Literature DB >> 22058978

5-[(E)-(2-Fluoro-benzyl-idene)amino]-2-hy-droxy-benzoic acid.

M Nawaz Tahir, Muhammad Ilyas Tariq, Riaz H Tariq.   

Abstract

In the title compound, C(14)H(10)FNO(3), the dihedral angle between the two benzene rings is 32.66 (14)°. An S(6) ring motif is formed due to an intra-molecular O-H⋯O hydrogen bond between the hy-droxy and carbonyl groups. In the crystal, mol-ecules are consolidated into dimers with R(2) (2)(8) ring motifs by pairs of O-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 22058978      PMCID: PMC3200747          DOI: 10.1107/S160053681103162X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background and related crystal structures, see: Tahir & Shad (2010 ▶); Tahir et al. (2010a ▶,b ▶,c ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C14H10FNO3 M = 259.23 Monoclinic, a = 15.5688 (16) Å b = 4.7139 (4) Å c = 16.2248 (16) Å β = 92.412 (4)° V = 1189.7 (2) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 296 K 0.30 × 0.22 × 0.18 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.972, T max = 0.983 15880 measured reflections 2161 independent reflections 1156 reflections with I > 2σ(I) R int = 0.079

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.127 S = 1.01 2161 reflections 179 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681103162X/tk2774sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681103162X/tk2774Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681103162X/tk2774Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H10FNO3F(000) = 536
Mr = 259.23Dx = 1.447 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1156 reflections
a = 15.5688 (16) Åθ = 2.5–25.3°
b = 4.7139 (4) ŵ = 0.11 mm1
c = 16.2248 (16) ÅT = 296 K
β = 92.412 (4)°Prism, violet
V = 1189.7 (2) Å30.30 × 0.22 × 0.18 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer2161 independent reflections
Radiation source: fine-focus sealed tube1156 reflections with I > 2σ(I)
graphiteRint = 0.079
Detector resolution: 8.10 pixels mm-1θmax = 25.3°, θmin = 2.5°
ω scansh = −18→18
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −5→5
Tmin = 0.972, Tmax = 0.983l = −19→19
15880 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.127w = 1/[σ2(Fo2) + (0.0531P)2 + 0.0687P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
2161 reflectionsΔρmax = 0.17 e Å3
179 parametersΔρmin = −0.16 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.012 (2)
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.52929 (12)−0.3124 (5)0.56845 (13)0.1012 (9)
O10.06399 (12)0.7307 (4)0.55258 (12)0.0525 (8)
O20.05067 (11)0.8698 (4)0.42115 (11)0.0495 (7)
O30.14217 (13)0.6175 (4)0.31108 (12)0.0542 (8)
N10.28499 (15)−0.0194 (4)0.57191 (14)0.0515 (9)
C10.08505 (17)0.7167 (5)0.47509 (18)0.0417 (10)
C20.15088 (16)0.5080 (5)0.45759 (15)0.0375 (9)
C30.17635 (17)0.4699 (5)0.37661 (17)0.0434 (10)
C40.23883 (18)0.2707 (6)0.36048 (19)0.0519 (11)
C50.27501 (17)0.1124 (6)0.42340 (19)0.0514 (11)
C60.25157 (17)0.1477 (5)0.50467 (18)0.0442 (10)
C70.18911 (17)0.3435 (5)0.52047 (17)0.0432 (9)
C80.3618 (2)−0.1094 (6)0.57106 (19)0.0549 (11)
C90.39800 (18)−0.2991 (5)0.63403 (18)0.0487 (11)
C100.4808 (2)−0.4013 (6)0.6308 (2)0.0584 (11)
C110.5166 (2)−0.5910 (7)0.6868 (2)0.0656 (12)
C120.4681 (2)−0.6790 (7)0.7506 (2)0.0651 (12)
C130.3861 (2)−0.5771 (7)0.7575 (2)0.0671 (12)
C140.35127 (19)−0.3924 (6)0.70003 (19)0.0607 (11)
H10.0276 (18)0.869 (6)0.5597 (16)0.0630*
H30.1029 (18)0.734 (6)0.3343 (18)0.0651*
H40.256170.244730.306850.0624*
H50.31634−0.022480.411630.0618*
H70.171900.366880.574250.0518*
H80.39610−0.052020.528580.0659*
H110.57227−0.657800.681500.0788*
H120.49076−0.807440.789220.0777*
H130.35381−0.634100.801530.0803*
H140.29529−0.328040.705280.0729*
U11U22U33U12U13U23
F10.0551 (12)0.1469 (19)0.1031 (17)0.0089 (12)0.0211 (12)0.0358 (14)
O10.0594 (14)0.0547 (12)0.0440 (13)0.0135 (10)0.0101 (10)−0.0004 (10)
O20.0534 (13)0.0504 (12)0.0450 (12)0.0078 (10)0.0043 (10)0.0038 (10)
O30.0612 (14)0.0565 (13)0.0456 (13)0.0044 (10)0.0096 (10)0.0015 (10)
N10.0474 (16)0.0455 (14)0.0613 (17)0.0035 (12)−0.0011 (13)0.0003 (12)
C10.0439 (18)0.0368 (15)0.0443 (18)−0.0081 (14)0.0023 (15)−0.0009 (14)
C20.0398 (16)0.0336 (14)0.0391 (17)−0.0055 (12)0.0034 (13)−0.0014 (13)
C30.0431 (17)0.0398 (15)0.0476 (18)−0.0057 (14)0.0050 (14)0.0029 (14)
C40.053 (2)0.0519 (18)0.0517 (19)−0.0005 (16)0.0132 (16)−0.0083 (16)
C50.0437 (18)0.0448 (17)0.066 (2)0.0021 (14)0.0058 (16)−0.0085 (16)
C60.0419 (17)0.0376 (15)0.0529 (19)−0.0046 (14)0.0009 (14)−0.0005 (14)
C70.0454 (17)0.0377 (15)0.0469 (17)−0.0032 (13)0.0075 (14)−0.0038 (13)
C80.049 (2)0.0498 (17)0.066 (2)−0.0056 (15)0.0025 (16)0.0062 (16)
C90.0419 (18)0.0461 (17)0.058 (2)0.0001 (14)0.0006 (15)−0.0005 (15)
C100.0444 (19)0.068 (2)0.063 (2)−0.0011 (17)0.0061 (17)0.0017 (18)
C110.049 (2)0.078 (2)0.069 (2)0.0194 (18)−0.0075 (18)−0.0099 (19)
C120.065 (2)0.068 (2)0.061 (2)0.0096 (18)−0.0120 (19)0.0010 (17)
C130.056 (2)0.085 (2)0.060 (2)0.0020 (19)−0.0019 (17)0.0117 (19)
C140.0460 (19)0.069 (2)0.067 (2)0.0058 (17)0.0003 (17)0.0043 (18)
F1—C101.354 (4)C8—C91.454 (4)
O1—C11.314 (3)C9—C141.391 (4)
O2—C11.239 (3)C9—C101.379 (4)
O3—C31.360 (3)C10—C111.376 (4)
O1—H10.88 (3)C11—C121.371 (5)
O3—H30.92 (3)C12—C131.373 (4)
N1—C61.426 (3)C13—C141.371 (4)
N1—C81.270 (4)C4—H40.9300
C1—C21.457 (4)C5—H50.9300
C2—C71.395 (4)C7—H70.9300
C2—C31.400 (4)C8—H80.9300
C3—C41.385 (4)C11—H110.9300
C4—C51.367 (4)C12—H120.9300
C5—C61.393 (4)C13—H130.9300
C6—C71.373 (4)C14—H140.9300
C1—O1—H1110.7 (17)F1—C10—C9118.1 (3)
C3—O3—H3103.4 (18)F1—C10—C11118.1 (3)
C6—N1—C8119.3 (2)C10—C11—C12118.3 (3)
O1—C1—O2121.9 (2)C11—C12—C13120.0 (3)
O1—C1—C2115.2 (2)C12—C13—C14120.6 (3)
O2—C1—C2122.8 (3)C9—C14—C13121.3 (3)
C1—C2—C3119.9 (2)C3—C4—H4120.00
C3—C2—C7119.1 (2)C5—C4—H4120.00
C1—C2—C7121.0 (2)C4—C5—H5119.00
O3—C3—C4117.0 (2)C6—C5—H5119.00
O3—C3—C2123.4 (2)C2—C7—H7119.00
C2—C3—C4119.6 (2)C6—C7—H7119.00
C3—C4—C5120.0 (3)N1—C8—H8119.00
C4—C5—C6121.7 (3)C9—C8—H8119.00
C5—C6—C7118.2 (3)C10—C11—H11121.00
N1—C6—C7117.8 (2)C12—C11—H11121.00
N1—C6—C5123.8 (2)C11—C12—H12120.00
C2—C7—C6121.4 (3)C13—C12—H12120.00
N1—C8—C9122.4 (3)C12—C13—H13120.00
C10—C9—C14116.0 (3)C14—C13—H13120.00
C8—C9—C10121.6 (3)C9—C14—H14119.00
C8—C9—C14122.4 (3)C13—C14—H14119.00
C9—C10—C11123.7 (3)
C8—N1—C6—C533.0 (4)C4—C5—C6—C71.4 (4)
C8—N1—C6—C7−150.8 (3)N1—C6—C7—C2−177.6 (2)
C6—N1—C8—C9−175.0 (2)C5—C6—C7—C2−1.3 (4)
O1—C1—C2—C3178.2 (2)N1—C8—C9—C10178.1 (3)
O1—C1—C2—C7−1.6 (3)N1—C8—C9—C14−0.8 (4)
O2—C1—C2—C3−1.4 (4)C8—C9—C10—F12.2 (4)
O2—C1—C2—C7178.8 (2)C8—C9—C10—C11−177.0 (3)
C1—C2—C3—O3−0.6 (4)C14—C9—C10—F1−178.9 (3)
C1—C2—C3—C4−179.9 (2)C14—C9—C10—C111.9 (4)
C7—C2—C3—O3179.2 (2)C8—C9—C14—C13178.3 (3)
C7—C2—C3—C4−0.1 (4)C10—C9—C14—C13−0.6 (4)
C1—C2—C7—C6−179.6 (2)F1—C10—C11—C12179.2 (3)
C3—C2—C7—C60.6 (4)C9—C10—C11—C12−1.6 (5)
O3—C3—C4—C5−179.1 (2)C10—C11—C12—C13−0.2 (5)
C2—C3—C4—C50.2 (4)C11—C12—C13—C141.5 (5)
C3—C4—C5—C6−0.8 (4)C12—C13—C14—C9−1.1 (5)
C4—C5—C6—N1177.5 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1···O2i0.88 (3)1.77 (3)2.642 (3)176 (3)
O3—H3···O20.92 (3)1.78 (3)2.617 (3)152 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O2i0.88 (3)1.77 (3)2.642 (3)176 (3)
O3—H3⋯O20.92 (3)1.78 (3)2.617 (3)152 (3)

Symmetry code: (i) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-Hy-droxy-5-{[(E)-4-meth-oxy-benzyl-idene]aza-nium-yl}benzoate.

Authors:  M Nawaz Tahir; Muhammad Ilyas Tariq; Shahbaz Ahmad; Muhammad Sarfraz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-11

3.  5-[(E)-(2,6-Dichloro-benzyl-idene)amino]-2-hy-droxy-benzoic acid.

Authors:  M Nawaz Tahir; Hazoor Ahmad Shad; Muhammad Naeem Khan; Muhammad Ilyas Tariq
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-23

4.  2-Hy-droxy-5-[(E)-(1H-indol-3-yl-methyl-idene)aza-nium-yl]benzoate.

Authors:  M Nawaz Tahir; Hazoor Ahmad Shad
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-27

5.  2-{[(E)-1,3-Benzodioxol-5-yl]methyl-idene-amino}-benzoic acid.

Authors:  M Nawaz Tahir; Hazoor Ahmad Shad; Muhammad Naeem Khan; Muhammad Ilyas Tariq
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-30

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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