C13—H13A109.5
N2—C2—C3123.4 (10)C10—C13—H13B109.5
N2—C2—S2115.3 (7)H13A—C13—H13B109.5
C3—C2—S2121.3 (8)C10—C13—H13C109.5
C2—C3—H3A109.5H13A—C13—H13C109.5
C2—C3—H3B109.5H13B—C13—H13C109.5
H3A—C3—H3B109.5C15—C14—C6114.1 (8)
C2—C3—H3C109.5C15—C14—H14A108.7
H3A—C3—H3C109.5C6—C14—H14A108.7
H3B—C3—H3C109.5C15—C14—H14B108.7
C5—C4—S1114.2 (7)C6—C14—H14B108.7
C5—C4—H4A108.7H14A—C14—H14B107.6
S1—C4—H4A108.7C20—C15—C16116.7 (9)
C5—C4—H4B108.7C20—C15—C14123.3 (9)
S1—C4—H4B108.7C16—C15—C14120.0 (9)
H4A—C4—H4B107.6C17—C16—C15121.9 (10)
O1—C5—C4113.2 (8)C17—C16—H16119.1
O1—C5—C6108.6 (8)C15—C16—H16119.1
C4—C5—C6109.0 (7)C18—C17—C16119.3 (11)
O1—C5—H5108.7C18—C17—H17120.4
C4—C5—H5108.7C16—C17—H17120.4
C6—C5—H5108.7C17—C18—C19119.8 (12)
N3—C6—C14107.5 (8)C17—C18—H18120.1
N3—C6—C5111.4 (8)C19—C18—H18120.1
C14—C6—C5113.1 (7)C20—C19—C18121.2 (12)
N3—C6—H6108.2C20—C19—H19119.4
C14—C6—H6108.2C18—C19—H19119.4
C5—C6—H6108.2C15—C20—C19121.1 (11)
C12—C7—C8120.7 (10)C15—C20—H20119.4
C12—C7—S3120.7 (8)C19—C20—H20119.4
C1—N1—N2—C2−0.1 (12)O3—S3—C7—C8−158.1 (8)
O3—S3—N3—C6−35.0 (9)O2—S3—C7—C8−28.3 (9)
O2—S3—N3—C6−164.3 (7)N3—S3—C7—C886.7 (8)
C7—S3—N3—C680.1 (8)C12—C7—C8—C93.3 (15)
N2—N1—C1—S20.5 (10)S3—C7—C8—C9−171.4 (8)
N2—N1—C1—S1179.0 (6)C7—C8—C9—C10−1.5 (16)
C2—S2—C1—N1−0.6 (8)C8—C9—C10—C11−0.5 (18)
C2—S2—C1—S1−179.2 (6)C8—C9—C10—C13174.9 (11)
C4—S1—C1—N13.4 (9)C9—C10—C11—C120.7 (17)
C4—S1—C1—S2−178.2 (5)C13—C10—C11—C12−174.8 (11)
N1—N2—C2—C3179.3 (9)C8—C7—C12—C11−3.1 (16)
N1—N2—C2—S2−0.3 (11)S3—C7—C12—C11171.4 (8)
C1—S2—C2—N20.5 (8)C10—C11—C12—C71.1 (17)
C1—S2—C2—C3−179.1 (9)N3—C6—C14—C15−66.3 (10)
C1—S1—C4—C580.3 (8)C5—C6—C14—C15170.2 (8)
S1—C4—C5—O163.4 (9)C6—C14—C15—C2082.7 (12)
S1—C4—C5—C6−175.7 (6)C6—C14—C15—C16−96.6 (11)
S3—N3—C6—C14141.8 (7)C20—C15—C16—C17−0.1 (16)
S3—N3—C6—C5−93.7 (9)C14—C15—C16—C17179.2 (10)
O1—C5—C6—N3−64.8 (9)C15—C16—C17—C18−0.6 (17)
C4—C5—C6—N3171.5 (7)C16—C17—C18—C190.9 (18)
O1—C5—C6—C1456.5 (10)C17—C18—C19—C20−0.5 (19)
C4—C5—C6—C14−67.3 (10)C16—C15—C20—C190.5 (16)
O3—S3—C7—C1227.3 (10)C14—C15—C20—C19−178.8 (11)
O2—S3—C7—C12157.1 (8)C18—C19—C20—C15−0.2 (19)
N3—S3—C7—C12−87.9 (9)
D—H···AD—HH···AD···AD—H···A
O1—H1O···N1i0.84 (7)2.11 (8)2.860 (11)148 (8)
N3—H3N···O3i0.88 (2)2.05 (4)2.902 (10)163 (9)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O⋯N1i0.84 (7)2.11 (8)2.860 (11)148 (8)
N3—H3N⋯O3i0.88 (2)2.05 (4)2.902 (10)163 (9)

Symmetry code: (i) .

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Authors:  Wilson Cunico; Claudia R B Gomes; Victor Facchinetti; Marcele Moreth; Carmen Penido; Maria G M O Henriques; Fernando P Varotti; Luisa G Krettli; Antoniana U Krettli; Franklin S da Silva; Ernesto R Caffarena; Camila S de Magalhães
Journal:  Eur J Med Chem       Date:  2009-04-08       Impact factor: 6.514

8.  Synthesis and antimalarial activity of hydroxyethylpiperazine derivatives.

Authors:  Wilson Cunico; Claudia R B Gomes; Marcele Moreth; Diogo P Manhanini; Isabela H Figueiredo; Carmen Penido; Maria G M O Henriques; Fernando P Varotti; Antoniana U Krettli
Journal:  Eur J Med Chem       Date:  2008-04-29       Impact factor: 6.514

9.  tert-Butyl N-[3-hy-droxy-1-phenyl-4-(pyrimidin-2-ylsulfan-yl)butan-2-yl]carbamate monohydrate.

Authors:  Claudia R B Gomes; Thatyana R A Vasconcelos; Walcimar T Vellasco; James L Wardell; Solange M S V Wardell; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-11
  9 in total

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