| Literature DB >> 22058915 |
Augusto Rivera, Diego Quiroga, Jaime Ríos-Motta, Karla Fejfarová, Michal Dušek.
Abstract
In the crystal structure of the title compound, C(21)H(24)I(2)N(2)O(2), the two N atoms of the imidazolidine moiety are linked to the hy-droxy groups by intra-molecular O-H⋯N hydrogen-bonding inter-actions. The cyclo-hexane ring adopts a chair conformation and the heterocyclic ring to which it is fused has a twisted envelope conformation.Entities:
Year: 2011 PMID: 22058915 PMCID: PMC3200707 DOI: 10.1107/S1600536811030054
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C21H24I2N2O2 | |
| Monoclinic, | Cu |
| Hall symbol: C 2y | Cell parameters from 5885 reflections |
| θ = 3.1–67.1° | |
| µ = 23.34 mm−1 | |
| β = 121.119 (6)° | Prism, colourless |
| 0.26 × 0.12 × 0.05 mm | |
| Agilent Xcalibur diffractometer with an Atlas (Gemini ultra Cu) detector | 3650 independent reflections |
| Radiation source: Enhance Ultra (Cu) X-ray Source | 3397 reflections with |
| mirror | |
| Detector resolution: 10.3784 pixels mm-1 | θmax = 67.2°, θmin = 3.1° |
| Rotation method data acquisition using ω scans | |
| Absorption correction: analytical ( | |
| 11449 measured reflections |
| Refinement on | H atoms treated by a mixture of independent and constrained refinement |
| Weighting scheme based on measured s.u.'s | |
| (Δ/σ)max = 0.038 | |
| Δρmax = 0.85 e Å−3 | |
| 3650 reflections | Δρmin = −0.87 e Å−3 |
| 250 parameters | Absolute structure: Flack (1983), 1566 Friedel pairs |
| 2 restraints | Flack parameter: 0.079 (13) |
| 91 constraints |
| Experimental. CrysAlis Pro (Agilent, 2010), Analytical numeric absorption correction using a multifaceted crystal model. |
| Refinement. The refinement was carried out against all reflections. The conventional
|
| I1 | 0.40926 (2) | 0.38885 | 0.03435 (3) | 0.0457 (2) | |
| I2 | 0.54564 (3) | 0.34180 (15) | 0.67075 (4) | 0.0621 (3) | |
| O1 | 0.2558 (2) | 0.8312 (10) | 0.1940 (3) | 0.040 (2) | |
| O2 | 0.2940 (3) | −0.1604 (11) | 0.4035 (4) | 0.054 (3) | |
| N1 | 0.2165 (3) | 0.4306 (11) | 0.2051 (4) | 0.034 (2) | |
| N2 | 0.2436 (3) | 0.2401 (11) | 0.3459 (4) | 0.035 (3) | |
| C1 | 0.2707 (3) | 0.3359 (13) | 0.2912 (4) | 0.034 (3) | |
| C2 | 0.1598 (3) | 0.3332 (14) | 0.1992 (4) | 0.036 (3) | |
| C3 | 0.1790 (3) | 0.3314 (15) | 0.3014 (5) | 0.038 (3) | |
| C4 | 0.1317 (4) | 0.2045 (16) | 0.3154 (6) | 0.045 (4) | |
| C5 | 0.0666 (4) | 0.314 (2) | 0.2559 (6) | 0.061 (5) | |
| C6 | 0.0474 (3) | 0.335 (2) | 0.1518 (5) | 0.051 (4) | |
| C7 | 0.0975 (4) | 0.4517 (15) | 0.1400 (5) | 0.042 (3) | |
| C8 | 0.2198 (3) | 0.3905 (16) | 0.1187 (4) | 0.031 (3) | |
| C9 | 0.2733 (3) | 0.5131 (13) | 0.1224 (5) | 0.034 (3) | |
| C10 | 0.2890 (4) | 0.7266 (14) | 0.1603 (5) | 0.035 (3) | |
| C11 | 0.3386 (3) | 0.8414 (15) | 0.1623 (4) | 0.037 (3) | |
| C12 | 0.3732 (4) | 0.7461 (14) | 0.1254 (5) | 0.042 (3) | |
| C13 | 0.3568 (4) | 0.5396 (14) | 0.0869 (5) | 0.037 (3) | |
| C14 | 0.3084 (3) | 0.4225 (12) | 0.0860 (4) | 0.031 (3) | |
| C15 | 0.2835 (4) | 0.2855 (14) | 0.4477 (5) | 0.038 (3) | |
| C16 | 0.3459 (4) | 0.1688 (14) | 0.4877 (5) | 0.038 (3) | |
| C17 | 0.3489 (4) | −0.0472 (14) | 0.4615 (5) | 0.042 (4) | |
| C18 | 0.4071 (4) | −0.1506 (18) | 0.4971 (6) | 0.052 (4) | |
| C19 | 0.4628 (5) | −0.0464 (14) | 0.5584 (6) | 0.046 (4) | |
| C20 | 0.4608 (4) | 0.1693 (16) | 0.5825 (6) | 0.047 (4) | |
| C21 | 0.4035 (4) | 0.2758 (15) | 0.5479 (5) | 0.041 (3) | |
| H1a | 0.30018 | 0.449807 | 0.327486 | 0.041* | |
| H1b | 0.289698 | 0.222021 | 0.273989 | 0.041* | |
| H2 | 0.150156 | 0.194368 | 0.167635 | 0.0427* | |
| H3 | 0.179095 | 0.470059 | 0.328724 | 0.046* | |
| H4a | 0.144224 | 0.208887 | 0.380735 | 0.0534* | |
| H4b | 0.129369 | 0.056584 | 0.294365 | 0.0534* | |
| H5a | 0.067702 | 0.456816 | 0.281037 | 0.0736* | |
| H5b | 0.035132 | 0.23068 | 0.260104 | 0.0736* | |
| H6a | 0.039828 | 0.192423 | 0.123906 | 0.0611* | |
| H6b | 0.007888 | 0.412918 | 0.117567 | 0.0611* | |
| H7a | 0.085623 | 0.447024 | 0.074901 | 0.0506* | |
| H7b | 0.101731 | 0.600035 | 0.161522 | 0.0506* | |
| H8a | 0.22518 | 0.236821 | 0.113022 | 0.0373* | |
| H8b | 0.180562 | 0.434385 | 0.06391 | 0.0373* | |
| H11 | 0.349133 | 0.985749 | 0.188885 | 0.0443* | |
| H12 | 0.40771 | 0.823632 | 0.127037 | 0.05* | |
| H14 | 0.298725 | 0.277391 | 0.060112 | 0.0371* | |
| H15a | 0.290776 | 0.440117 | 0.457354 | 0.0451* | |
| H15b | 0.26204 | 0.236075 | 0.479059 | 0.0451* | |
| H18 | 0.408329 | −0.298327 | 0.478383 | 0.0625* | |
| H19 | 0.502706 | −0.121714 | 0.584329 | 0.0552* | |
| H21 | 0.402993 | 0.425237 | 0.565416 | 0.0489* | |
| H1O | 0.240 (4) | 0.728 (11) | 0.209 (7) | 0.0482* | |
| H2O | 0.270 (4) | −0.059 (13) | 0.370 (7) | 0.0643* |
| I1 | 0.0504 (2) | 0.0491 (3) | 0.0454 (2) | −0.0022 (2) | 0.0304 (2) | −0.0027 (2) |
| I2 | 0.0572 (3) | 0.0623 (5) | 0.0429 (3) | 0.0124 (3) | 0.0089 (2) | −0.0038 (3) |
| O1 | 0.054 (3) | 0.030 (3) | 0.042 (2) | −0.003 (2) | 0.028 (2) | −0.001 (2) |
| O2 | 0.090 (4) | 0.025 (4) | 0.047 (3) | −0.007 (3) | 0.036 (3) | −0.004 (3) |
| N1 | 0.045 (3) | 0.031 (4) | 0.029 (3) | −0.005 (2) | 0.021 (2) | −0.004 (2) |
| N2 | 0.048 (3) | 0.032 (4) | 0.026 (3) | −0.007 (3) | 0.020 (3) | −0.003 (2) |
| C1 | 0.045 (3) | 0.030 (4) | 0.031 (3) | −0.005 (3) | 0.022 (3) | 0.000 (3) |
| C2 | 0.045 (3) | 0.035 (5) | 0.033 (3) | −0.008 (3) | 0.025 (3) | −0.003 (3) |
| C3 | 0.050 (4) | 0.033 (5) | 0.034 (3) | −0.005 (3) | 0.024 (3) | −0.001 (3) |
| C4 | 0.058 (4) | 0.046 (5) | 0.039 (4) | −0.011 (4) | 0.031 (4) | 0.000 (4) |
| C5 | 0.057 (5) | 0.088 (9) | 0.047 (4) | −0.008 (5) | 0.033 (4) | −0.001 (5) |
| C6 | 0.042 (4) | 0.070 (7) | 0.044 (4) | −0.009 (4) | 0.025 (3) | −0.006 (5) |
| C7 | 0.051 (4) | 0.043 (5) | 0.034 (4) | −0.004 (3) | 0.022 (3) | 0.000 (3) |
| C8 | 0.039 (3) | 0.023 (4) | 0.026 (3) | −0.001 (3) | 0.013 (2) | 0.006 (3) |
| C9 | 0.043 (4) | 0.034 (5) | 0.022 (3) | 0.000 (3) | 0.015 (3) | 0.007 (3) |
| C10 | 0.041 (4) | 0.034 (5) | 0.028 (3) | −0.004 (3) | 0.016 (3) | −0.003 (3) |
| C11 | 0.047 (3) | 0.029 (5) | 0.029 (3) | −0.005 (3) | 0.016 (3) | −0.003 (3) |
| C12 | 0.046 (4) | 0.040 (5) | 0.034 (4) | −0.006 (3) | 0.017 (3) | 0.004 (3) |
| C13 | 0.043 (4) | 0.040 (5) | 0.033 (4) | −0.001 (3) | 0.022 (3) | −0.001 (3) |
| C14 | 0.046 (3) | 0.020 (4) | 0.023 (3) | −0.004 (3) | 0.015 (3) | 0.000 (3) |
| C15 | 0.059 (4) | 0.031 (5) | 0.029 (3) | 0.005 (3) | 0.028 (3) | 0.001 (3) |
| C16 | 0.062 (5) | 0.025 (4) | 0.028 (4) | 0.003 (3) | 0.024 (4) | 0.002 (3) |
| C17 | 0.075 (5) | 0.025 (5) | 0.033 (4) | −0.004 (4) | 0.034 (4) | −0.003 (3) |
| C18 | 0.092 (6) | 0.028 (6) | 0.048 (4) | 0.008 (5) | 0.044 (4) | −0.003 (4) |
| C19 | 0.078 (6) | 0.031 (5) | 0.041 (4) | 0.014 (4) | 0.039 (4) | 0.009 (3) |
| C20 | 0.060 (5) | 0.043 (5) | 0.034 (4) | 0.013 (4) | 0.023 (4) | 0.009 (4) |
| C21 | 0.063 (5) | 0.032 (5) | 0.027 (3) | 0.006 (3) | 0.023 (3) | 0.003 (3) |
| I1—C13 | 2.105 (10) | C6—H6b | 0.96 |
| I2—C20 | 2.108 (8) | C7—H7a | 0.96 |
| O1—C10 | 1.363 (12) | C7—H7b | 0.96 |
| O1—H1O | 0.84 (10) | C8—C9 | 1.488 (12) |
| O2—C17 | 1.372 (10) | C8—H8a | 0.96 |
| O2—H2O | 0.84 (8) | C8—H8b | 0.96 |
| N1—C1 | 1.476 (7) | C9—C10 | 1.412 (11) |
| N1—C2 | 1.471 (11) | C9—C14 | 1.396 (13) |
| N1—C8 | 1.494 (11) | C10—C11 | 1.392 (13) |
| N2—C1 | 1.494 (12) | C11—C12 | 1.405 (14) |
| N2—C3 | 1.473 (10) | C11—H11 | 0.96 |
| N2—C15 | 1.472 (9) | C12—C13 | 1.377 (12) |
| C1—H1a | 0.96 | C12—H12 | 0.96 |
| C1—H1b | 0.96 | C13—C14 | 1.383 (12) |
| C2—C3 | 1.503 (11) | C14—H14 | 0.96 |
| C2—C7 | 1.510 (10) | C15—C16 | 1.501 (12) |
| C2—H2 | 0.96 | C15—H15a | 0.96 |
| C3—C4 | 1.511 (14) | C15—H15b | 0.96 |
| C3—H3 | 0.96 | C16—C17 | 1.404 (12) |
| C4—C5 | 1.532 (12) | C16—C21 | 1.402 (11) |
| C4—H4a | 0.96 | C17—C18 | 1.385 (14) |
| C4—H4b | 0.96 | C18—C19 | 1.370 (12) |
| C5—C6 | 1.539 (13) | C18—H18 | 0.96 |
| C5—H5a | 0.96 | C19—C20 | 1.385 (13) |
| C5—H5b | 0.96 | C19—H19 | 0.96 |
| C6—C7 | 1.520 (15) | C20—C21 | 1.380 (13) |
| C6—H6a | 0.96 | C21—H21 | 0.96 |
| C10—O1—H1O | 104 (7) | H7a—C7—H7b | 110.9091 |
| C17—O2—H2O | 101 (6) | N1—C8—C9 | 111.3 (6) |
| C1—N1—C2 | 104.8 (6) | N1—C8—H8a | 109.4702 |
| C1—N1—C8 | 113.0 (6) | N1—C8—H8b | 109.4715 |
| C2—N1—C8 | 112.9 (5) | C9—C8—H8a | 109.4718 |
| C1—N2—C3 | 104.6 (6) | C9—C8—H8b | 109.4709 |
| C1—N2—C15 | 112.3 (6) | H8a—C8—H8b | 107.5975 |
| C3—N2—C15 | 114.1 (7) | C8—C9—C10 | 121.1 (9) |
| N1—C1—N2 | 106.1 (6) | C8—C9—C14 | 120.8 (7) |
| N1—C1—H1a | 109.4714 | C10—C9—C14 | 118.1 (8) |
| N1—C1—H1b | 109.4713 | O1—C10—C9 | 122.1 (8) |
| N2—C1—H1a | 109.472 | O1—C10—C11 | 117.2 (7) |
| N2—C1—H1b | 109.471 | C9—C10—C11 | 120.7 (9) |
| H1a—C1—H1b | 112.6582 | C10—C11—C12 | 120.0 (8) |
| N1—C2—C3 | 101.2 (5) | C10—C11—H11 | 119.9796 |
| N1—C2—C7 | 117.1 (7) | C12—C11—H11 | 119.9777 |
| N1—C2—H2 | 110.6437 | C11—C12—C13 | 118.9 (9) |
| C3—C2—C7 | 110.9 (8) | C11—C12—H12 | 120.5572 |
| C3—C2—H2 | 116.8819 | C13—C12—H12 | 120.5582 |
| C7—C2—H2 | 100.8307 | I1—C13—C12 | 119.8 (7) |
| N2—C3—C2 | 101.3 (7) | I1—C13—C14 | 118.5 (6) |
| N2—C3—C4 | 116.5 (7) | C12—C13—C14 | 121.6 (9) |
| N2—C3—H3 | 111.0115 | C9—C14—C13 | 120.7 (7) |
| C2—C3—C4 | 111.0 (6) | C9—C14—H14 | 119.6736 |
| C2—C3—H3 | 116.5093 | C13—C14—H14 | 119.6733 |
| C4—C3—H3 | 101.3338 | N2—C15—C16 | 109.9 (8) |
| C3—C4—C5 | 107.9 (8) | N2—C15—H15a | 109.4717 |
| C3—C4—H4a | 109.4721 | N2—C15—H15b | 109.4717 |
| C3—C4—H4b | 109.4725 | C16—C15—H15a | 109.4703 |
| C5—C4—H4a | 109.4701 | C16—C15—H15b | 109.471 |
| C5—C4—H4b | 109.47 | H15a—C15—H15b | 109.0826 |
| H4a—C4—H4b | 111.0366 | C15—C16—C17 | 121.1 (7) |
| C4—C5—C6 | 111.8 (9) | C15—C16—C21 | 121.2 (8) |
| C4—C5—H5a | 109.4716 | C17—C16—C21 | 117.6 (8) |
| C4—C5—H5b | 109.4713 | O2—C17—C16 | 120.0 (8) |
| C6—C5—H5a | 109.4709 | O2—C17—C18 | 119.6 (8) |
| C6—C5—H5b | 109.4715 | C16—C17—C18 | 120.4 (8) |
| H5a—C5—H5b | 107.0854 | C17—C18—C19 | 121.3 (10) |
| C5—C6—C7 | 112.5 (6) | C17—C18—H18 | 119.3262 |
| C5—C6—H6a | 109.4704 | C19—C18—H18 | 119.324 |
| C5—C6—H6b | 109.4702 | C18—C19—C20 | 119.0 (9) |
| C7—C6—H6a | 109.4723 | C18—C19—H19 | 120.5016 |
| C7—C6—H6b | 109.4718 | C20—C19—H19 | 120.5014 |
| H6a—C6—H6b | 106.2371 | I2—C20—C19 | 120.4 (7) |
| C2—C7—C6 | 108.0 (7) | I2—C20—C21 | 118.9 (7) |
| C2—C7—H7a | 109.4703 | C19—C20—C21 | 120.7 (8) |
| C2—C7—H7b | 109.4705 | C16—C21—C20 | 120.9 (8) |
| C6—C7—H7a | 109.4719 | C16—C21—H21 | 119.5344 |
| C6—C7—H7b | 109.4721 | C20—C21—H21 | 119.5335 |
| ?—?—?—? | ? |
| H··· | ||||
| O1—H1O···N1 | 0.84 (10) | 1.90 (7) | 2.672 (9) | 152 (11) |
| O2—H2O···N2 | 0.84 (8) | 1.91 (8) | 2.686 (9) | 154 (8) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1O⋯N1 | 0.84 (10) | 1.90 (7) | 2.672 (9) | 152 (11) |
| O2—H2O⋯N2 | 0.84 (8) | 1.91 (8) | 2.686 (9) | 154 (8) |