Literature DB >> 22059060

rac-Phenyl (benzylamido)(p-tolyl-amido)-phosphinate.

Mehrdad Pourayoubi, Fatemeh Karimi Ahmadabad, Marek Nečas.   

Abstract

The title compound, C(20)H(21)N(2)O(2)P, was synthesized from (RS)-(C(6)H(5)O)P(O)Cl(NHC(6)H(4)-p-CH(3)) and benzyl-amine. The product crystallizes as a racemate in a polar space group. The phospho-rus atom has a distorted tetra-hedral configuration: the bond angles at the P atom are in the range 103.2 (1)-118.4 (1)°. The P-N(benzyl-amido) bond [1.615 (2) Å] is slightly shorter than the P-N(p-tolyl-amido) bond [1.630 (2) Å]. Both N-H groups adopt an anti orientation relative to the phosphoryl group. In the crystal, the adjacent mol-ecules are linked via N-H⋯O hydrogen bonds, forming R(2) (2)(8) rings, into a one-dimensional arrangement parallel to the x axis.

Entities:  

Year:  2011        PMID: 22059060      PMCID: PMC3200931          DOI: 10.1107/S1600536811034465

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related mixed-amido phosphinate derivative and its mol­ecular geometry, see: Sabbaghi et al. (2011 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C20H21N2O2P M = 352.36 Orthorhombic, a = 9.6986 (5) Å b = 13.0751 (6) Å c = 14.3446 (5) Å V = 1819.04 (14) Å3 Z = 4 Mo Kα radiation μ = 0.17 mm−1 T = 120 K 0.30 × 0.30 × 0.10 mm

Data collection

Xcalibur, Sapphire2, large Be window diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.785, T max = 1.000 20413 measured reflections 3200 independent reflections 2823 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.099 S = 1.00 3200 reflections 233 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.51 e Å−3 Δρmin = −0.29 e Å−3 Absolute structure: Flack (1983 ▶), 1526 Friedel pairs Flack parameter: 0.01 (10) Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: enCIFer (Allen et al., 2004 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811034465/ld2023sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811034465/ld2023Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H21N2O2PDx = 1.287 Mg m3
Mr = 352.36Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, Pca21Cell parameters from 10547 reflections
a = 9.6986 (5) Åθ = 3.0–27.2°
b = 13.0751 (6) ŵ = 0.17 mm1
c = 14.3446 (5) ÅT = 120 K
V = 1819.04 (14) Å3Plate, colorless
Z = 40.30 × 0.30 × 0.10 mm
F(000) = 744
Xcalibur, Sapphire2, large Be window diffractometer3200 independent reflections
Radiation source: Enhance (Mo) X-ray Source2823 reflections with I > 2σ(I)
graphiteRint = 0.047
Detector resolution: 8.4353 pixels mm-1θmax = 25.0°, θmin = 3.0°
ω scanh = −11→9
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −15→15
Tmin = 0.785, Tmax = 1.000l = −17→17
20413 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.099w = 1/[σ2(Fo2) + (0.073P)2] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
3200 reflectionsΔρmax = 0.51 e Å3
233 parametersΔρmin = −0.29 e Å3
1 restraintAbsolute structure: Flack (1983), 1523 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.01 (10)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.91905 (5)0.99930 (4)0.56899 (5)0.01847 (16)
O10.84602 (16)1.07673 (12)0.64256 (11)0.0217 (4)
O20.80162 (17)0.94641 (13)0.52605 (12)0.0247 (4)
N11.0250 (2)0.92421 (16)0.62255 (15)0.0241 (5)
H1N1.098 (3)0.944 (2)0.630 (2)0.029*
N21.0197 (2)1.06729 (15)0.50236 (15)0.0217 (5)
H2N1.107 (3)1.062 (2)0.5071 (19)0.026*
C10.9250 (2)1.1424 (2)0.69810 (16)0.0207 (6)
C20.9809 (3)1.1052 (2)0.78124 (17)0.0264 (6)
H2C0.96991.03560.79870.032*
C31.0533 (3)1.1733 (2)0.83765 (18)0.0297 (6)
H3A1.09401.14940.89380.036*
C41.0667 (3)1.2738 (2)0.81375 (18)0.0290 (6)
H4A1.11561.31920.85350.035*
C51.0088 (3)1.3098 (2)0.73111 (18)0.0283 (6)
H5A1.01821.37980.71430.034*
C60.9375 (3)1.2432 (2)0.67366 (17)0.0249 (6)
H6A0.89741.26740.61740.030*
C70.9737 (3)0.83908 (19)0.67821 (18)0.0273 (6)
H7A0.88010.85640.70060.033*
H7B1.03360.83150.73370.033*
C80.9671 (3)0.73740 (18)0.62858 (16)0.0225 (5)
C90.8580 (3)0.6727 (2)0.6440 (2)0.0360 (7)
H9A0.78400.69450.68260.043*
C100.8539 (4)0.5761 (2)0.6042 (2)0.0503 (9)
H10A0.77870.53160.61670.060*
C110.9596 (4)0.5448 (2)0.54621 (18)0.0436 (8)
H11A0.95730.47890.51840.052*
C121.0667 (3)0.6091 (2)0.52932 (19)0.0368 (7)
H12A1.13940.58760.48950.044*
C131.0716 (3)0.70547 (18)0.5693 (2)0.0282 (5)
H13A1.14670.74980.55610.034*
C140.9794 (3)1.15603 (17)0.45273 (16)0.0196 (5)
C151.0762 (3)1.23182 (19)0.43674 (17)0.0246 (5)
H15A1.16801.22390.45880.030*
C161.0383 (3)1.3201 (2)0.38799 (19)0.0296 (6)
H16A1.10611.37070.37530.036*
C170.9042 (3)1.33547 (18)0.35774 (16)0.0258 (6)
C180.8104 (3)1.25870 (19)0.37405 (16)0.0249 (6)
H18A0.71821.26700.35300.030*
C190.8467 (3)1.16882 (19)0.42071 (16)0.0229 (5)
H19A0.77991.11670.43030.027*
C200.8653 (3)1.4309 (2)0.3061 (2)0.0364 (7)
H20A0.76461.43690.30400.055*
H20B0.90171.42760.24240.055*
H20C0.90411.49050.33810.055*
U11U22U33U12U13U23
P10.0170 (3)0.0230 (3)0.0154 (3)−0.0002 (3)0.0001 (3)0.0003 (2)
O10.0207 (9)0.0288 (9)0.0155 (8)0.0002 (7)−0.0003 (7)−0.0013 (7)
O20.0199 (9)0.0295 (10)0.0247 (8)−0.0025 (7)−0.0001 (7)−0.0008 (7)
N10.0185 (11)0.0276 (12)0.0261 (12)−0.0036 (10)−0.0027 (10)0.0003 (9)
N20.0153 (11)0.0287 (11)0.0211 (10)0.0021 (9)−0.0001 (9)0.0026 (9)
C10.0165 (13)0.0302 (14)0.0154 (12)−0.0025 (10)0.0021 (9)−0.0065 (10)
C20.0320 (15)0.0292 (13)0.0180 (11)0.0010 (11)−0.0026 (11)0.0026 (11)
C30.0307 (15)0.0421 (16)0.0163 (12)0.0023 (13)−0.0032 (11)−0.0008 (12)
C40.0274 (14)0.0378 (15)0.0217 (13)−0.0048 (12)−0.0014 (11)−0.0077 (11)
C50.0308 (16)0.0282 (14)0.0260 (15)−0.0039 (12)0.0044 (12)−0.0031 (12)
C60.0239 (14)0.0340 (14)0.0167 (11)0.0031 (11)0.0007 (10)0.0015 (11)
C70.0368 (17)0.0260 (14)0.0190 (13)0.0026 (12)−0.0008 (12)0.0046 (11)
C80.0241 (13)0.0262 (13)0.0173 (12)0.0033 (11)−0.0028 (10)0.0056 (10)
C90.0355 (16)0.0454 (16)0.0272 (14)−0.0088 (13)0.0049 (12)−0.0043 (13)
C100.066 (2)0.0461 (18)0.0387 (16)−0.0296 (17)0.0033 (17)−0.0012 (14)
C110.083 (2)0.0280 (14)0.0199 (14)−0.0073 (16)−0.0028 (14)−0.0025 (11)
C120.054 (2)0.0357 (15)0.0201 (13)0.0115 (14)0.0042 (13)0.0011 (11)
C130.0289 (14)0.0316 (13)0.0240 (12)0.0016 (10)0.0020 (12)0.0081 (13)
C140.0214 (14)0.0257 (13)0.0118 (12)0.0031 (11)0.0044 (10)−0.0037 (10)
C150.0229 (14)0.0327 (13)0.0184 (12)0.0010 (11)−0.0016 (10)−0.0015 (11)
C160.0361 (17)0.0274 (13)0.0254 (13)−0.0051 (12)0.0057 (12)−0.0009 (11)
C170.0368 (16)0.0279 (14)0.0128 (12)0.0071 (11)0.0029 (10)−0.0027 (10)
C180.0252 (14)0.0341 (14)0.0154 (12)0.0058 (11)0.0008 (10)−0.0026 (11)
C190.0237 (14)0.0295 (13)0.0154 (11)0.0002 (11)0.0010 (10)−0.0004 (10)
C200.0481 (18)0.0310 (14)0.0302 (14)0.0037 (14)0.0008 (13)0.0023 (12)
P1—O21.4679 (17)C8—C131.387 (4)
P1—N11.615 (2)C9—C101.386 (4)
P1—O11.6250 (17)C9—H9A0.9500
P1—N21.630 (2)C10—C111.382 (4)
O1—C11.400 (3)C10—H10A0.9500
N1—C71.457 (3)C11—C121.358 (4)
N1—H1N0.76 (3)C11—H11A0.9500
N2—C141.416 (3)C12—C131.385 (4)
N2—H2N0.86 (3)C12—H12A0.9500
C1—C61.369 (4)C13—H13A0.9500
C1—C21.398 (4)C14—C191.377 (4)
C2—C31.393 (4)C14—C151.385 (3)
C2—H2C0.9500C15—C161.399 (4)
C3—C41.364 (4)C15—H15A0.9500
C3—H3A0.9500C16—C171.386 (4)
C4—C51.394 (4)C16—H16A0.9500
C4—H4A0.9500C17—C181.375 (4)
C5—C61.384 (4)C17—C201.499 (3)
C5—H5A0.9500C18—C191.397 (4)
C6—H6A0.9500C18—H18A0.9500
C7—C81.510 (4)C19—H19A0.9500
C7—H7A0.9900C20—H20A0.9800
C7—H7B0.9900C20—H20B0.9800
C8—C91.373 (4)C20—H20C0.9800
O2—P1—N1114.00 (11)C8—C9—C10121.1 (3)
O2—P1—O1103.17 (9)C8—C9—H9A119.4
N1—P1—O1110.30 (11)C10—C9—H9A119.4
O2—P1—N2118.39 (11)C11—C10—C9119.8 (3)
N1—P1—N2103.28 (11)C11—C10—H10A120.1
O1—P1—N2107.58 (10)C9—C10—H10A120.1
C1—O1—P1120.90 (14)C12—C11—C10119.4 (3)
C7—N1—P1120.54 (18)C12—C11—H11A120.3
C7—N1—H1N120 (2)C10—C11—H11A120.3
P1—N1—H1N117 (2)C11—C12—C13121.0 (3)
C14—N2—P1125.18 (18)C11—C12—H12A119.5
C14—N2—H2N112.1 (18)C13—C12—H12A119.5
P1—N2—H2N120.5 (19)C12—C13—C8120.2 (2)
C6—C1—C2121.3 (2)C12—C13—H13A119.9
C6—C1—O1119.6 (2)C8—C13—H13A119.9
C2—C1—O1118.9 (2)C19—C14—C15119.5 (2)
C3—C2—C1117.9 (2)C19—C14—N2121.7 (2)
C3—C2—H2C121.1C15—C14—N2118.8 (2)
C1—C2—H2C121.1C14—C15—C16119.7 (2)
C4—C3—C2121.2 (2)C14—C15—H15A120.2
C4—C3—H3A119.4C16—C15—H15A120.2
C2—C3—H3A119.4C17—C16—C15121.5 (2)
C3—C4—C5120.1 (3)C17—C16—H16A119.2
C3—C4—H4A120.0C15—C16—H16A119.2
C5—C4—H4A120.0C18—C17—C16117.5 (2)
C6—C5—C4119.7 (2)C18—C17—C20121.7 (2)
C6—C5—H5A120.2C16—C17—C20120.8 (2)
C4—C5—H5A120.2C17—C18—C19121.9 (2)
C1—C6—C5119.8 (2)C17—C18—H18A119.0
C1—C6—H6A120.1C19—C18—H18A119.0
C5—C6—H6A120.1C14—C19—C18119.8 (2)
N1—C7—C8115.4 (2)C14—C19—H19A120.1
N1—C7—H7A108.4C18—C19—H19A120.1
C8—C7—H7A108.4C17—C20—H20A109.5
N1—C7—H7B108.4C17—C20—H20B109.5
C8—C7—H7B108.4H20A—C20—H20B109.5
H7A—C7—H7B107.5C17—C20—H20C109.5
C9—C8—C13118.5 (2)H20A—C20—H20C109.5
C9—C8—C7119.9 (2)H20B—C20—H20C109.5
C13—C8—C7121.6 (2)
O2—P1—O1—C1−179.64 (16)N1—C7—C8—C1341.2 (3)
N1—P1—O1—C158.23 (19)C13—C8—C9—C102.3 (4)
N2—P1—O1—C1−53.74 (19)C7—C8—C9—C10−175.7 (3)
O2—P1—N1—C7−40.2 (2)C8—C9—C10—C11−1.5 (5)
O1—P1—N1—C775.3 (2)C9—C10—C11—C120.3 (5)
N2—P1—N1—C7−169.97 (18)C10—C11—C12—C130.0 (4)
O2—P1—N2—C1464.2 (2)C11—C12—C13—C80.8 (4)
N1—P1—N2—C14−168.78 (18)C9—C8—C13—C12−1.9 (4)
O1—P1—N2—C14−52.1 (2)C7—C8—C13—C12176.0 (2)
P1—O1—C1—C6100.9 (2)P1—N2—C14—C19−30.3 (3)
P1—O1—C1—C2−83.8 (2)P1—N2—C14—C15149.3 (2)
C6—C1—C2—C3−1.6 (4)C19—C14—C15—C16−0.3 (4)
O1—C1—C2—C3−176.8 (2)N2—C14—C15—C16−179.9 (2)
C1—C2—C3—C41.4 (4)C14—C15—C16—C172.2 (4)
C2—C3—C4—C5−0.7 (4)C15—C16—C17—C18−2.6 (4)
C3—C4—C5—C60.1 (4)C15—C16—C17—C20179.6 (2)
C2—C1—C6—C51.1 (4)C16—C17—C18—C191.1 (3)
O1—C1—C6—C5176.3 (2)C20—C17—C18—C19178.9 (2)
C4—C5—C6—C1−0.3 (4)C15—C14—C19—C18−1.2 (3)
P1—N1—C7—C894.9 (3)N2—C14—C19—C18178.4 (2)
N1—C7—C8—C9−140.9 (3)C17—C18—C19—C140.8 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O1i0.76 (3)2.43 (3)3.127 (3)153 (3)
N2—H2N···O2i0.86 (3)1.91 (3)2.761 (3)176 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O1i0.76 (3)2.43 (3)3.127 (3)153 (3)
N2—H2N⋯O2i0.86 (3)1.91 (3)2.761 (3)176 (3)

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  O-Phenyl (cyclo-hexyl-amido)(p-tolyl-amido)-phosphinate.

Authors:  Fahimeh Sabbaghi; Mehrdad Pourayoubi; Fatemeh Karimi Ahmadabad; Masood Parvez
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-25
  2 in total
  1 in total

1.  O-Phenyl (tert-butyl-amido)(p-tolyl-amido)-phosphinate.

Authors:  Mehrdad Pourayoubi; Arnold L Rheingold; Chao Chen; Fatemeh Karimi Ahmadabad; Atekeh Tarahhomi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-23
  1 in total

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