| Literature DB >> 22059060 |
Mehrdad Pourayoubi, Fatemeh Karimi Ahmadabad, Marek Nečas.
Abstract
The title compound, C(20)H(21)N(2)O(2)P, was synthesized from (RS)-(C(6)H(5)O)P(O)Cl(NHC(6)H(4)-p-CH(3)) and benzyl-amine. The product crystallizes as a racemate in a polar space group. The phospho-rus atom has a distorted tetra-hedral configuration: the bond angles at the P atom are in the range 103.2 (1)-118.4 (1)°. The P-N(benzyl-amido) bond [1.615 (2) Å] is slightly shorter than the P-N(p-tolyl-amido) bond [1.630 (2) Å]. Both N-H groups adopt an anti orientation relative to the phosphoryl group. In the crystal, the adjacent mol-ecules are linked via N-H⋯O hydrogen bonds, forming R(2) (2)(8) rings, into a one-dimensional arrangement parallel to the x axis.Entities:
Year: 2011 PMID: 22059060 PMCID: PMC3200931 DOI: 10.1107/S1600536811034465
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H21N2O2P | |
| Mo | |
| Orthorhombic, | Cell parameters from 10547 reflections |
| θ = 3.0–27.2° | |
| µ = 0.17 mm−1 | |
| Plate, colorless | |
| 0.30 × 0.30 × 0.10 mm | |
| Xcalibur, Sapphire2, large Be window diffractometer | 3200 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 2823 reflections with |
| graphite | |
| Detector resolution: 8.4353 pixels mm-1 | θmax = 25.0°, θmin = 3.0° |
| ω scan | |
| Absorption correction: multi-scan ( | |
| 20413 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 3200 reflections | Δρmax = 0.51 e Å−3 |
| 233 parameters | Δρmin = −0.29 e Å−3 |
| 1 restraint | Absolute structure: Flack (1983), 1523 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.01 (10) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| P1 | 0.91905 (5) | 0.99930 (4) | 0.56899 (5) | 0.01847 (16) | |
| O1 | 0.84602 (16) | 1.07673 (12) | 0.64256 (11) | 0.0217 (4) | |
| O2 | 0.80162 (17) | 0.94641 (13) | 0.52605 (12) | 0.0247 (4) | |
| N1 | 1.0250 (2) | 0.92421 (16) | 0.62255 (15) | 0.0241 (5) | |
| H1N | 1.098 (3) | 0.944 (2) | 0.630 (2) | 0.029* | |
| N2 | 1.0197 (2) | 1.06729 (15) | 0.50236 (15) | 0.0217 (5) | |
| H2N | 1.107 (3) | 1.062 (2) | 0.5071 (19) | 0.026* | |
| C1 | 0.9250 (2) | 1.1424 (2) | 0.69810 (16) | 0.0207 (6) | |
| C2 | 0.9809 (3) | 1.1052 (2) | 0.78124 (17) | 0.0264 (6) | |
| H2C | 0.9699 | 1.0356 | 0.7987 | 0.032* | |
| C3 | 1.0533 (3) | 1.1733 (2) | 0.83765 (18) | 0.0297 (6) | |
| H3A | 1.0940 | 1.1494 | 0.8938 | 0.036* | |
| C4 | 1.0667 (3) | 1.2738 (2) | 0.81375 (18) | 0.0290 (6) | |
| H4A | 1.1156 | 1.3192 | 0.8535 | 0.035* | |
| C5 | 1.0088 (3) | 1.3098 (2) | 0.73111 (18) | 0.0283 (6) | |
| H5A | 1.0182 | 1.3798 | 0.7143 | 0.034* | |
| C6 | 0.9375 (3) | 1.2432 (2) | 0.67366 (17) | 0.0249 (6) | |
| H6A | 0.8974 | 1.2674 | 0.6174 | 0.030* | |
| C7 | 0.9737 (3) | 0.83908 (19) | 0.67821 (18) | 0.0273 (6) | |
| H7A | 0.8801 | 0.8564 | 0.7006 | 0.033* | |
| H7B | 1.0336 | 0.8315 | 0.7337 | 0.033* | |
| C8 | 0.9671 (3) | 0.73740 (18) | 0.62858 (16) | 0.0225 (5) | |
| C9 | 0.8580 (3) | 0.6727 (2) | 0.6440 (2) | 0.0360 (7) | |
| H9A | 0.7840 | 0.6945 | 0.6826 | 0.043* | |
| C10 | 0.8539 (4) | 0.5761 (2) | 0.6042 (2) | 0.0503 (9) | |
| H10A | 0.7787 | 0.5316 | 0.6167 | 0.060* | |
| C11 | 0.9596 (4) | 0.5448 (2) | 0.54621 (18) | 0.0436 (8) | |
| H11A | 0.9573 | 0.4789 | 0.5184 | 0.052* | |
| C12 | 1.0667 (3) | 0.6091 (2) | 0.52932 (19) | 0.0368 (7) | |
| H12A | 1.1394 | 0.5876 | 0.4895 | 0.044* | |
| C13 | 1.0716 (3) | 0.70547 (18) | 0.5693 (2) | 0.0282 (5) | |
| H13A | 1.1467 | 0.7498 | 0.5561 | 0.034* | |
| C14 | 0.9794 (3) | 1.15603 (17) | 0.45273 (16) | 0.0196 (5) | |
| C15 | 1.0762 (3) | 1.23182 (19) | 0.43674 (17) | 0.0246 (5) | |
| H15A | 1.1680 | 1.2239 | 0.4588 | 0.030* | |
| C16 | 1.0383 (3) | 1.3201 (2) | 0.38799 (19) | 0.0296 (6) | |
| H16A | 1.1061 | 1.3707 | 0.3753 | 0.036* | |
| C17 | 0.9042 (3) | 1.33547 (18) | 0.35774 (16) | 0.0258 (6) | |
| C18 | 0.8104 (3) | 1.25870 (19) | 0.37405 (16) | 0.0249 (6) | |
| H18A | 0.7182 | 1.2670 | 0.3530 | 0.030* | |
| C19 | 0.8467 (3) | 1.16882 (19) | 0.42071 (16) | 0.0229 (5) | |
| H19A | 0.7799 | 1.1167 | 0.4303 | 0.027* | |
| C20 | 0.8653 (3) | 1.4309 (2) | 0.3061 (2) | 0.0364 (7) | |
| H20A | 0.7646 | 1.4369 | 0.3040 | 0.055* | |
| H20B | 0.9017 | 1.4276 | 0.2424 | 0.055* | |
| H20C | 0.9041 | 1.4905 | 0.3381 | 0.055* |
| P1 | 0.0170 (3) | 0.0230 (3) | 0.0154 (3) | −0.0002 (3) | 0.0001 (3) | 0.0003 (2) |
| O1 | 0.0207 (9) | 0.0288 (9) | 0.0155 (8) | 0.0002 (7) | −0.0003 (7) | −0.0013 (7) |
| O2 | 0.0199 (9) | 0.0295 (10) | 0.0247 (8) | −0.0025 (7) | −0.0001 (7) | −0.0008 (7) |
| N1 | 0.0185 (11) | 0.0276 (12) | 0.0261 (12) | −0.0036 (10) | −0.0027 (10) | 0.0003 (9) |
| N2 | 0.0153 (11) | 0.0287 (11) | 0.0211 (10) | 0.0021 (9) | −0.0001 (9) | 0.0026 (9) |
| C1 | 0.0165 (13) | 0.0302 (14) | 0.0154 (12) | −0.0025 (10) | 0.0021 (9) | −0.0065 (10) |
| C2 | 0.0320 (15) | 0.0292 (13) | 0.0180 (11) | 0.0010 (11) | −0.0026 (11) | 0.0026 (11) |
| C3 | 0.0307 (15) | 0.0421 (16) | 0.0163 (12) | 0.0023 (13) | −0.0032 (11) | −0.0008 (12) |
| C4 | 0.0274 (14) | 0.0378 (15) | 0.0217 (13) | −0.0048 (12) | −0.0014 (11) | −0.0077 (11) |
| C5 | 0.0308 (16) | 0.0282 (14) | 0.0260 (15) | −0.0039 (12) | 0.0044 (12) | −0.0031 (12) |
| C6 | 0.0239 (14) | 0.0340 (14) | 0.0167 (11) | 0.0031 (11) | 0.0007 (10) | 0.0015 (11) |
| C7 | 0.0368 (17) | 0.0260 (14) | 0.0190 (13) | 0.0026 (12) | −0.0008 (12) | 0.0046 (11) |
| C8 | 0.0241 (13) | 0.0262 (13) | 0.0173 (12) | 0.0033 (11) | −0.0028 (10) | 0.0056 (10) |
| C9 | 0.0355 (16) | 0.0454 (16) | 0.0272 (14) | −0.0088 (13) | 0.0049 (12) | −0.0043 (13) |
| C10 | 0.066 (2) | 0.0461 (18) | 0.0387 (16) | −0.0296 (17) | 0.0033 (17) | −0.0012 (14) |
| C11 | 0.083 (2) | 0.0280 (14) | 0.0199 (14) | −0.0073 (16) | −0.0028 (14) | −0.0025 (11) |
| C12 | 0.054 (2) | 0.0357 (15) | 0.0201 (13) | 0.0115 (14) | 0.0042 (13) | 0.0011 (11) |
| C13 | 0.0289 (14) | 0.0316 (13) | 0.0240 (12) | 0.0016 (10) | 0.0020 (12) | 0.0081 (13) |
| C14 | 0.0214 (14) | 0.0257 (13) | 0.0118 (12) | 0.0031 (11) | 0.0044 (10) | −0.0037 (10) |
| C15 | 0.0229 (14) | 0.0327 (13) | 0.0184 (12) | 0.0010 (11) | −0.0016 (10) | −0.0015 (11) |
| C16 | 0.0361 (17) | 0.0274 (13) | 0.0254 (13) | −0.0051 (12) | 0.0057 (12) | −0.0009 (11) |
| C17 | 0.0368 (16) | 0.0279 (14) | 0.0128 (12) | 0.0071 (11) | 0.0029 (10) | −0.0027 (10) |
| C18 | 0.0252 (14) | 0.0341 (14) | 0.0154 (12) | 0.0058 (11) | 0.0008 (10) | −0.0026 (11) |
| C19 | 0.0237 (14) | 0.0295 (13) | 0.0154 (11) | 0.0002 (11) | 0.0010 (10) | −0.0004 (10) |
| C20 | 0.0481 (18) | 0.0310 (14) | 0.0302 (14) | 0.0037 (14) | 0.0008 (13) | 0.0023 (12) |
| P1—O2 | 1.4679 (17) | C8—C13 | 1.387 (4) |
| P1—N1 | 1.615 (2) | C9—C10 | 1.386 (4) |
| P1—O1 | 1.6250 (17) | C9—H9A | 0.9500 |
| P1—N2 | 1.630 (2) | C10—C11 | 1.382 (4) |
| O1—C1 | 1.400 (3) | C10—H10A | 0.9500 |
| N1—C7 | 1.457 (3) | C11—C12 | 1.358 (4) |
| N1—H1N | 0.76 (3) | C11—H11A | 0.9500 |
| N2—C14 | 1.416 (3) | C12—C13 | 1.385 (4) |
| N2—H2N | 0.86 (3) | C12—H12A | 0.9500 |
| C1—C6 | 1.369 (4) | C13—H13A | 0.9500 |
| C1—C2 | 1.398 (4) | C14—C19 | 1.377 (4) |
| C2—C3 | 1.393 (4) | C14—C15 | 1.385 (3) |
| C2—H2C | 0.9500 | C15—C16 | 1.399 (4) |
| C3—C4 | 1.364 (4) | C15—H15A | 0.9500 |
| C3—H3A | 0.9500 | C16—C17 | 1.386 (4) |
| C4—C5 | 1.394 (4) | C16—H16A | 0.9500 |
| C4—H4A | 0.9500 | C17—C18 | 1.375 (4) |
| C5—C6 | 1.384 (4) | C17—C20 | 1.499 (3) |
| C5—H5A | 0.9500 | C18—C19 | 1.397 (4) |
| C6—H6A | 0.9500 | C18—H18A | 0.9500 |
| C7—C8 | 1.510 (4) | C19—H19A | 0.9500 |
| C7—H7A | 0.9900 | C20—H20A | 0.9800 |
| C7—H7B | 0.9900 | C20—H20B | 0.9800 |
| C8—C9 | 1.373 (4) | C20—H20C | 0.9800 |
| O2—P1—N1 | 114.00 (11) | C8—C9—C10 | 121.1 (3) |
| O2—P1—O1 | 103.17 (9) | C8—C9—H9A | 119.4 |
| N1—P1—O1 | 110.30 (11) | C10—C9—H9A | 119.4 |
| O2—P1—N2 | 118.39 (11) | C11—C10—C9 | 119.8 (3) |
| N1—P1—N2 | 103.28 (11) | C11—C10—H10A | 120.1 |
| O1—P1—N2 | 107.58 (10) | C9—C10—H10A | 120.1 |
| C1—O1—P1 | 120.90 (14) | C12—C11—C10 | 119.4 (3) |
| C7—N1—P1 | 120.54 (18) | C12—C11—H11A | 120.3 |
| C7—N1—H1N | 120 (2) | C10—C11—H11A | 120.3 |
| P1—N1—H1N | 117 (2) | C11—C12—C13 | 121.0 (3) |
| C14—N2—P1 | 125.18 (18) | C11—C12—H12A | 119.5 |
| C14—N2—H2N | 112.1 (18) | C13—C12—H12A | 119.5 |
| P1—N2—H2N | 120.5 (19) | C12—C13—C8 | 120.2 (2) |
| C6—C1—C2 | 121.3 (2) | C12—C13—H13A | 119.9 |
| C6—C1—O1 | 119.6 (2) | C8—C13—H13A | 119.9 |
| C2—C1—O1 | 118.9 (2) | C19—C14—C15 | 119.5 (2) |
| C3—C2—C1 | 117.9 (2) | C19—C14—N2 | 121.7 (2) |
| C3—C2—H2C | 121.1 | C15—C14—N2 | 118.8 (2) |
| C1—C2—H2C | 121.1 | C14—C15—C16 | 119.7 (2) |
| C4—C3—C2 | 121.2 (2) | C14—C15—H15A | 120.2 |
| C4—C3—H3A | 119.4 | C16—C15—H15A | 120.2 |
| C2—C3—H3A | 119.4 | C17—C16—C15 | 121.5 (2) |
| C3—C4—C5 | 120.1 (3) | C17—C16—H16A | 119.2 |
| C3—C4—H4A | 120.0 | C15—C16—H16A | 119.2 |
| C5—C4—H4A | 120.0 | C18—C17—C16 | 117.5 (2) |
| C6—C5—C4 | 119.7 (2) | C18—C17—C20 | 121.7 (2) |
| C6—C5—H5A | 120.2 | C16—C17—C20 | 120.8 (2) |
| C4—C5—H5A | 120.2 | C17—C18—C19 | 121.9 (2) |
| C1—C6—C5 | 119.8 (2) | C17—C18—H18A | 119.0 |
| C1—C6—H6A | 120.1 | C19—C18—H18A | 119.0 |
| C5—C6—H6A | 120.1 | C14—C19—C18 | 119.8 (2) |
| N1—C7—C8 | 115.4 (2) | C14—C19—H19A | 120.1 |
| N1—C7—H7A | 108.4 | C18—C19—H19A | 120.1 |
| C8—C7—H7A | 108.4 | C17—C20—H20A | 109.5 |
| N1—C7—H7B | 108.4 | C17—C20—H20B | 109.5 |
| C8—C7—H7B | 108.4 | H20A—C20—H20B | 109.5 |
| H7A—C7—H7B | 107.5 | C17—C20—H20C | 109.5 |
| C9—C8—C13 | 118.5 (2) | H20A—C20—H20C | 109.5 |
| C9—C8—C7 | 119.9 (2) | H20B—C20—H20C | 109.5 |
| C13—C8—C7 | 121.6 (2) | ||
| O2—P1—O1—C1 | −179.64 (16) | N1—C7—C8—C13 | 41.2 (3) |
| N1—P1—O1—C1 | 58.23 (19) | C13—C8—C9—C10 | 2.3 (4) |
| N2—P1—O1—C1 | −53.74 (19) | C7—C8—C9—C10 | −175.7 (3) |
| O2—P1—N1—C7 | −40.2 (2) | C8—C9—C10—C11 | −1.5 (5) |
| O1—P1—N1—C7 | 75.3 (2) | C9—C10—C11—C12 | 0.3 (5) |
| N2—P1—N1—C7 | −169.97 (18) | C10—C11—C12—C13 | 0.0 (4) |
| O2—P1—N2—C14 | 64.2 (2) | C11—C12—C13—C8 | 0.8 (4) |
| N1—P1—N2—C14 | −168.78 (18) | C9—C8—C13—C12 | −1.9 (4) |
| O1—P1—N2—C14 | −52.1 (2) | C7—C8—C13—C12 | 176.0 (2) |
| P1—O1—C1—C6 | 100.9 (2) | P1—N2—C14—C19 | −30.3 (3) |
| P1—O1—C1—C2 | −83.8 (2) | P1—N2—C14—C15 | 149.3 (2) |
| C6—C1—C2—C3 | −1.6 (4) | C19—C14—C15—C16 | −0.3 (4) |
| O1—C1—C2—C3 | −176.8 (2) | N2—C14—C15—C16 | −179.9 (2) |
| C1—C2—C3—C4 | 1.4 (4) | C14—C15—C16—C17 | 2.2 (4) |
| C2—C3—C4—C5 | −0.7 (4) | C15—C16—C17—C18 | −2.6 (4) |
| C3—C4—C5—C6 | 0.1 (4) | C15—C16—C17—C20 | 179.6 (2) |
| C2—C1—C6—C5 | 1.1 (4) | C16—C17—C18—C19 | 1.1 (3) |
| O1—C1—C6—C5 | 176.3 (2) | C20—C17—C18—C19 | 178.9 (2) |
| C4—C5—C6—C1 | −0.3 (4) | C15—C14—C19—C18 | −1.2 (3) |
| P1—N1—C7—C8 | 94.9 (3) | N2—C14—C19—C18 | 178.4 (2) |
| N1—C7—C8—C9 | −140.9 (3) | C17—C18—C19—C14 | 0.8 (3) |
| H··· | ||||
| N1—H1N···O1i | 0.76 (3) | 2.43 (3) | 3.127 (3) | 153 (3) |
| N2—H2N···O2i | 0.86 (3) | 1.91 (3) | 2.761 (3) | 176 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.76 (3) | 2.43 (3) | 3.127 (3) | 153 (3) |
| N2—H2 | 0.86 (3) | 1.91 (3) | 2.761 (3) | 176 (3) |
Symmetry code: (i) .