Literature DB >> 22062192

Cortical cartography and Caret software.

David C Van Essen1.   

Abstract

Caret software is widely used for analyzing and visualizing many types of fMRI data, often in conjunction with experimental data from other modalities. This article places Caret's development in a historical context that spans three decades of brain mapping--from the early days of manually generated flat maps to the nascent field of human connectomics. It also highlights some of Caret's distinctive capabilities. This includes the ease of visualizing data on surfaces and/or volumes and on atlases as well as individual subjects. Caret can display many types of experimental data using various combinations of overlays (e.g., fMRI activation maps, cortical parcellations, areal boundaries), and it has other features that facilitate the analysis and visualization of complex neuroimaging datasets.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 22062192      PMCID: PMC3288593          DOI: 10.1016/j.neuroimage.2011.10.077

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  47 in total

1.  Cortical parcellations of the macaque monkey analyzed on surface-based atlases.

Authors:  David C Van Essen; Matthew F Glasser; Donna L Dierker; John Harwell
Journal:  Cereb Cortex       Date:  2011-11-02       Impact factor: 5.357

2.  CRUISE: cortical reconstruction using implicit surface evolution.

Authors:  Xiao Han; Dzung L Pham; Duygu Tosun; Maryam E Rettmann; Chenyang Xu; Jerry L Prince
Journal:  Neuroimage       Date:  2004-11       Impact factor: 6.556

Review 3.  Distributed hierarchical processing in the primate cerebral cortex.

Authors:  D J Felleman; D C Van Essen
Journal:  Cereb Cortex       Date:  1991 Jan-Feb       Impact factor: 5.357

4.  Automated landmark identification for human cortical surface-based registration.

Authors:  Alan Anticevic; Grega Repovs; Donna L Dierker; John W Harwell; Timothy S Coalson; Deanna M Barch; David C Van Essen
Journal:  Neuroimage       Date:  2011-09-08       Impact factor: 6.556

5.  Computational methods for reconstructing and unfolding the cerebral cortex.

Authors:  G J Carman; H A Drury; D C Van Essen
Journal:  Cereb Cortex       Date:  1995 Nov-Dec       Impact factor: 5.357

6.  Areal differences in the laminar distribution of thalamic afferents in cortical fields of the insular, parietal and temporal regions of primates.

Authors:  E G Jones; H Burton
Journal:  J Comp Neurol       Date:  1976-07-15       Impact factor: 3.215

7.  A stereotactic method of anatomical localization for positron emission tomography.

Authors:  P T Fox; J S Perlmutter; M E Raichle
Journal:  J Comput Assist Tomogr       Date:  1985 Jan-Feb       Impact factor: 1.826

8.  Functional specializations in human cerebral cortex analyzed using the Visible Man surface-based atlas.

Authors:  H A Drury; D C Van Essen
Journal:  Hum Brain Mapp       Date:  1997       Impact factor: 5.038

9.  Informatics and data mining tools and strategies for the human connectome project.

Authors:  Daniel S Marcus; John Harwell; Timothy Olsen; Michael Hodge; Matthew F Glasser; Fred Prior; Mark Jenkinson; Timothy Laumann; Sandra W Curtiss; David C Van Essen
Journal:  Front Neuroinform       Date:  2011-06-27       Impact factor: 4.081

10.  Cortical folding patterns and predicting cytoarchitecture.

Authors:  Bruce Fischl; Niranjini Rajendran; Evelina Busa; Jean Augustinack; Oliver Hinds; B T Thomas Yeo; Hartmut Mohlberg; Katrin Amunts; Karl Zilles
Journal:  Cereb Cortex       Date:  2007-12-12       Impact factor: 5.357

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  44 in total

1.  Prenatal domoic acid exposure disrupts mouse pro-social behavior and functional connectivity MRI.

Authors:  Brian D Mills; Hadley L Pearce; Omar Khan; Ben R Jarrett; Damien A Fair; Garet P Lahvis
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2.  Gamma Synchronization between V1 and V4 Improves Behavioral Performance.

Authors:  Gustavo Rohenkohl; Conrado Arturo Bosman; Pascal Fries
Journal:  Neuron       Date:  2018-10-11       Impact factor: 17.173

3.  Spreading dynamics on spatially constrained complex brain networks.

Authors:  Reuben O'Dea; Jonathan J Crofts; Marcus Kaiser
Journal:  J R Soc Interface       Date:  2013-02-13       Impact factor: 4.118

4.  Generalized role for the cerebellum in encoding internal models: evidence from semantic processing.

Authors:  Torgeir Moberget; Eva Hilland Gullesen; Stein Andersson; Richard B Ivry; Tor Endestad
Journal:  J Neurosci       Date:  2014-02-19       Impact factor: 6.167

Review 5.  Parcellating Cerebral Cortex: How Invasive Animal Studies Inform Noninvasive Mapmaking in Humans.

Authors:  David C Van Essen; Matthew F Glasser
Journal:  Neuron       Date:  2018-08-22       Impact factor: 17.173

6.  Brain activity in struggling readers before intervention relates to future reading gains.

Authors:  Tehila Nugiel; Mary Abbe Roe; W Patrick Taylor; Paul T Cirino; Sharon R Vaughn; Jack M Fletcher; Jenifer Juranek; Jessica A Church
Journal:  Cortex       Date:  2018-11-16       Impact factor: 4.027

7.  Functional MRI of visual responses in the awake, behaving marmoset.

Authors:  Chia-Chun Hung; Cecil C Yen; Jennifer L Ciuchta; Daniel Papoti; Nicholas A Bock; David A Leopold; Afonso C Silva
Journal:  Neuroimage       Date:  2015-07-03       Impact factor: 6.556

8.  The impact of traditional neuroimaging methods on the spatial localization of cortical areas.

Authors:  Timothy S Coalson; David C Van Essen; Matthew F Glasser
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-20       Impact factor: 11.205

9.  Four-dimensional maps of the human somatosensory system.

Authors:  Pietro Avanzini; Rouhollah O Abdollahi; Ivana Sartori; Fausto Caruana; Veronica Pelliccia; Giuseppe Casaceli; Roberto Mai; Giorgio Lo Russo; Giacomo Rizzolatti; Guy A Orban
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-14       Impact factor: 11.205

10.  Visuomotor discordance during visually-guided hand movement in virtual reality modulates sensorimotor cortical activity in healthy and hemiparetic subjects.

Authors:  Eugene Tunik; Soha Saleh; Sergei V Adamovich
Journal:  IEEE Trans Neural Syst Rehabil Eng       Date:  2013-01-09       Impact factor: 3.802

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